slc39a1 (LOC104951142,LOC103353202,LOC105936366)


Basic Information

Item Value
gene id slc39a1
gene name LOC104951142,LOC103353202,LOC105936366
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 17497420 ~ 17505106 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795865.1
ATCTTTCCAAACAACACTTCTGGGGCTGCTTCTGTCTCAGTGAAAGTCTTATCGGTTAGCTAGCGGTTAGCAAGCTCCGGCTTCATAAATAACTAATCAAATGATAGTACAGTTAGGGTTGACCTCACTCTTGAACTGACACTTTTATGCTACAAAATGGAATACCTGCTTCAGGTGAAAATAGGCGCTCTGATCGGTTTATTGCTCTTAACTCTTCTTTTTGGATTTATCCCTGCTCGAGTCAAATGGTTCAGAGACACAAACGGGTCAGAAATCCACCGCACAGTTCTGAGTCTGATCAGCTGTTTTGCCGGAGGGGTTTTCCTGGCAGCATGTCTGCTCGACATTATTCCAGATTATCTGTCAGACATCAACGCAGAGCTGCAAGCTCAGAAGGTGGAGATCAGTTTCCCCTTGCCAGAGTTCATCATGGCTGCCGGCTTCTTCATGGTCCTCATACTGGAGAGGATTGTCCTGAACTGTCGGGAGACGAGAGGGGCTCAGGAGGAGAGGGCACCCCTTATACCGGACACCAACAGGCATGGACACGGCCATGGAACAGGTCCAGATCTGGAGAGCAGCGGCCACCACGTCCACGTTGACTTTCAGGCTCACTCCCCCTTTCGCTCCTTCatgcttttcctctctctctcgctccacTCGGTTTTTGAGGGTCTTGCTATCGGCCTGCAGAGCACGGACTCAAAGGTATTAGAGATCTGCATCGCTATACTTGTCCACAAGAGCATCATAGTGTTCAGCCTGTCTGTGAAGCTGGTCCAGAGCGCAGTTCGTCCATTATGGGTGGCTGCTTACATCGGAGTGTTCGCCATGATGTCGCCTATAGGAATCGGCATTGGCATCAGCGTGACGGAGGCTCATCTAGCGGCTGGAGCACTCATCCAGGCCATCCTGGAGGGGCTTGCCGCAGGGACGTTTATTTACATCACCTTTCTAGAGATCCTCCCACATGAGCTCAACTCCCCCGGGAAGCAGCTTCTCAAGGTGCTCTTCATCCTGCTGGGCTTCAGCGTCATGGCATCGCTGACGTTTCTGGGCTGAGACTGGGAACAGACTGTATTTCAGCTGTCAGTATGTGACCTGGACACTTTGTGGCAACTTCTGCAGCTCACACTAACGTGTATACAAACTATCTTTATTTGAAAAGAAGACGTAGGTTTACAACCGCCCACCTCTGGAGTTTTTAATGCCTATGGAGCAACAGATGTTGGTGTTTTATTTCTTACAATATACTTTTAAAACCAtttttgtatatataatttctttttaaGAGGATTTTATGTAAAGAGGAACCGTTTACTGCAATGATAAGTTTGTCGAATGACAGTGGAAATAAGTGGCACATCACTGAGTCCCCTTATTTGTCACTGGCCTTGTTTTTCAAACATGCTTTGGACCTGCAAACAGAGCATCTGACCTTTGACACTGTTGAGGAAATCACTGAAAACAAAGGGCAATGTTGTATGTAAATCATACCttgtaattaattaaatcaCGCCAGTATATCAGTACCACCAGATCTTTAGATGTAGTTTGCCACATCAGGCTGCTTTCACTTGGAATTGCAAACATACTGGAATATCAACATGTTCATATTTTTCCAGTAAACTAGCGTATATGTAAACTGACTTCCTGATGCCTTGAGAATCTGTATGCCAAAATACTGTTTGCACTTTAAGGCTAAAATGTAATCGGCTTTTAACAACACACTATTTAAAAAGTATGATCCCTATTATTTACATTATGTTGACTCACTTAAGTCCATTCCGTTTTGCCACTCTGCTGCCTGCTTTATTAACTTTCTCAATGTAGAGTGCTTTTAGTTCTCTATTTTGATTGGACAAAATTAAGCTTTATCAGCACAAAGAGAAGTGCAAGATTAAGAATGAATTCTGCAAACGGATACGTATGGTATTTCACTAGCGCGCATGCTTGTATTTGTCTCAAGAACTCAAACCAAGCAGGACACCACACTACAGCACATTGGCCACATTATTTCAATGTTAGTAGAGTTAgtgaaaaacaacatattttaaaaacagtGTAGCACACGGACTCCAGCATGTTTCTGCCTTCCGCCTGCTTACACTCAAAGTCCAATTATTGTAAACtgtctattttttttgtcacacttCCTTTTTTAGTCATGGGATAGTCAGATGGTAGAACAAAGCAGGAAGTTGGAAGCTTTGTATTGGTTTATCCTtatacagcaaaaaaagaagTTGTGTAAGTACGATCAAATGTGCCAAGTctcaaatttacttttttttccccctccattCAAAGACATCTGATCAAGACTAATGAAACTGTTCCCCAAAGGGAAAACTACTCCTTGTTAATGTGATTTTGTGTAAAAATAACTTGTTTGTACGGTTCAAAAACATCAACTGTCTTTTTGTAAGCACACCTACATTATTTTGTGCCTTATGATTGTTAATCTCATGAAAAACTATTTTGATGTCTGTTGTGTAAAAATTGATCAAAGTAAAGATAAAAGAGGAATTGTCTGCA
