LOC120556334 (LOC104919371,LOC103363468,LOC104965174,LOC102308327)


Basic Information

Item Value
gene id LOC120556334
gene name LOC104919371,LOC103363468,LOC104965174,LOC102308327
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 24617556 ~ 24621883 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795875.1
aacaCGTAGCCTACAGCGCTGGTCTGCACCAACGTTTTACAACTTTAATAATGGGTTTGATGAAGTGCAGTGCGACTTTGTCGCTTTTATGGCGTGTTGCTCCATCTGTAGGTTCATTAAAAGCAACCAAAAAATGATCCGGGTTATTGATCAAGAGCAGAACAAAGTTCACCAACAGTTGCCTCTGACTTTTCTGGCCAATCTTAGCTTTAGAGGCGGGGGGATAGAAAATGTGCAAGATGATAGCCTACATATGTGCTTCGGTTGCTCTGAGGAGAAGCCGGAGTCAGCGGAGGTAGTCTAGCAGTGGAAGAGCAACTTTTAGAGAAGATGGTTTCAGTGAAATCGCCGTATCTGGTGCCGGTGTCCTGCGCCCAGGCTCTGCTCGGTGTGGGCTGTCTAACTGTCGCCTGCCTCGCTTTCCTGCTGGTTCGCCAGCTCGTCAAGCAGAGAAGACCCCCGGGCTTTCCTCCTGGTCCATCTCCCATCCCAGTGATAGGGAACATCATGTCTCTGGCCACCGAGCCGCACGTCTTCCTCAAGAAGCAGAGTGAAGTTCATGGACAGATTTTCAGTCTCGACCTGGGAGGCATCTTGACAGTGGTATTAACTGGATATGACTGCGTCAGGGAATGCCTTTACCATCAAAGTGAGGTGTTTGCTGATCGCCCATCGCTGCCTTTATTCataaaaatgaccaaaatggGTGGGCTTCTCAATTGTAAATATGGCAAAGCCTGGATTGAACACCGTAAACTGGCTTGCAACTCTTTCCGTTATTTCGGCAGCGGCCAGAGACAGTTTGAAAGGAAGATCTCGGAGGAGTGCATGTTCTTTGTCGATGCCATTGACGAACACAAAGGAAAGCCCTTCAACCCCAAACACCTGGTGACCAACGCTGTGTCCAACATTACCAACCTGATCATTTTTGGACAGCGTTTTACTTACGACGACCGCAACTTCCAGCACATGATTGAGATATTCAGTGAGAACGTGGAGCTAGCAGTCAGCGGCTGGGCCCTCCTCTACAACGCCTTCCCTTGGATTGAGTATGTGCCCTTTGGAAAACACCAGAAGCTGTTCCGCAATGCTGCTGAGGTGTATGACTTCTTGCTGCAGGTTATAAAGGATTTCTCACAGGGCAGGGTGCCACATGCACCTCGCCACTATGTTGATGCCTATTTGGATGAGTTGGAGCAGAATGCAGGAGAACCCAGCTCTTCTTTTTCCTATGAGAACCTCATCTACTCAGTGGGTGAGCTTATTATTGCTGGCACAGAGACCACTACTAACACCCTGCGATGGGCCATGCTGTACATGGCTCTCTACCCCAACATACAAGAGAGGGTGCACAGAGAGATCGACAGCTTGCTGGCCAATGGGAGAGCACCCACTTTTGAGGACAAACAGAAGATGCCTTACGTAGAGGCTGTTCTACACGAGATCCTTCGCTTTTGCAACATTGTCCCACTTGGTATTTTCCGTGCCACCTCCCAGGATGCAAAAGTCAACGGATACACAATTCCCAAAGGCACCATGGTGATCACAAACCTCTACTCAGTGCACTTTGATGAGAAGTACTGGAACGATCCAGGCGTTTTCTCACCACAGAGGTTTCTGGACAGCAATGGCAACTTTGTGAGGCGTGAGGCATTCCTGCCATTCTCCTTGGGGAGGCGTTGCTGCCTGGGCGAACAGCTGGCCAGGATGGAGATGTTCCTATTTTTCACCACTTTGCTGCAGAGGTTTCATCTTCAGTTCCCTCCAGGAACAATTCCCACTGTCACTCCCAAACTGGGCATGACCTTACAGCCCAAACCTTACTCCATCTGTGCTGTCCGCAGGCAGCAGAAAAGTCCCTGCTCTTGAGACGCTCCTTATCACGGGTGGGCAAGCAGGAATTTATAACAGCTTGTTCAACTGTTCAAGCCAGAATTTGACTATTTTGCACAGCAATGCAACCACATGATACAGCTGCAAAAAAACTGTATCGCTCTGGATTGTAGCGTCCAGTTCCACTGCGTCACAGTTTTCAGTGACAAAAGTAGCTTGACACACGGACACGTAATCCAGTTTATTCAATTACTCTTGAATTCTTTTACTGAGCAAAATGCATGTTTGcacaatacttttttattttttttattttaaagattattttggggggcttttccctttattacatagagacagtggataggcatgaaagggggagagagatgggggatgacacgcagcaaagggcatcagatttgaacccgcgccgctgcaggactcagccaaaatggggcgaacgctcttactgggtgagatAGAGGCCGCCCCAGCGCAATACCTTTAAGCAGCACGGGAGGCGACACGACTCGATGCTGAAAGCTGACATTCTGGGAATACTCAGGTGCTATTTTCTCATCATGTCTGTGATCCTTGGTGTGGTGGCGATGGGTTAGGTAGATGTCAATGATTGATAGTAAGTACACCTTTGATGGTTCATAGCCCTCCATCCTCAGAAAAATGACACCACTGATTTATACTGGTGAGGTGAAATGGGACTTTCCAGGAAATTTCTGTACACTGTGTTAGAGCTGGACGAGGGCCAAGGTTTACGTCATGTGGACTGACTCTGACCTTCTCCAGGGATAGCGCTCTCTGGAAATGAAGGGTAATGTAACCCTGGTGGATTTCTAGAAACTGACTATGCAACACT

