tspan4a (tspan4,LOC102780031,LOC107381782)


Basic Information

Item Value
gene id tspan4a
gene name tspan4,LOC102780031,LOC107381782
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15181720 ~ 15356059 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795897.1
ggggggttgttacCTCCCGCCTGAAAGCAGCTGCTTAGGAATGTCTCATGAGACCAGGTAGGACGTTTCGGGAGCTTTTTGCCAGCCCAAAGCAGCTGGAGAGGTTGAGTCGATGCCCTCCAGTCGTTTTGCCCGATTGAACCGTTACGAGATGAAACCTGCAAACCAGCTTATCTCTCAGAGCATGACACCTGTATTTGAGCGACTACAGAGAGGGAAACAGGGACGTgcagatgtgtttgtgtgtgttgggattATGTCCTAAATACACAGAATTACACAGGTGTTGCTCCAGGATTATGCAAAGTCTCCTGCTGAATATAGTAACTATAGGATTAAAGGGAGGAACTCAAGTCAAGTGAATGGCAGCACTTTATCTTTTACAAATTAAGCCAGATCAAGTGTAATCACACccgcggtaaaaaaaaaaaaaattgaatcagCCATTCCAGGGTTTgataggggttagggttaactATTTTTAGGTAAACTGGGGATAGGTTCGTAAACACTAACAAAATCCATCACTCAGCGCCAAGTGGAATAACTTCTGCTCCCTTGTTGTGGACTTTGCTCCGACCTGAAGTACACAGAGTGACTATTACAGCCTCTGAAAGGCTTATTCAGCTTCCATAATGAGACGCTCGAGCACAGACGAGACTCCGTACCGGCGCAGTCCGTCTCTGGACAGCAAACCCGACACGCCGCCGTTCACTTCTGGCTTTCACCGCTTCAGCGGGGAGTTTGAGTACAAGCGGCCGCCGTTTGCGTTCGGCTTCCACACGACAAAAGAGCCGCAGGCGTCCAAGGGGCGCTACGCCCAGGGGAAGAAGTATGTGGTGTTTTACCTGGACCTCTCCTTCATATTCCTCCTAGAACTGCGGCGCTGCAGGATGGCCGAGGGTTGCATGATGGCCCTGCGATATGGAATGGTCTTCTTCAACCTCCTTTTCTGGTTGGGAGGATGTGGCATACTGGGGGTGGGAGTCTGGCTCTCCGTGACCCAGGGAAACTTTGCCACCCTATCATCATCCCTTCCCTCCTTGTCGGCAGCCAACCTGCTCATCGCAGTGGGGACCATCATCATGGTGATCGGCTGTTTGGGCTGTGTGGGAGCTGTCAAAGAGAGCCGTCCTTTGCTGCTGACGttcttcatcctcctcttgctcATCTTCTGCCTGGAGATTCTGTCTATCATGCTTTTCTTCATCTACCAAGACGAGATCGATCACTACGCCCAGAGGGATCTGAAGAAGGGCCTCCAGCTCTTTGGCACAGAGGGAAACGTGGGTCTGACCAACGCCTGGATGATAGTACAAACTGATTTTCGCTGCTGTGGAGTAACCAACCACACAGACTGGTTCGAGGTTTACAATGCCACCCGTGTGCCAGACTCCTGCTGCCTGGAGTACAGCGACAACTGTGGCCTGGACAACCCAGGAACATGGTGGACAGCGCCGTGCTACGAGCGTGTAAAGGACTGGCTTAATGAGAACCTGGTGGCCCTTTGGATCTTTGCTCTATGCACAGCACTTACTCAGaTCCTGGGCCTGGTTTTCTCCATGACGATGTTCTGTCAGGCAGTGAAAGTAGAGACCTTTTACGCCTAGCCATCGTTCTCTCTGCCCTTCAGCACATTTGGATTGTTTCTCATCAGAGAGGGACGAATATAGACCcacccaccctcctcctcctcctcctcctcctcctcctcctcttcccgaCAGACTCTTCTTTCCTTGTCCTCTCTGTGACATTCCCTCTCAGATGTCACCAGTTCACAGTTTTTCTGCTAACTATCAACAAGCACAGTGTCAGTGTATTATCTGAGTTGAGTTGGTTCCTATGGTTTGCTCTGTGTCAAAATGCTAATTTCTGTGATACATTTTATGAAGCAGTATTATgaacatgtataaaaaaaaaaaaatgtaaccccTTTTTTTAATATGTGTTTTGTTCTAAATTATTTTATGGCTTGtatgtgttttaaaaatgagAGCTACAGTTGGGGACTATGTGAAGTGCTGCAAGTGCATGTCTCCTGCAATGATgtgtaataaatgtttttggctCGACTAAA