>XM_039795867.1
ATCTTTCCAAACAACACTTCTGGGGCTGCTTCTGTCTCAGTGAAAGTCTTATCGGTTAGCTAGCGGTTAGCAAGCTCCGGCTTCATAAATAACTAATCAAATGATAGTACAGTTAGGGTTGACCTCACTCTTGAACTGACACTTTTATGCTACAAAATGGAATACCTGCTTCAGGTGAAAATAGGCGCTCTGATCGGTTTATTGCTCTTAACTCTTCTTTTTGGATTTATCCCTGCTCGAGTCAAATGGTTCAGAGACACAAACGGGTCAGAAATCCACCGCACAGTTCTGAGTCTGATCAGCTGTTTTGCCGGAGGGGTTTTCCTGGCAGCATGTCTGCTCGACATTATTCCAGATTATCTGTCAGACATCAACGCAGAGCTGCAAGCTCAGAAGATCAGTTTCCCCTTGCCAGAGTTCATCATGGCTGCCGGCTTCTTCATGGTCCTCATACTGGAGAGGATTGTCCTGAACTGTCGGGAGACGAGAGGGGCTCAGGAGGAGAGGGCACCCCTTATACCGGACACCAACAGGCATGGACACGGCCATGGAACAGGTCCAGATCTGGAGAGCAGCGGCCACCACGTCCACGTTGACTTTCAGGCTCACTCCCCCTTTCGCTCCTTCatgcttttcctctctctctcgctccacTCGGTTTTTGAGGGTCTTGCTATCGGCCTGCAGAGCACGGACTCAAAGGTATTAGAGATCTGCATCGCTATACTTGTCCACAAGAGCATCATAGTGTTCAGCCTGTCTGTGAAGCTGGTCCAGAGCGCAGTTCGTCCATTATGGGTGGCTGCTTACATCGGAGTGTTCGCCATGATGTCGCCTATAGGAATCGGCATTGGCATCAGCGTGACGGAGGCTCATCTAGCGGCTGGAGCACTCATCCAGGCCATCCTGGAGGGGCTTGCCGCAGGGACGTTTATTTACATCACCTTTCTAGAGATCCTCCCACATGAGCTCAACTCCCCCGGGAAGCAGCTTCTCAAGGTGCTCTTCATCCTGCTGGGCTTCAGCGTCATGGCATCGCTGACGTTTCTGGGCTGAGACTGGGAACAGACTGTATTTCAGCTGTCAGTATGTGACCTGGACACTTTGTGGCAACTTCTGCAGCTCACACTAACGTGTATACAAACTATCTTTATTTGAAAAGAAGACGTAGGTTTACAACCGCCCACCTCTGGAGTTTTTAATGCCTATGGAGCAACAGATGTTGGTGTTTTATTTCTTACAATATACTTTTAAAACCAtttttgtatatataatttctttttaaGAGGATTTTATGTAAAGAGGAACCGTTTACTGCAATGATAAGTTTGTCGAATGACAGTGGAAATAAGTGGCACATCACTGAGTCCCCTTATTTGTCACTGGCCTTGTTTTTCAAACATGCTTTGGACCTGCAAACAGAGCATCTGACCTTTGACACTGTTGAGGAAATCACTGAAAACAAAGGGCAATGTTGTATGTAAATCATACCttgtaattaattaaatcaCGCCAGTATATCAGTACCACCAGATCTTTAGATGTAGTTTGCCACATCAGGCTGCTTTCACTTGGAATTGCAAACATACTGGAATATCAACATGTTCATATTTTTCCAGTAAACTAGCGTATATGTAAACTGACTTCCTGATGCCTTGAGAATCTGTATGCCAAAATACTGTTTGCACTTTAAGGCTAAAATGTAATCGGCTTTTAACAACACACTATTTAAAAAGTATGATCCCTATTATTTACATTATGTTGACTCACTTAAGTCCATTCCGTTTTGCCACTCTGCTGCCTGCTTTATTAACTTTCTCAATGTAGAGTGCTTTTAGTTCTCTATTTTGATTGGACAAAATTAAGCTTTATCAGCACAAAGAGAAGTGCAAGATTAAGAATGAATTCTGCAAACGGATACGTATGGTATTTCACTAGCGCGCATGCTTGTATTTGTCTCAAGAACTCAAACCAAGCAGGACACCACACTACAGCACATTGGCCACATTATTTCAATGTTAGTAGAGTTAgtgaaaaacaacatattttaaaaacagtGTAGCACACGGACTCCAGCATGTTTCTGCCTTCCGCCTGCTTACACTCAAAGTCCAATTATTGTAAACtgtctattttttttgtcacacttCCTTTTTTAGTCATGGGATAGTCAGATGGTAGAACAAAGCAGGAAGTTGGAAGCTTTGTATTGGTTTATCCTtatacagcaaaaaaagaagTTGTGTAAGTACGATCAAATGTGCCAAGTctcaaatttacttttttttccccctccattCAAAGACATCTGATCAAGACTAATGAAACTGTTCCCCAAAGGGAAAACTACTCCTTGTTAATGTGATTTTGTGTAAAAATAACTTGTTTGTACGGTTCAAAAACATCAACTGTCTTTTTGTAAGCACACCTACATTATTTTGTGCCTTATGATTGTTAATCTCATGAAAAACTATTTTGATGTCTGTTGTGTAAAAATTGATCAAAGTAAAGATAAAAGAGGAATTGTCTGCA

