si:cabz01068815.1


Basic Information

Item Value
gene id si:cabz01068815.1
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13144507 ~ 13176403 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795868.1
CATTCAGTGTTGAAGGCTCCTCCCTCTgaactttgttaaaaaaaagatcctTGGAAATCTGTGTTTGCTGAACAATCCTACTTTCCTCATCTCACGCTCATCTCAGCCACGGACAGAACCTCATAGAAATATGTTTGTTGCGTGGATCCCATTGTTTCTTCTCCTGCTAGCTGCAGGGGCGAGGGCATTCATGATCCACAACAGCCAGCGCAGCCTGTGTCTGCaagattcagcagctgcaggtCAAGTCCTGCTGAAGACCTGCAACCTGGACTCAGAGTCTCAGCAGTGGATCTGGATTGATCAGGGCATGCTGATGTGTGTCCAATCATCCAGATGTCTGTCAGCCCTGCAGAGAGAGCCTGTCCAGACTCGTCCCTGCTGGGGGACCGAGGCGGATGCCACAGGGTTAATGTGGGATTGTGACAGGGGCAGACTGATCAGCAGGAACACTTCAATGCTGCTGTCAGTAGACGGCGGGCGTCTGATTCTCACACATGACGGCAAACACTCAAAGTGGAGATCTCTGGATGAGGGGGACATCTGCCATGAAAAACTCAGATCCAAGAGGGCATCTGATGAGTTTGAGGTTGCAGAGGAGCACACAGACAAGCTGGTGGCCATGACGGAGGAACAGAGAGAATATCTCCGCTGGTACTATCGCACAGAGGACCCGACCACATGGACTTTTGTGCTGCTGGGACTGGCCTTCGTCTGCCTTCTTGTTGGTTTTCTACTGCTAGGAATGGGAGCCATGGCCAACAAGAGCAGAAAGAAGATTGCTAAGTACAAGGCAGCAGCTGCGGCTCAGAAAGCCGAGGAGCTGCAGATGATTGCAGCGCTTCGAgacgacagcagcagcagcagcaaagcaTCGCTGGTGCTCGCCAGGCAGGGGCAGGGGAACGGGGGCCTGACGGAGCTCAGAGCAGGAGACATCAGGGTCACATGGAAGGATGGCAACACCTCCTGCCTGTACCCTGACACTGCAGCACAGGAggagaaccagaaccaggaggagaaccagaaccaggaggagaaccagaaccaggaggAGAACCAGGAGCAGGAGGAGAACCAGGAGCAGGAGTCAGCTGTGGAGCCAGTTAAGACGACAGAGTGAAGAGTTGAGACACCAACAGCAGCTGGGACAGTGTTTACCAAGAACTTGTTAGGGTTTAACCCTTCACTGCCTGCAGGATGCTAACTGTATTTACAACTTTGACTGGCAGCTAATAAAGcattaaaacaca
>XM_039795869.1
CAACCCGGTGTGCAGCCACTTGATATGTTTGTTGCGTGGATCCCATTGTTTCTTCTCCTGCTAGCTGCAGGGGCGAGGGCATTCATGATCCACAACAGCCAGCGCAGCCTGTGTCTGCaagattcagcagctgcaggtCAAGTCCTGCTGAAGACCTGCAACCTGGACTCAGAGTCTCAGCAGTGGATCTGGATTGATCAGGGCATGCTGATGTGTGTCCAATCATCCAGATGTCTGTCAGCCCTGCAGAGAGAGCCTGTCCAGACTCGTCCCTGCTGGGGGACCGAGGCGGATGCCACAGGGTTAATGTGGGATTGTGACAGGGGCAGACTGATCAGCAGGAACACTTCAATGCTGCTGTCAGTAGACGGCGGGCGTCTGATTCTCACACATGACGGCAAACACTCAAAGTGGAGATCTCTGGATGAGGGGGACATCTGCCATGAAAAACTCAGATCCAAGAGGGCATCTGATGAGTTTGAGGTTGCAGAGGAGCACACAGACAAGCTGGTGGCCATGACGGAGGAACAGAGAGAATATCTCCGCTGGTACTATCGCACAGAGGACCCGACCACATGGACTTTTGTGCTGCTGGGACTGGCCTTCGTCTGCCTTCTTGTTGGTTTTCTACTGCTAGGAATGGGAGCCATGGCCAACAAGAGCAGAAAGAAGATTGCTAAGTACAAGGCAGCAGCTGCGGCTCAGAAAGCCGAGGAGCTGCAGATGATTGCAGCGCTTCGAgacgacagcagcagcagcagcaaagcaTCGCTGGTGCTCGCCAGGCAGGGGCAGGGGAACGGGGGCCTGACGGAGCTCAGAGCAGGAGACATCAGGGTCACATGGAAGGATGGCAACACCTCCTGCCTGTACCCTGACACTGCAGCACAGGAggagaaccagaaccaggaggagaaccagaaccaggaggagaaccagaaccaggaggAGAACCAGGAGCAGGAGGAGAACCAGGAGCAGGAGTCAGCTGTGGAGCCAGTTAAGACGACAGAGTGAAGAGTTGAGACACCAACAGCAGCTGGGACAGTGTTTACCAAGAACTTGTTAGGGTTTAACCCTTCACTGCCTGCAGGATGCTAACTGTATTTACAACTTTGACTGGCAGCTAATAAAGcattaaaacaca