>XM_039795898.1
ATACAATGTGCCCTTATGTTAGAACTGCGGCGCTGCAGGATGGCCGAGGGTTGCATGATGGCCCTGCGATATGGAATGGTCTTCTTCAACCTCCTTTTCTGGTTGGGAGGATGTGGCATACTGGGGGTGGGAGTCTGGCTCTCCGTGACCCAGGGAAACTTTGCCACCCTATCATCATCCCTTCCCTCCTTGTCGGCAGCCAACCTGCTCATCGCAGTGGGGACCATCATCATGGTGATCGGCTGTTTGGGCTGTGTGGGAGCTGTCAAAGAGAGCCGTCCTTTGCTGCTGACGttcttcatcctcctcttgctcATCTTCTGCCTGGAGATTCTGTCTATCATGCTTTTCTTCATCTACCAAGACGAGATCGATCACTACGCCCAGAGGGATCTGAAGAAGGGCCTCCAGCTCTTTGGCACAGAGGGAAACGTGGGTCTGACCAACGCCTGGATGATAGTACAAACTGATTTTCGCTGCTGTGGAGTAACCAACCACACAGACTGGTTCGAGGTTTACAATGCCACCCGTGTGCCAGACTCCTGCTGCCTGGAGTACAGCGACAACTGTGGCCTGGACAACCCAGGAACATGGTGGACAGCGCCGTGCTACGAGCGTGTAAAGGACTGGCTTAATGAGAACCTGGTGGCCCTTTGGATCTTTGCTCTATGCACAGCACTTACTCAGaTCCTGGGCCTGGTTTTCTCCATGACGATGTTCTGTCAGGCAGTGAAAGTAGAGACCTTTTACGCCTAGCCATCGTTCTCTCTGCCCTTCAGCACATTTGGATTGTTTCTCATCAGAGAGGGACGAATATAGACCcacccaccctcctcctcctcctcctcctcctcctcctcctcttcccgaCAGACTCTTCTTTCCTTGTCCTCTCTGTGACATTCCCTCTCAGATGTCACCAGTTCACAGTTTTTCTGCTAACTATCAACAAGCACAGTGTCAGTGTATTATCTGAGTTGAGTTGGTTCCTATGGTTTGCTCTGTGTCAAAATGCTAATTTCTGTGATACATTTTATGAAGCAGTATTATgaacatgtataaaaaaaaaaaaatgtaaccccTTTTTTTAATATGTGTTTTGTTCTAAATTATTTTATGGCTTGtatgtgttttaaaaatgagAGCTACAGTTGGGGACTATGTGAAGTGCTGCAAGTGCATGTCTCCTGCAATGATgtgtaataaatgtttttggctCGACTAAA
>XM_039795900.1
agagagagggagagagagagagagagaaacagcgaGGGAGTCTGTGGAGAGGAACAacttgggaaggaacttttgTCATACACTGAGGAAAGAAGAGGGACAgccgggagagagagagagtagagagtGAGATAAGTGAGTGAACTGCGGCGCTGCAGGATGGCCGAGGGTTGCATGATGGCCCTGCGATATGGAATGGTCTTCTTCAACCTCCTTTTCTGGTTGGGAGGATGTGGCATACTGGGGGTGGGAGTCTGGCTCTCCGTGACCCAGGGAAACTTTGCCACCCTATCATCATCCCTTCCCTCCTTGTCGGCAGCCAACCTGCTCATCGCAGTGGGGACCATCATCATGGTGATCGGCTGTTTGGGCTGTGTGGGAGCTGTCAAAGAGAGCCGTCCTTTGCTGCTGACGttcttcatcctcctcttgctcATCTTCTGCCTGGAGATTCTGTCTATCATGCTTTTCTTCATCTACCAAGACGAGATCGATCACTACGCCCAGAGGGATCTGAAGAAGGGCCTCCAGCTCTTTGGCACAGAGGGAAACGTGGGTCTGACCAACGCCTGGATGATAGTACAAACTGATTTTCGCTGCTGTGGAGTAACCAACCACACAGACTGGTTCGAGGTTTACAATGCCACCCGTGTGCCAGACTCCTGCTGCCTGGAGTACAGCGACAACTGTGGCCTGGACAACCCAGGAACATGGTGGACAGCGCCGTGCTACGAGCGTGTAAAGGACTGGCTTAATGAGAACCTGGTGGCCCTTTGGATCTTTGCTCTATGCACAGCACTTACTCAGaTCCTGGGCCTGGTTTTCTCCATGACGATGTTCTGTCAGGCAGTGAAAGTAGAGACCTTTTACGCCTAGCCATCGTTCTCTCTGCCCTTCAGCACATTTGGATTGTTTCTCATCAGAGAGGGACGAATATAGACCcacccaccctcctcctcctcctcctcctcctcctcctcctcttcccgaCAGACTCTTCTTTCCTTGTCCTCTCTGTGACATTCCCTCTCAGATGTCACCAGTTCACAGTTTTTCTGCTAACTATCAACAAGCACAGTGTCAGTGTATTATCTGAGTTGAGTTGGTTCCTATGGTTTGCTCTGTGTCAAAATGCTAATTTCTGTGATACATTTTATGAAGCAGTATTATgaacatgtataaaaaaaaaaaaatgtaaccccTTTTTTTAATATGTGTTTTGTTCTAAATTATTTTATGGCTTGtatgtgttttaaaaatgagAGCTACAGTTGGGGACTATGTGAAGTGCTGCAAGTGCATGTCTCCTGCAATGATgtgtaataaatgtttttggctCGACTAAA
>XM_039795901.1
agagagagggagagagagagagagagaaacagcgaGGGAGTCTGTGGAGAGGAACAacttgggaaggaacttttgTCATACACTGAGGAAAGAAGAGGGACAgccgggagagagagagagtagagagtGAGATAAAACTGCGGCGCTGCAGGATGGCCGAGGGTTGCATGATGGCCCTGCGATATGGAATGGTCTTCTTCAACCTCCTTTTCTGGTTGGGAGGATGTGGCATACTGGGGGTGGGAGTCTGGCTCTCCGTGACCCAGGGAAACTTTGCCACCCTATCATCATCCCTTCCCTCCTTGTCGGCAGCCAACCTGCTCATCGCAGTGGGGACCATCATCATGGTGATCGGCTGTTTGGGCTGTGTGGGAGCTGTCAAAGAGAGCCGTCCTTTGCTGCTGACGttcttcatcctcctcttgctcATCTTCTGCCTGGAGATTCTGTCTATCATGCTTTTCTTCATCTACCAAGACGAGATCGATCACTACGCCCAGAGGGATCTGAAGAAGGGCCTCCAGCTCTTTGGCACAGAGGGAAACGTGGGTCTGACCAACGCCTGGATGATAGTACAAACTGATTTTCGCTGCTGTGGAGTAACCAACCACACAGACTGGTTCGAGGTTTACAATGCCACCCGTGTGCCAGACTCCTGCTGCCTGGAGTACAGCGACAACTGTGGCCTGGACAACCCAGGAACATGGTGGACAGCGCCGTGCTACGAGCGTGTAAAGGACTGGCTTAATGAGAACCTGGTGGCCCTTTGGATCTTTGCTCTATGCACAGCACTTACTCAGaTCCTGGGCCTGGTTTTCTCCATGACGATGTTCTGTCAGGCAGTGAAAGTAGAGACCTTTTACGCCTAGCCATCGTTCTCTCTGCCCTTCAGCACATTTGGATTGTTTCTCATCAGAGAGGGACGAATATAGACCcacccaccctcctcctcctcctcctcctcctcctcctcctcttcccgaCAGACTCTTCTTTCCTTGTCCTCTCTGTGACATTCCCTCTCAGATGTCACCAGTTCACAGTTTTTCTGCTAACTATCAACAAGCACAGTGTCAGTGTATTATCTGAGTTGAGTTGGTTCCTATGGTTTGCTCTGTGTCAAAATGCTAATTTCTGTGATACATTTTATGAAGCAGTATTATgaacatgtataaaaaaaaaaaaatgtaaccccTTTTTTTAATATGTGTTTTGTTCTAAATTATTTTATGGCTTGtatgtgttttaaaaatgagAGCTACAGTTGGGGACTATGTGAAGTGCTGCAAGTGCATGTCTCCTGCAATGATgtgtaataaatgtttttggctCGACTAAA

