spon1a (spon1)


Basic Information

Item Value
gene id spon1a
gene name spon1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 28985561 ~ 29064557 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795790.1
GTATGTCAAACGTGTCCTCCTCATTGGTGGGaatgtttgtctttgttctCAGTCTGTTGGTTCAGAGTATTCTATAGTCTGTCTGTAAATAGCTGTGGCcttggagacacacacacagcgctcaTTCCTCTCTTGGCCATTTCCTCGAACCTTTGCTCTCCTGCTCAGTCTAACCAGCGACACAATTCTCGTAAAGCGAGAGAGCACAGCGCatcccagtcactcctccttcTCGCTCTCTGTTACTCAAACCAGGATGGATCTACCCTCCTAGCAGAGAAGAAATCTACTTCAGCAGTTGGCAAGTTGGGTTCTCATTTAGGAGTGAAACAGGAGCTTAAACAAACATTCTCCCCCAGACAAGATTTCCTTCATCTCCGCGCATCAACTTGGCTTTCGGAAACCTACATGATGACAGCAACCGGGCTACAATCGCGCTTTATTCTCCTGCTCTGCCTTATCTCCATCGCAGCGTGCAATATGTTTGCATTCACCGAGGAGCCCTCTGAGAGAGCCGGGAAGGGAGACGGGTATTGTAGTCGGATATTACGGGCTCAGAGCAATCGGAAGGAGGGCAACAGCGAGTTTCGCCTCCGCGTTGAGGGAGACCCGGAGAGCTATCAGCCAGGGAGCACATACAGAGTGACTCTGATTACATCCAGCCCCTCCTACTTCAGAGGGTTCACCCTTATTGCCCTGAAGGAGGGTGcagaaggagacagagaggaggactACATTGGAAATTTCCAGatAATTGATGAGGAGGAAACACAGTTCATGACCAActgcccccctgcagtgacagAGAGCACTCCTCGCAGACGAACCAGCATCCAGGTGTTTTGGACTGCGCCTCCCAGTGGCTCTGGTTGTGTCTCTATTAAGGCCAGTATTGTGCAGAAGAGGATAATTAATTTCCAGGATGAAGGCTTACTCACCAAGCGAATGTGTGAGAAAGAATCCCTGTATGGAGACACTACAGATAAACCTCTGCTCAGCTGTTGTGCCTGTGGAACAGCAAAGTACAGAGTCACCTTCTATGGGAACTGGTCAGAGAAGTCTCATCCCAAAGACTATCCACGTCGTGCCAATCACTGGTCAGCCATCATTGGTGCCTCCCACTCTGAGAAATATGTGCTTTGGGAATATGGTGGCTTTGCTAGTGATGGAATTAAACAGATAGCTGAGCTGGGTTCCCCTGTCAAAATGGAGGAGGAGATCAGACAGAAGGGTGATGACGTCCTGACAGTCATCAAAATGAAAGCACAGTGGCCAGCCTGGCAACCACTTAATGTGCGGGCCCCCCCCTCAGCCGAATTCTCAGTGGACCAGAGCCGTCACCTTATGTCCTTCCTGACCATGCTGGGGCCCAGTCCAGACTGGAATGTGGGTTTGTCTGCTGAGGACTTGTGTACCAAGGAGTGTGGTTGGGTCCAGAGGGTGGTCCAGGACCTGATCCCCTGGGATGCAGGAACTGACAGCGGGGTGACATATGAGTCTCCCAACAAGCCCATTGTGACCCAGGACAAGATCCGTCCCCTGACCAGTCTGGATCATCCACAGAGCCCTTTCTATGACCCTGAAGGGGGCGCCATCACTCCAGTGGCTAGGGTCATTGTGGAACGCATCGCCAGAAAGGGCGAACAGTGCAACATTGTGCCGGACAATGTGGATGACATTGTAGCAGATATTGCccaggaggagaaagaggaagATGATACCCCTGAGACGTGTATCTACTCCAACTGGTCTCCATGGTCCGCCTGCAGCTCGGCCACTTGTGAAAAGGGCAAGCGTATGAGGCAGAGGATGTTAAAGGCCCAGTTGGACCTTAGTGTGCCCTGCCCACACACCCAGGACTTTGAGCCTTGCATGGGGCCTGGATGTAGTGATGAGGATGCTTCCACCTGTATGTTGTCAGAGTGGATCTCCTGGTCTCCCTGTAGTTTGACCTGCGGGATGGGCACACGTTCCCGGGAGCGTTATGTGAAGCAGTTCCCTGATGATGGCTCAGTCTGCACCCAGCCCACAGAGGACACTGAAAACTGTGTGGTCAATGAGGAATGCTCACCCAGCAGTTGTCTGGTTACAGAGTGGGGTGAATGGGATGTCTGCAGCGCCACTTGTGGTCTTGGCATGAAGAGGAGAGAGCGCATGGTGAAGATGCCTCCTGCAGATGGCTCCATTTGCGGGGCAGAGGTGCTAGAAGTGGAGAAGTGCATGATGCCAGAATGTCACACAATCCCCTGCATGCTGACTCCATGGTCTGACTGGAGTGACTGCAGTGTGACTTGCGGGAAGGGTTCGAGGACTCGACAGCGCATGCTCAAGTCCTCCGTGGAGCTGGGCGAGTGTACAGAAGACTTAGAACAGGTGGAGAAGTGCATGCTACCAGAGTGTCCCATAGACTGTGTCATGTCAGATTGGACTGAGTGGTCGGAGTGCAATAGGTCCTGTGGGAAGGGTCATACTATCCGGACACGCATGGTGAGGCTGGAGCCTCAGTTTGGAGGAGACCCGTGTGCTGAAACCATCCAGAGGAAGAAGTGTAAGATCAGGAAGTGCAACCGAGGACAAGCCAACAGTGATGAGAAGAAACGACGCAAGGAACAGCGTGAAAAGAGGAGGAGCAAACAGGGCCGAGCTGAGGTCACCTCCGAGCATCCAGGGTGTAAAATGAGGCCATGGTCGAGTTGGACAGAATGTACCAAGCTGTGTGGTGGAGGTATTCAAGAACGGCTCATGACGGTGAAGCAGAGGTTTAAGACCGCCCAGCTGTCCAGCTGCAAGGACAGGAAGGAGATCAGGGCTTGTAATGTGCACCCCTGCTAGGAAGTAGTAGGGGAAACGGGGGTGGTGTTGAAGGGAGGAAGGGATGACAGTGGGGCTGGGAACAGCACAGGGCATGGCACGCTGTCACACAATGATCCAATGCACTCTGTTTAGGGCTGAAATGGCACATGCTTGAATCTGTCTTGGTTAAATCCAGAGCTCAGGTCAGTTGTCATCAAGAGAATTTGAACTCAAAGATCTCACTGGAAAACTCTGGATTTAAACTAGGCTGATTCTTCTGGTTTCAAACTAGCTCTTATACACATAAGACTCTTTTGCAAGATTACTGTAAACTTGTTGTGGTATAATATATCTtgaaaaatataattatgaaatataaattgatttaataaaaagataaagaaCTGTTATATATTGTGGTATCCTTAAGTAGTACAGTATATTCCAGACTTTAAAGCACAGGTGCCCAGCCATTCCAGTGTTTTATACGCCTTCAATTGTTCAGTTGTTTCTAGGACACAAAATGCCCAGTTGGCTTTTTACCCAGCTATATTGTTGTACATGTAGATGCACCACGATTGAGATCTATATTATTTTGAGCATTGTtagaacattttgttatttttttcctgtgaaatgTTTTGATAAGAATGTGTCCCAAGATTCTTACCAAAGTCTTGTGTAGATGTTTTCTAGatgtctcctcctccttttcttctctgttCCTCTAACATATTAATATTTTGGAATAATATCACCTTTACAATAAAAGTAAACGTGACAACTgga

