vstm2b (vstm2b)


Basic Information

Item Value
gene id vstm2b
gene name vstm2b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 12489220 ~ 12493171 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795896.1
CCCGAGACCTCTGTTGATCGCGCCTCCTCGCGATGCGCTCGCGCTCACACCAATCGGGAAGCCTCTGGGTCTGACAGCTGGCGGACGTACGGGGGAACCATAAACACTGACGAGAGGACGAGCGGCTCTTCCCAGAAATTATCCCTGTTTGACAGCGTCAGGAGGTGTCCGTGTCTCCTCTGCGGCTtttgctccctctctctctcacacacacacacacacacacacacacagaggatagTTATGTGATAGGTTGGAGCGGAGCCCGGGggtctgatgatgatgatgataaggaTGAAGAGCAGGTTTCTGCCGCTGACCGGGAAGTTCCAACCGACGCTCAGTGCGGAATAAAGGAGCCCCGTTTTCACTGAGGGATTAATTCACTTCTTTGATTGTAGAATTCCTCCTTTCTTCTTGTTTCTTGGCTAAAATGGGGGTTTCATTCTGCGGGCGGTAGCCTACATGTTGCCGGGCTGACGGATGGGGATCTTCTATGGCCATATCTGGACTGATTAGAGTTAACAGGACGCAACACATCCAGGTCAAATGAGCGTCTAATGTGTGCTGAGTGTGACATGGGGAATACGGGACTATTCAGCCTCCTTTATTACTTCATTCTCAACTGGCCCTTTATGATTTGTGCAAATGCTGCATTTACCGAGGTCCCTAAGGATATCAGTGTGGGGGAGGGCGAGGATGTGGAGATGCCCTGCGCCTTCAGGGCGCTCAGCTCAGCGCCCATGTCTCTGGAGATCCAGTGGTGGTACCTGAAGCACGCTGGGCCCAAAGATCTGCCTCAAGAGCTGCAGATCAGCTCGCCGGCCAACACAGCACAGgtcATTCCAAGGGAAGCCACCAAAATCAGTGCTGTGCGTGTTCAGGGCAACGCCATCTCACACCGCCTCAGCCTGTCCCGGGTGAAGAAGGAGGACGAGGGTGTGTACGAGTGCCGCGTGTCCGACCTGTGGGCTGACGACGCCGACGCCACCGAGTTCACGGTCCGCGCCACGCTGCGGGTCACGCTGGGGGGGGGCGGCGGCATGGTGGCGGAGGAGGCCGTGTCGCACATCCAGAACCGCTGGCCGCTGAGGAGCAGCAACACAGCGCTGGGAGGGGGCGGTGCTGGGAGGGCCACCGTGGAGCCGGGCCGGGGGGGCCAGCGGGGGCCTGCCCCCGCCCCGGCCAGCTCCACCAGCAGCACCTCGCTGGCCAAGTCGTCAGCTTCAGCGCTGCCAGGGAGCGCTGCCATCCTCCGGCAGCAGCTTGGAGCGGGTGAGTGGGGGGTGCAGGTtgatgtttctctgtgtgttgtggtaCAGGATGCTTCGGTCCTTCCATCAGTTGTAACGTTGAGGCCTCGCTGCCATGTCAGACTGGACACCGCATACTTCAAATAATCATATTGTCCTGTTAATATTCTGGaattacttaaagt

Function

symbol description
vstm2b Predicted to be integral component of membrane.

NR:

description
PREDICTED: V-set and transmembrane domain-containing protein 2B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795896.1 True 1438 mRNA 0.58 5 12489220 12493171

Neighbor

gene id symbol gene type direction distance location
LOC120555959 NA coding downstream 310549 12157744 ~ 12178671 (-)
ccnd1 ccnd1 coding downstream 502293 11980178 ~ 11986927 (-)
fgf3 fgf3 coding downstream 692001 11794280 ~ 11797219 (-)
fgf4 fgf4,LOC104954779 coding downstream 704783 11780768 ~ 11784437 (-)
fgf19 fgf19 coding downstream 748300 11733441 ~ 11740920 (-)
rasl12 NA coding upstream 695243 13188414 ~ 13198636 (-)
ubap1lb ubap1l,LOC107685210,LOC106932412,LOC103156499,LOC105938593 coding upstream 715158 13208329 ~ 13238252 (-)
pdcd7 NA coding upstream 747515 13240686 ~ 13248416 (-)
LOC120555522 NA coding upstream 792070 13285241 ~ 13294261 (-)
LOC120556590 NA coding upstream 796039 13289210 ~ 13289264 (-)
LOC120555517 NA non-coding downstream 130589 12356686 ~ 12358631 (-)
G26925 NA non-coding downstream 182340 12306659 ~ 12306880 (-)
G26923 NA non-coding downstream 205588 12283382 ~ 12283632 (-)
G26921 NA non-coding downstream 209807 12279149 ~ 12279413 (-)
LOC120556136 NA non-coding downstream 221300 12267143 ~ 12267920 (-)
G26974 NA non-coding upstream 71100 12564271 ~ 12564883 (-)
G26982 NA non-coding upstream 112451 12605622 ~ 12606134 (-)
G26983 NA non-coding upstream 116926 12610097 ~ 12610432 (-)
LOC120556302 NA non-coding upstream 177350 12670521 ~ 12672689 (-)
G27001 NA non-coding upstream 182809 12675980 ~ 12676229 (-)
G26924 LOC108281047 other downstream 184396 12304539 ~ 12304824 (-)
G26891 NA other downstream 527448 11960701 ~ 11961772 (-)
LOC120555651 NA other downstream 819951 11643231 ~ 11669269 (-)
mtfmt mtfmt,LOC102776665,LOC102776373 other downstream 978920 11476506 ~ 11510300 (-)
G26298 NA other downstream 3192474 9295068 ~ 9296746 (-)
G27075 LOC104939823,LOC100707594 other upstream 576825 13069996 ~ 13095766 (-)
G27321 NA other upstream 1976587 14469758 ~ 14470345 (-)
LOC120556476 NA other upstream 2084856 14578027 ~ 14580011 (-)
G27420 NA other upstream 2349542 14842713 ~ 14843905 (-)
cfap70 LOC103368539,LOC102222702,LOC102790175,LOC102296598,LOC102204478,LOC104922799 other upstream 2557491 15050662 ~ 15078830 (-)

Expression


Co-expression Network