chrna5


Basic Information

Item Value
gene id chrna5
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 34942334 ~ 34955077 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795768.1
CCTGTGCCCGTGCCCAATTGGAGGCAGCAGGGAGTGAAGCAGCATCTGTATGAGGCGAGAGAAAGAACCTGCATGGAATGGAGGAGCTCTAGAGCAGCACTGTCGCTGTCGTAAAGACTCCCACCGCCTCCACCACCGCTACCACTCTGGATTGTGTGTTAATGGAAGACACTCAGAGCAGctctgTAATGCCTGAGGGACCAGCTGTGTGGATCCAGTGCCACCTTTGATATGATGCTGAGAGCAGGAGGGGCAGCCACCTCTCTcggactgctgctgctgttgctgccgcTGCTGTGCTGCTGCCACATGTGCCACTCACTGCGGATTCCAAAACTCTCCTCCTTTGCAAAAGCAGAGGACAAGCTGTTCAAATCCCTCTTTGTAAACTACCAGAAATGGGTCCGTCCAGTGGAATACCTTAACCAGACGATCTGTGTGAAGTTTGGACTGGCCATCTCCCAGTTAGTTGATGTGGATGAGAAAAACCAGCGAATGACAACCAATGTGTGGATGAAACAGGAGTGGCTTGACAGGAAACTCAGATGGAACCCTGATGAATATCTGGGCATCACAACTATCCGAGTCCCATCTAACAGGATCTGGCTCCCTGACGTGGTACTGTATGATAAtTCAGATGGGCGTTTTGAGGGTACTGTCACCAAGGCAGTTGTTAAGTATGATGGAACCATATCATGGACACCACCAGCCAATTACAAGTCAGCTTGCACCATTGATGTCACCTTCTTCCCTTTTGATCTCCAGAACTGCTCAATGAAGTTTGGCTCCTGGACATATGATGGCTCTCAGGTGGACATAATTCTGGAGGACTTCCATGTGGACAAGCAGGACTATTTTGACAACGGTGAATGGGAGATAGTGAAGGCCACAGGCAGCCGTGGTCTAAGAACAGACGGGAGCTCTTCCTATCCCACCATCACCTACTTCTTCATCATTCGCCGGTTGCCTCTTTTCTACACCCTCTTCCTCATCATCCCCTGCATTGGCCTGTCCTTCCTCACCATCCTTGTCTTCTATCTGCCCTCCAACGGCGGCGAGAAGATCTCCCTCTGCACCTCAGTTCTGGTGTCGCTCACAGTTTTCCTCCTGGTCATTGAGGAGATCATTCCTTCGTCTTCGAAGGCCATCCCTCTCATCGGGGAGTACCTGGTCTTCACTATGATCTTCGTCACGCTCTCCATCATCATCACCGTCTTCGCCATCAACATCCACCATCGCTCCTCTTCTACCCATCACGGCATGGCACCCTGGGTGAGGAGGATCTTCCTGCATCGACTGCCTAAGCTGCTGTGCATGCGCAGCCACGTGGACCGCTACGACCCAGCTGGAGTAGCCAGAGCAGGAGGAGCAGTAGGACATGGTGTGACGGAGGACTCAGCACCTGAACTGACACCTCTGCTCTACACCAGGCATAACCTACAAGCAGCATTGGATTCTATTCGCTACATAAACATGCATGTGGTTAAAGAAAATGAGGTCAGAGAGGTGGTTCAAGATTGGAAATTTGTAGCCCAGGTCTTAGATCGAGTGTTTCTTTGGGCCTTCCTTCTGGTGTCGACCCTGGGCACTGCGCTCCTCTTCATCccagtcatttacaaatgggcCAACATCATTGTCCCTAACCATGCTGGAAGTACCCTCTAAGAGCCACAGTTCAACTTACAACAAATGGAGGCAAAGCACATTAACAGCTCATTATGGGTCCCATTGTGAGATTTGAAAGACTGAGATAGTGTGATTACCACTCAGATACGGTCCTGCTCTGCTTATCCAGTCATTCTGTAAGCCACAGCTGTGccagagatccagctgcagatTTGGGGACTTGATTGCTGAGTGTATCTCACAGAcacgtgttttttttgtttgttttagagATATTTTGAATTCTGTATTTCTGAGTAAAGTAAAGATAAATGAAAAGACTCAATTGATGTATTACGAAGAAGAAAAATCTACCATTGTCCACATCTCACACATCAATAAATTTCAATACATTTCACCTACTAAACTTGCTGGCATCATAGCGTTGAGATGTATCTTTAGGTCTTATAGAGATTCGTAGATACAAAATAGCAAGACAACGTGTCTTAACAGGATCATTTCGAAAAAATGTCCCAGTGATGCCTCCTTTGTTTTTGCAGGTTGCAGGACACAGTGATGAATATCGATTCAGTTTAATTCATTTCAATATAACGTTATTTATCTCTTTAATTATATGGCAGCTTGCCACCCAGATTGGCAGATACACACACTAGTTAGACACACACAATAGTTAGCAGAAGACATTTTACATACTACTCTGTGTGCATATccgctatatactgtataacattTGGAAAAATGACCACTTTATCTGTGGGGCATAGTTCAAATAAAAGTGATGGTTTAACTTTGCTTTTCTGTAATTCCAGTTTCACAAATGTGATCAAGAGCAAGAACAAGGAAGTGAGAATAGAACAACATATTCCTTCCTTAAAATAAAAGACGTGCATTTTAAAGTTA