Function

symbol description
spon1 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in cell adhesion. Predicted to act upstream of or within positive regulation of protein binding activity; positive regulation of protein processing; and regulation of amyloid precursor protein catabolic process. Located in extracellular space. Colocalizes with collagen-containing extracellular matrix.

NR:

description
PREDICTED: spondin-1

GO: NA

KEGG:

id description
K24427 SPON1; spondin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795790.1 True 3582 mRNA 0.49 16 28985561 29064557

Neighbor

gene id symbol gene type direction distance location
syt9a LOC103368648,LOC102215875,LOC102789824,LOC101479370,LOC100702345 coding downstream 21888 28941368 ~ 28963673 (-)
ppfibp2a ppfibp2,LOC102297953,LOC101477983 coding downstream 47618 28916661 ~ 28937943 (-)
LOC120555776 cdyl2,LOC102790696 coding downstream 478320 28478868 ~ 28507241 (-)
cenpn cenpn,LOC102790979 coding downstream 515918 28466025 ~ 28469643 (-)
atmin atmin,LOC102791907 coding downstream 520783 28457400 ~ 28464778 (-)
LOC120555430 galnt8,LOC103358106 coding upstream 62231 29126788 ~ 29136061 (-)
kiaa1549lb kiaa1549l coding upstream 90415 29154972 ~ 29216732 (-)
depdc7a depdc7 coding upstream 219749 29284306 ~ 29294681 (-)
qser1 qser1 coding upstream 234798 29299355 ~ 29309999 (-)
eif3m eif3m coding upstream 253532 29318089 ~ 29326464 (-)
G30691 NA non-coding downstream 316597 28668598 ~ 28668964 (-)
G30644 NA non-coding downstream 593043 28342700 ~ 28392518 (-)
G30634 NA non-coding downstream 760114 28225093 ~ 28225447 (-)
G30586 NA non-coding downstream 947354 28037134 ~ 28038207 (-)
G30579 NA non-coding downstream 966486 28011000 ~ 28019075 (-)
G30759 NA non-coding upstream 75797 29140354 ~ 29140638 (-)
G30852 pax6 non-coding upstream 322200 29386757 ~ 29396683 (-)
G30898 NA non-coding upstream 550883 29615440 ~ 29616375 (-)
G30905 NA non-coding upstream 597111 29661668 ~ 29662088 (-)
G30969 NA non-coding upstream 1097923 30162480 ~ 30288433 (-)
mafa maf,LOC101477682,LOC100702616,LOC102790406,LOC102298902,LOC104927625,LOC102192535,LOC105919746 other downstream 138596 28770001 ~ 28846965 (-)
G30693 NA other downstream 315693 28669191 ~ 28669868 (-)
LOC120555801 LOC103366895,LOC102194278,LOC102079963,LOC102301182,LOC101475385,LOC102792507 other downstream 435561 28447956 ~ 28550000 (-)
dbndd1 dbndd1,LOC103136566 other downstream 912082 28046759 ~ 28073479 (-)
G30577 mc1r other downstream 983091 28001640 ~ 28002470 (-)
LOC120555471 hipk3 other upstream 153296 29217853 ~ 29269183 (-)
prrg4 NA other upstream 245993 29310550 ~ 29314709 (-)
elp4 elp4,LOC103373817 other upstream 337478 29402035 ~ 29461236 (-)
LOC120556497 csmd1,LOC102783723 other upstream 552763 29617320 ~ 29965747 (-)
fam120b fam120b,LOC104944276 other upstream 1450698 30515255 ~ 30532142 (-)

Expression


Co-expression Network