LOC120556279 (atp6v0d1,LOC103462946,LOC107563463)


Basic Information

Item Value
gene id LOC120556279
gene name atp6v0d1,LOC103462946,LOC107563463
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 40672915 ~ 40682357 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795758.1
ACATGGTTCAGTCAGCTGATGCTAACGCTAACAACCGGACTCTGACGGTTCTCCACCAGCGGCAGAGAGAGACGGATCTGACGGTCAGACAGGATGCCTTTCTCCGAGCTATATTTTAACGTGGACAACGGCTACCTGGAGGGGTTAGTCAGAGGATTTAAAGCTGGTATACTGTCCCAGGCGGATTATTTAAACCTTGTTCAGTGTGAGACTCTGGAAGATCTGAAGCTCCACCTGCAGAGTACAGACTATGGCAGCTTCTTGGCAAACGAGGCGTCCCCTCTCACCGTGTCCGTTATCGATGACAAGCTGAAGGAGAAGATGGTGGTGGAGTTTCGCCACATGAGGAACCAGTCGTACGAGCCGCTGGCCAGCTTCATGGACTTCATCACGTACAGCTATATGATTGATAACGTCATCCTGCTGATCACGGGCACCCTCCACCAGCGGGCCATCTCTGAGCTGGTGCCAAAGTGTCACCCGCTGGGCAGCTTCGAGCAGATGGAGGCGGTCAACATCGCTCAGACCCCCGCCGAGCTCTACAACGCCATCCTGGTGGACACGCCCCTGGCTGCTTTCTTCCAGGACTGCATATCTGAACAGGATTTGGATGAGATGAATATTGAAATAATTCGTAACACACTTTACAAGGCTTACCTGGAGGCCTTCTATAAGTTCTGCTCCAACCTTGGAGGAACCACGGCTGACACCATGTGTCCTATTCTGGAGTTCGAGGCAGACAGGAGAGccttcatcatcaccatcaacTCGTTCGGCACGGAGCTGTCCAAGGAGGACCGCGCCAAGCTCTTCCCCCACTGCGGCAAGCTTTACCCAGAAGGCCTTGCTCAGCTGGCCCGGGCAGATGACTATGAGCAGGTCAAGGCCATCGCTGATTTCTATCCTGAGTACAAGCTGCTGTTTGAGGGTGCTGGCAGCAACCCAGGCGACAAAACACTGGAGGACCGTTTCTTCGAGCACGAGGTGAAGCTGAACAAGCTGGCCTTCCTCAACCAGTTCCACTTCAGTGTCTTCTACGCCTACGTCAAGCTGAAGGAGCAGGAGTGCAGGAACATCGTGTGGATCGCCGAGTGCATCGCACAGCGGCACCGCGCCAAGATCGACAACTACATTCCTATCTTTtgagcctcctcttcctcccctccccccttctTTCCACCCTATCCTTATGTCATTCAGTCTCATGTCTTGAGCAGTGTCTCCAGTCCCACCTCGGTGTTAAAGATTCTGATGGTTTGATGCTAAATTTTCTCCATTCTTCACTCGCAGGTGTTGTAATAGAAGGTCCAGCCCGGCTCATTATTGCTTACAGAgtaaaacacacatttcaacTTAAATGCAGAGTTCTTAAGCTGGAAAAGAACGACATGAGCCTGGTGGCTGGTGCTTGTTTTAATCAGCTCAGCAGAAAAGGAGGCAACTCATTTGACTTTCAAACACTCGGCTCTGATTGTCCAAACTTTCACTGCTCAgcgtgttgtttttttgcagcaCGCAAAGCTGACGTGTCCACCTGACACATCGACTGACAAAACGCACCAGAAGAATAATTTGCAATTTACTCAGTCCAGGAATTAACCCGCCAGCTAACCAGAACTGAAAAGCCTCggggttttttttccctccaactCCCAGGCCATCAAACACCAACCATCTTGTTGAGGTCGCGGTAATCCTCGGGCGCATTAAATGCTTAAAGGTGCAGCGTATGGTACGTTTTGGATTTATCgccaaaaacagtgaaaaaaagaaaagttaacgTCGCAAATCTGATATTAACACGGCCGCAGAACTCCAGCCAGTCGTGGCAACATTCCTCTGCTCAGCGTCAGGTCCACCAGCTTCTATATAAcctgtatttatttctgttttagtgCTAGGTTTTGTCAGCATGTCTGGTCATTATTGtgtttcccccccccaaaaaactaaCGAGTGAAGTGTGTGAGCCCCCACCTGATTTGCTGTCTTAACTAGATCGTTGTTAGGTATTTAAAACACAGCAGCTGAACAGGAGCTTCCAGTCCTTGCCGTCCCCGTTCCTGTGTGAACTCTTTGAGTTTCTGTAAATGAACGTACTGGAATGAGGTGAAATCTTGTGAGTATATGACAGACTTAGTGTTCAAACTATacgaatatatatatagatatttaaAGATAACTATatgatttttgttattttttccatgctgtaaaaaaaaaatgatttttttctgttttgatcTGTTTCTTACTTGTGAAATGTGTACtgtaaatgtgacaaaaaataaatagactACACTGCACTAACACAGATCTGGGGACATTTTAAAGACCTATCAAATGGCTTTGAAATAATATCACTAGTTTGATGTGTTAGTGACAGATGTAGGAAATTAA