Function

NR:

description
uncharacterized protein LOC109880828

GO: NA

KEGG:

id description
ko00830 Retinol metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko05204 Chemical carcinogenesis - DNA adducts

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795868.1 True 1253 mRNA 0.53 6 13144507 13176403
XM_039795869.1 False 1147 mRNA 0.54 6 13161130 13176403

Neighbor

gene id symbol gene type direction distance location
LOC120556474 NA coding upstream 53072 13089535 ~ 13091435 (+)
LOC120556313 LOC104939823,LOC100707594,LOC101479997,LOC105924362 coding upstream 73175 13065952 ~ 13071332 (+)
LOC120555527 NA coding upstream 581954 12556047 ~ 12562553 (+)
LOC120556595 NA coding upstream 1112779 12031621 ~ 12031728 (+)
minar1 kiaa1024,LOC107562943,LOC102799073 coding upstream 2006109 10934633 ~ 11138398 (+)
kbtbd13 NA coding downstream 28436 13204839 ~ 13208335 (+)
spg21 spg21,LOC102788283 coding downstream 75762 13252165 ~ 13271218 (+)
si:ch211-102l7.3 LOC102292170 coding downstream 501729 13678132 ~ 13696767 (+)
slc1a2a LOC104925837,LOC100698156,LOC102211357,LOC103366006,LOC104946114,LOC101471102 coding downstream 521243 13697646 ~ 13723065 (+)
LOC120556255 apip,LOC102794906 coding downstream 574013 13750416 ~ 13765627 (+)
G27085 NA non-coding upstream 35317 13108962 ~ 13109190 (+)
G27081 NA non-coding upstream 47377 13096831 ~ 13097130 (+)
G27064 NA non-coding upstream 119691 13024501 ~ 13024816 (+)
G27028 NA non-coding upstream 245320 12898975 ~ 12899187 (+)
G27023 NA non-coding upstream 273636 12870644 ~ 12870871 (+)
LOC120556095 NA non-coding downstream 25014 13201417 ~ 13202220 (+)
G27129 NA non-coding downstream 70297 13246700 ~ 13248009 (+)
G27161 NA non-coding downstream 202643 13379046 ~ 13381280 (+)
G27163 NA non-coding downstream 214753 13391156 ~ 13391364 (+)
G27164 NA non-coding downstream 225323 13401726 ~ 13401935 (+)
G27086 NA other upstream 34168 13109757 ~ 13110339 (+)
lto1 oraov1 other upstream 1231785 11903272 ~ 11912722 (+)
aldh1a3 aldh1a3,LOC106562593,LOC103357544,LOC104941118 other upstream 3284507 9814697 ~ 9860000 (+)
asb7 asb7,LOC102792420 other upstream 3467480 9653578 ~ 9677027 (+)
adamts17 adamts17 other upstream 3540045 9391108 ~ 9604462 (+)
LOC120556202 NA other downstream 58832 13235235 ~ 13237819 (+)
slc35c1 slc35c1 other downstream 495074 13671477 ~ 13676613 (+)
lrrc4cb LOC104946080,LOC107396660,LOC103367510,LOC108234802,LOC101071141 other downstream 633532 13809935 ~ 13856423 (+)
bbox1 bbox1,LOC102798250 other downstream 1532159 14708562 ~ 14735176 (+)
kcna4 kcna4 other downstream 1712987 14889390 ~ 14965062 (+)

Expression


Co-expression Network