Function

NR:

description
PREDICTED: vitamin D 25-hydroxylase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07419 CYP2R1; vitamin D 25-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795875.1 True 2707 mRNA 0.48 5 24617556 24621883

Neighbor

gene id symbol gene type direction distance location
caprin1a LOC103356992,LOC104943339 coding upstream 395110 24206711 ~ 24222446 (+)
ext2 ext2 coding upstream 467651 24127460 ~ 24149905 (+)
dagla dagla coding upstream 491736 24093243 ~ 24125820 (+)
LOC120556108 cpsf7,LOC102795402 coding upstream 531741 24080649 ~ 24085815 (+)
syt7b syt7,LOC101476086,LOC102796193,LOC100697404,LOC108250198,LOC103462425 coding upstream 546407 23970698 ~ 24071149 (+)
copb1 copb1 coding downstream 66143 24688026 ~ 24700170 (+)
rras2 rras2 coding downstream 80974 24702857 ~ 24737053 (+)
tub tub,LOC102789439 coding downstream 116745 24738628 ~ 24787768 (+)
ipo7 ipo7 coding downstream 562797 25184680 ~ 25200964 (+)
swap70a swap70,LOC104918979 coding downstream 580142 25202025 ~ 25215060 (+)
G29579 NA non-coding upstream 12358 24602982 ~ 24605198 (+)
G29535 nucb2,LOC103363466,LOC101472988,LOC102310665,LOC105916282,LOC101163155,LOC107085590 non-coding upstream 389640 24226851 ~ 24227916 (+)
G29477 NA non-coding upstream 466801 24150510 ~ 24150755 (+)
G29460 NA non-coding upstream 655224 23960107 ~ 23962332 (+)
G29441 NA non-coding upstream 738114 23816706 ~ 23879442 (+)
G29685 NA non-coding downstream 476287 25098170 ~ 25099593 (+)
G29747 NA non-coding downstream 599163 25221046 ~ 25221437 (+)
G29786 eif4g2,LOC102309340 non-coding downstream 795924 25417807 ~ 25420506 (+)
G29787 NA non-coding downstream 803026 25424909 ~ 25426358 (+)
G29790 NA non-coding downstream 815767 25437650 ~ 25437859 (+)
sox6 sox6,LOC103363464 other upstream 161868 24320064 ~ 24455688 (+)
plekha7b NA other upstream 302911 24235723 ~ 24314645 (+)
G29433 NA other upstream 885085 23727012 ~ 23732471 (+)
igdcc3 igdcc3 other upstream 1100293 23443149 ~ 23517263 (+)
G29292 NA other upstream 1480529 23136732 ~ 23137027 (+)
pkd1l2a vat1l,pkd1l2,LOC102776808 other downstream 1233956 25855839 ~ 25883360 (+)
nfat5b nfat5 other downstream 1261571 25883454 ~ 25927726 (+)
LOC120556198 LOC103371916,LOC104965843 other downstream 2673874 27295757 ~ 27316181 (+)
nedd4a nedd4,LOC103371920,LOC102785817 other downstream 2696487 27318370 ~ 27351837 (+)
LOC120555577 NA other downstream 2787157 27409040 ~ 27410250 (+)

Expression


Co-expression Network