Function

symbol description
atp6v0d1 Predicted to enable proton transmembrane transporter activity. Involved in left/right axis specification. Acts upstream of or within several processes, including animal organ development; pigment granule organization; and response to copper ion. Predicted to be located in lysosome and membrane. Predicted to be part of plasma membrane proton-transporting V-type ATPase complex and vacuolar proton-transporting V-type ATPase complex. Predicted to be active in early endosome. Predicted to colocalize with centrosome. Is expressed in several structures, including digestive system; integument; nervous system; pleuroperitoneal region; and presumptive retinal pigmented epithelium. Orthologous to human ATP6V0D1 (ATPase H+ transporting V0 subunit d1).

NR:

description
PREDICTED: V-type proton ATPase subunit d 1 isoform X1

GO:

id name namespace
GO:0003406 retinal pigment epithelium development biological_process
GO:0032438 melanosome organization biological_process
GO:0046688 response to copper ion biological_process
GO:0008057 eye pigment granule organization biological_process
GO:0070986 left/right axis specification biological_process
GO:0005813 centrosome cellular_component
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02146 ATPeV0D, ATP6D; V-type H+-transporting ATPase subunit d

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795758.1 True 2400 mRNA 0.47 8 40672915 40682357

Neighbor

gene id symbol gene type direction distance location
foxr1 NA coding downstream 1313 40666272 ~ 40671602 (-)
LOC120556133 NA coding downstream 20164 40648347 ~ 40652751 (-)
LOC120556376 NA coding downstream 41790 40598769 ~ 40631125 (-)
LOC120556512 glg1,LOC100701703,LOC101472041,LOC108242135 coding downstream 256852 40386097 ~ 40416063 (-)
samd4a samd4a,LOC102311861 coding downstream 359110 40244929 ~ 40313805 (-)
ndufs3 ndufs3 coding upstream 247113 40929470 ~ 40934556 (-)
ptpmt1 ptpmt1,LOC102795413 coding upstream 255458 40937815 ~ 40948565 (-)
prc1b prc1,LOC102796011 coding upstream 270558 40952915 ~ 40973681 (-)
vps33b vps33b coding upstream 292433 40974790 ~ 40998777 (-)
hypk hypk coding upstream 333112 41015469 ~ 41018907 (-)
G33109 NA non-coding downstream 108984 40562192 ~ 40563931 (-)
G33061 NA non-coding downstream 278212 40281473 ~ 40394703 (-)
G33068 NA non-coding downstream 337968 40331750 ~ 40334947 (-)
G33048 NA non-coding downstream 464140 40207391 ~ 40208775 (-)
G32952 NA non-coding downstream 623549 40048059 ~ 40049366 (-)
G33167 c1qtnf4,LOC102794664 non-coding upstream 235870 40918227 ~ 40918584 (-)
G33168 NA non-coding upstream 237977 40920334 ~ 40925054 (-)
G33196 NA non-coding upstream 254484 40936841 ~ 40937064 (-)
G33347 NA non-coding upstream 763172 41445529 ~ 41445742 (-)
G33368 NA non-coding upstream 878475 41560832 ~ 41565475 (-)
LOC120556513 NA other downstream 9258 40661364 ~ 40663657 (-)
G33122 NA other downstream 10294 40648676 ~ 40662621 (-)
LOC120556146 NA other downstream 83251 40564241 ~ 40589664 (-)
LOC120556511 LOC102208128,LOC101468289 other downstream 530867 40049624 ~ 40142048 (-)
slc6a5 slc6a5 other downstream 1437169 39205275 ~ 39235746 (-)
sirt3 sirt3 other upstream 1075270 41757627 ~ 41764896 (-)
G33711 NA other upstream 1716934 42399291 ~ 42402136 (-)
G33796 NA other upstream 2302866 42985223 ~ 42990770 (-)
G33847 NA other upstream 2532277 43214634 ~ 43214987 (-)
G33914 NA other upstream 2770355 43452712 ~ 43456847 (-)

Expression


Co-expression Network