>XM_039795769.1
AGTAAACTGCTTTGCCCACCGTCAGCTGCCTACCAAAGCGAGTCCAGACCAATGCCAGGAAGGAAGGGGCGGTTACGAGGAAGAGATGAGTGAAACGCGATAAGGAAGctctgTAATGCCTGAGGGACCAGCTGTGTGGATCCAGTGCCACCTTTGATATGATGCTGAGAGCAGGAGGGGCAGCCACCTCTCTcggactgctgctgctgttgctgccgcTGCTGTGCTGCTGCCACATGTGCCACTCACTGCGGATTCCAAAACTCTCCTCCTTTGCAAAAGCAGAGGACAAGCTGTTCAAATCCCTCTTTGTAAACTACCAGAAATGGGTCCGTCCAGTGGAATACCTTAACCAGACGATCTGTGTGAAGTTTGGACTGGCCATCTCCCAGTTAGTTGATGTGGATGAGAAAAACCAGCGAATGACAACCAATGTGTGGATGAAACAGGAGTGGCTTGACAGGAAACTCAGATGGAACCCTGATGAATATCTGGGCATCACAACTATCCGAGTCCCATCTAACAGGATCTGGCTCCCTGACGTGGTACTGTATGATAAtTCAGATGGGCGTTTTGAGGGTACTGTCACCAAGGCAGTTGTTAAGTATGATGGAACCATATCATGGACACCACCAGCCAATTACAAGTCAGCTTGCACCATTGATGTCACCTTCTTCCCTTTTGATCTCCAGAACTGCTCAATGAAGTTTGGCTCCTGGACATATGATGGCTCTCAGGTGGACATAATTCTGGAGGACTTCCATGTGGACAAGCAGGACTATTTTGACAACGGTGAATGGGAGATAGTGAAGGCCACAGGCAGCCGTGGTCTAAGAACAGACGGGAGCTCTTCCTATCCCACCATCACCTACTTCTTCATCATTCGCCGGTTGCCTCTTTTCTACACCCTCTTCCTCATCATCCCCTGCATTGGCCTGTCCTTCCTCACCATCCTTGTCTTCTATCTGCCCTCCAACGGCGGCGAGAAGATCTCCCTCTGCACCTCAGTTCTGGTGTCGCTCACAGTTTTCCTCCTGGTCATTGAGGAGATCATTCCTTCGTCTTCGAAGGCCATCCCTCTCATCGGGGAGTACCTGGTCTTCACTATGATCTTCGTCACGCTCTCCATCATCATCACCGTCTTCGCCATCAACATCCACCATCGCTCCTCTTCTACCCATCACGGCATGGCACCCTGGGTGAGGAGGATCTTCCTGCATCGACTGCCTAAGCTGCTGTGCATGCGCAGCCACGTGGACCGCTACGACCCAGCTGGAGTAGCCAGAGCAGGAGGAGCAGTAGGACATGGTGTGACGGAGGACTCAGCACCTGAACTGACACCTCTGCTCTACACCAGGCATAACCTACAAGCAGCATTGGATTCTATTCGCTACATAAACATGCATGTGGTTAAAGAAAATGAGGTCAGAGAGGTGGTTCAAGATTGGAAATTTGTAGCCCAGGTCTTAGATCGAGTGTTTCTTTGGGCCTTCCTTCTGGTGTCGACCCTGGGCACTGCGCTCCTCTTCATCccagtcatttacaaatgggcCAACATCATTGTCCCTAACCATGCTGGAAGTACCCTCTAAGAGCCACAGTTCAACTTACAACAAATGGAGGCAAAGCACATTAACAGCTCATTATGGGTCCCATTGTGAGATTTGAAAGACTGAGATAGTGTGATTACCACTCAGATACGGTCCTGCTCTGCTTATCCAGTCATTCTGTAAGCCACAGCTGTGccagagatccagctgcagatTTGGGGACTTGATTGCTGAGTGTATCTCACAGAcacgtgttttttttgtttgttttagagATATTTTGAATTCTGTATTTCTGAGTAAAGTAAAGATAAATGAAAAGACTCAATTGATGTATTACGAAGAAGAAAAATCTACCATTGTCCACATCTCACACATCAATAAATTTCAATACATTTCACCTACTAAACTTGCTGGCATCATAGCGTTGAGATGTATCTTTAGGTCTTATAGAGATTCGTAGATACAAAATAGCAAGACAACGTGTCTTAACAGGATCATTTCGAAAAAATGTCCCAGTGATGCCTCCTTTGTTTTTGCAGGTTGCAGGACACAGTGATGAATATCGATTCAGTTTAATTCATTTCAATATAACGTTATTTATCTCTTTAATTATATGGCAGCTTGCCACCCAGATTGGCAGATACACACACTAGTTAGACACACACAATAGTTAGCAGAAGACATTTTACATACTACTCTGTGTGCATATccgctatatactgtataacattTGGAAAAATGACCACTTTATCTGTGGGGCATAGTTCAAATAAAAGTGATGGTTTAACTTTGCTTTTCTGTAATTCCAGTTTCACAAATGTGATCAAGAGCAAGAACAAGGAAGTGAGAATAGAACAACATATTCCTTCCTTAAAATAAAAGACGTGCATTTTAAAGTTA