Function

symbol description
tspan4 Enables antigen binding activity and integrin binding activity. Involved in protein-containing complex assembly. Located in plasma membrane and vesicle.

NR:

description
PREDICTED: tetraspanin-4-like isoform X1

GO: NA

KEGG:

id description
K17294 TSPAN4; tetraspanin-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795897.1 True 2080 mRNA 0.49 7 15181720 15320043
XM_039795898.1 False 1226 mRNA 0.48 8 15181720 15355315
XM_039795900.1 False 1346 mRNA 0.49 8 15181720 15356059
XM_039795901.1 False 1339 mRNA 0.49 8 15181720 15356059

Neighbor

gene id symbol gene type direction distance location
LOC120556194 cd151,LOC104922780,LOC103368535 coding downstream 137838 15017564 ~ 15043882 (-)
LOC120556084 NA coding downstream 300581 14878022 ~ 14881139 (-)
nr1h3 nr1h3,LOC102777562 coding downstream 353325 14811445 ~ 14828395 (-)
madd madd coding downstream 376953 14740192 ~ 14804767 (-)
muc15 NA coding downstream 527536 14638986 ~ 14654184 (-)
LOC120555953 LOC104955210,LOC103368874,LOC100700844,LOC104922787,LOC101483392 coding upstream 62893 15418952 ~ 15427599 (-)
LOC120556362 slc25a44,LOC104955209 coding upstream 77363 15433422 ~ 15437488 (-)
LOC120556400 rps17,LOC100699764,LOC107389132 coding upstream 168285 15524344 ~ 15532010 (-)
csnk1g1 csnk1g1,LOC103370372 coding upstream 180915 15536974 ~ 15578092 (-)
LOC120555812 snx1,LOC102784823 coding upstream 223981 15580040 ~ 15591856 (-)
G27497 NA non-coding downstream 700 15180739 ~ 15181020 (-)
G27493 ddb1,LOC102208280,LOC106561926 non-coding downstream 27605 15149500 ~ 15154115 (-)
G27450 NA non-coding downstream 164232 15016590 ~ 15017488 (-)
G27441 NA non-coding downstream 227829 14953538 ~ 14953891 (-)
G27440 NA non-coding downstream 228376 14952685 ~ 14953344 (-)
G27499 taldo1 non-coding upstream 5975 15362034 ~ 15374091 (-)
G27545 psa4,psma4,LOC106562664 non-coding upstream 88267 15444326 ~ 15446509 (-)
G27551 rbpms2,LOC107381790,LOC104957780 non-coding upstream 119194 15475253 ~ 15482686 (-)
G27552 NA non-coding upstream 123247 15479306 ~ 15505668 (-)
G27554 NA non-coding upstream 127051 15483110 ~ 15486465 (-)
cfap70 LOC103368539,LOC102222702,LOC102790175,LOC102296598,LOC102204478,LOC104922799 other downstream 102890 15050662 ~ 15078830 (-)
G27420 NA other downstream 337815 14842713 ~ 14843905 (-)
LOC120556476 NA other downstream 601709 14578027 ~ 14580011 (-)
G27321 NA other downstream 711375 14469758 ~ 14470345 (-)
G27075 LOC104939823,LOC100707594 other downstream 2085954 13069996 ~ 13095766 (-)
LOC120556162 znf609 other upstream 715510 16071569 ~ 16159882 (-)
LOC120555730 adamts7 other upstream 965904 16321963 ~ 16408868 (-)
LOC120556401 LOC104927750,LOC104949847,LOC103353195 other upstream 1837454 17193513 ~ 17284509 (-)
G27925 LOC103353204,LOC106512954,LOC102223374,LOC104951141 other upstream 2152064 17508123 ~ 17513168 (-)
c3h15orf48 clg1h15orf48,csgr07h15orf48,LOC103353210,LOC107085327,LOC104951152 other upstream 2243691 17599750 ~ 17601390 (-)

Expression


Co-expression Network