Function

NR:

description
zinc transporter ZIP1 isoform X1

GO: NA

KEGG:

id description
K14709 SLC39A1_2_3, ZIP1_2_3; solute carrier family 39 (zinc transporter), member 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795865.1 True 2538 mRNA 0.42 4 17497420 17505106
XM_039795867.1 False 2532 mRNA 0.42 4 17497420 17505106

Neighbor

gene id symbol gene type direction distance location
LOC120556405 kif23,LOC104944434 coding upstream 770729 16701035 ~ 16726691 (+)
paqr5b paqr5 coding upstream 834691 16651817 ~ 16662729 (+)
glceb glce coding upstream 854573 16581385 ~ 16642847 (+)
coro2ba coro2b coding upstream 952629 16495835 ~ 16544791 (+)
LOC120556141 LOC104920616,LOC104955854,LOC103374661,LOC102791325,LOC102298654 coding upstream 1084849 16411033 ~ 16412571 (+)
rlbp1a LOC104951141,LOC103353204 coding downstream 2999 17508105 ~ 17513164 (+)
LOC120556258 LOC103353205,LOC104951143 coding downstream 29721 17534827 ~ 17548420 (+)
LOC120556259 LOC104951145 coding downstream 44884 17549990 ~ 17556201 (+)
mibp2 LOC100693649,LOC103353206,LOC102204817 coding downstream 58625 17563731 ~ 17566207 (+)
slc30a4 slc30a4 coding downstream 74209 17579315 ~ 17595161 (+)
G27895 NA non-coding upstream 1647 17494748 ~ 17495773 (+)
G27884 NA non-coding upstream 31776 17381379 ~ 17465644 (+)
G27879 NA non-coding upstream 183330 17313888 ~ 17314090 (+)
G27877 NA non-coding upstream 202469 17292715 ~ 17294951 (+)
G27840 NA non-coding upstream 324949 17172255 ~ 17172471 (+)
G27977 NA non-coding downstream 320758 17825864 ~ 17826910 (+)
G28066 slc24a5,LOC102781271 non-coding downstream 366640 17871746 ~ 17876173 (+)
G28065 NA non-coding downstream 383655 17888761 ~ 17889217 (+)
G28083 NA non-coding downstream 413794 17918900 ~ 17919196 (+)
LOC120555993 NA non-coding downstream 499722 18004828 ~ 18181201 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 2010969 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 2050928 15441455 ~ 15446492 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 2443798 15047877 ~ 15053622 (+)
kcna4 kcna4 other upstream 2532358 14889390 ~ 14965062 (+)
bbox1 bbox1,LOC102798250 other upstream 2762244 14708562 ~ 14735176 (+)
LOC120555788 NA other downstream 219439 17724545 ~ 17743448 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other downstream 1056767 18561873 ~ 18575942 (+)
LOC120555697 NA other downstream 1569202 19074308 ~ 19087064 (+)
G28581 NA other downstream 1982140 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 2007250 19512356 ~ 19520218 (+)

Expression


Co-expression Network