Function

NR:

description
neuronal acetylcholine receptor subunit alpha-5-like isoform X1

GO: NA

KEGG:

id description
K04807 CHRNA5; nicotinic acetylcholine receptor alpha-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795768.1 True 2526 mRNA 0.46 8 34942334 34953344
XM_039795769.1 False 2453 mRNA 0.46 8 34942334 34955077

Neighbor

gene id symbol gene type direction distance location
LOC120556551 LOC103358809,LOC104958159 coding downstream 1429 34937904 ~ 34940905 (-)
LOC120555974 LOC105015542,LOC106562136,LOC107661444,LOC101477331 coding downstream 62185 34867832 ~ 34880149 (-)
zgc:158464 shf coding downstream 126323 34712703 ~ 34816011 (-)
cd276 cd276 coding downstream 244669 34617056 ~ 34697665 (-)
loxl1 loxl1 coding downstream 636018 34288091 ~ 34306316 (-)
rec114 NA coding upstream 9582 34964659 ~ 35021304 (-)
LOC120556290 LOC102076597,LOC103462686,LOC102304084,LOC106922154,LOC106961725,LOC106587172,LOC107081502 coding upstream 9871 34964948 ~ 34969625 (-)
pkma pkm,LOC101466927,LOC102785629,LOC105930156,LOC107381266 coding upstream 184386 35139463 ~ 35159533 (-)
slc12a4 slc12a4 coding upstream 487752 35442829 ~ 35468809 (-)
slc6a2 slc6a2 coding upstream 534003 35489080 ~ 35523483 (-)
G31994 NA non-coding downstream 74816 34864877 ~ 34867518 (-)
G31907 NA non-coding downstream 654549 34287210 ~ 34287785 (-)
G31906 NA non-coding downstream 655254 34286288 ~ 34287080 (-)
G31881 NA non-coding downstream 761840 34179905 ~ 34180494 (-)
G31862 NA non-coding downstream 1086168 33855898 ~ 33856166 (-)
G32060 LOC103373785,LOC104925039 non-coding upstream 38380 34993457 ~ 35003451 (-)
G32070 NA non-coding upstream 115290 35070367 ~ 35070891 (-)
G32072 NA non-coding upstream 146863 35101940 ~ 35183773 (-)
G32077 LOC102786496,LOC102306459 non-coding upstream 179662 35134739 ~ 35135710 (-)
G32153 NA non-coding upstream 671454 35626531 ~ 35700759 (-)
G31955 NA other downstream 342793 34490660 ~ 34599541 (-)
LOC120555494 arpp19,LOC101481874,LOC103358163 other downstream 1125946 33806918 ~ 33816388 (-)
serf2 NA other downstream 1372955 33566371 ~ 33569379 (-)
znf710b LOC104936257,LOC102799163,LOC101477128 other downstream 1470999 33436811 ~ 33471335 (-)
wdr76 frmd5,LOC103354945,LOC103374291 other downstream 1588886 33342247 ~ 33353448 (-)
cylda cyld other upstream 1904470 36859547 ~ 36882795 (-)
nod2 nod2 other upstream 1928574 36883651 ~ 36891304 (-)
ss18l2 ss18l2 other upstream 2276064 37231141 ~ 37253426 (-)
LOC120556344 lrrc49,LOC102795887 other upstream 2833648 37788725 ~ 37827271 (-)
slc6a5 slc6a5 other upstream 4250198 39205275 ~ 39235746 (-)

Expression


Co-expression Network