nudt21 (nudt21)


Basic Information

Item Value
gene id nudt21
gene name nudt21
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 27467865 ~ 27472009 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795902.1
ACTTCATCACCAGGAAGAGGAGGGCCGAGGGAAACGACGGTAGAGAAATTGTTGTGGATTGTCCACACAAGTGTTGAGAGTTTCTTTTGATATTCAGATAATCCAGCGAGTTACGAACCAACTACCACCAGAGGTACATTTATAGGAGGATTTAGCCTCGTCGTGCAAACGTTAGAGATGTCGGTCGTGCCTCCCAATCGCTCGACCACCGGATGGCCGCGCCGTGGTTCCGTTCAGTTTGAGAACAAATACATGAGCGGGCCTGCTAAACCGCTCACACTGGAGAGGACCATCAACCTGTACCCTCTAACCAACTACACATTCGGCACCAAGGAGCCTCTGTATGAGAAGGACAGTTCAGTGGCTGCCCGGTTCCAGCGGATGCGGGAAGAGTTTGATAAAATGGGAATGCGGAGGACAGTGGAGGGTGTTCTCATTGTCCATGAACACAGGCTGCCTCATGTGTTACTGCTGCAGTTGGGCACCACTTTCTTCAAACTGCCCGGGGGAGAGTTGAGTCCTGGAGAAGATGAGGTGGAGGGTCTGAAACGTCTAATGACTGAGATCCTCGGACGGCAAGACGGCGTGAAACAGGACTGGGTGATTGACGACTGTATCGGCAACTGGTGGCGCCCCAACTTTGAGCCTCCACAGTATCCGTATATTCCAGCCCACATCACCAAACCTAAGGAGCACAAGAAGCTATTCTTGGTTCAGTTGCAGGAAAAAGCGCTGTTTGCTGTCCCCAAGAACTATAAACTGGTGGCAGCACCATTGTTTGAACTGTATGACAACGCTCCTGGATATGGACCAATCATTTCCAGTCTACCACAGCTATTGAGCAGGTATTGTTTATGTCATTGTGTAAGCAGCGGAAATTGAACTGAAAcacctgtttttttgtttttttttctgttgactGTCACTGGCTAAATTAAAAATTGAAGGGCTGGAATCAAATATCATTACATGAATTGTCTGTAACAAGGATCTGTTATGTTCAATTGCTGACAAAACCTGTATCTGTAACTTTTCTAATTGTAACATAATAAACATTTTATCAACACCCGTTAACACAGTGAAAGCACAATGAATATAGAGACTACTTAAGAGCGTTTTCAGATAGTGTCCATCCTTCTGAGGTGTCTGAGGACAACACTGAAGACTGCACCACAGCTTATTTATACCAACCAAGAGGCAAAAGGAGACGTATACCTGTACACACAGTATTTGCAGATAAAGATTTGTCACTTTTATTCAAGTTGCTCAGCCCTCTGATGCACCAGTCACACATTCAGGTGTgcagggattttttttattttgtatttgactTTAAATTTGCTCAAAAGGGTTTACTGTATTACAAAGAGATTAATCAATATTGCAAGTGATGGTGCTTAAGTAACTCCTCAGAGCAGGAAATGACACCAGCAAAACTCCTGCATGAACTCTaaaacttaaaggtgccctgtggagttttcttgtatGTTTACATTAAGTGGTACTCTCCAAACTCATTGTGTATCCTTGAGATCAAACAAATGTGGTGAATGCATAGCCTTTGTcattaaacatttgcaaagcaga
>XM_039795903.1
CACTTCATCACCAGGAAGAGGAGGGCCGAGGGAAACGACGGTAGAGAAATTGTTGTGGATTGTCCACACAAGTGTTGAGAGTTTCTTTTGATATTCAGATAATCCAGCGAGTTACGAACCAACTACCACCAGAGGTACATTTATAGGAGGATTTAGCCTCGTCGTGCAAACGTTAGAGATGTCGGTCGTGCCTCCCAATCGCTCGACCACCGGATGGCCGCGCCGTGGTTCCGTTCAGTTTGAGAACAAATACATGAGCGGGCCTGCTAAACCGCTCACACTGGAGAGGACCATCAACCTGTACCCTCTAACCAACTACACATTCGGCACCAAGGAGCCTCTGTATGAGAAGGACAGTTCAGTGGCTGCCCGGTTCCAGCGGATGCGGGAAGAGTTTGATAAAATGGGAATGCGGAGGACAGTGGAGGGTGTTCTCATTGTCCATGAACACAGGCTGCCTCATGTGTTACTGCTGCAGTTGGGCACCACTTTCTTCAAACTGCCCGGGGGAGAGTTGAGTCCTGGAGAAGATGAGGTGGAGGGTCTGAAACGTCTAATGACTGAGATCCTCGGACGGCAAGACGGCGTGAAACAGGACTGGGTGATTGACGACTGTATCGGCAACTGGTGGCGCCCCAACTTTGAGCCTCCACAGTATCCGTATATTCCAGCCCACATCACCAAACCTAAGGAGCACAAGAAGCTATTCTTGGTTCAGTTGCAGGAAAAAGCGCTGTTTGCTGTCCCCAAGAACTATAAACTGGTGGCAGCACCATTGTTTGAACTGTATGACAACGCTCCTGGATATGGACCAATCATTTCCAGTCTACCACAGCTATTGAGCAGGTTCAACTTCATTTACAACTAACTTGAGTGAACAGAAGTACGTCTCGCTGTCTCTGTGAGTGCAGTCCTGTGTGAGTGAAGATGAGAGAcaatgtggagaaaaaaaatacttctcATCTTTTTAGCTCAACTTTCACAAAGGAAAAGCTTGTCATGTCAGGTATATTGACAGTTCACAAGGGTGTTTATACTGttagaagaagaaaatgaaaatgtcatgcgtctgtttttttgtttttttttatcttgagaAACTGCTAGTTTGTGTAGTACTCAAGTCTGTCTATTCCAGTGTGGTTATAATCTGATTTTATGTCCTCTGAGGAGGCTAATGttggattaaacaaactgtcATTGAGTTTTCCTGTTTTAACCTGTAACAATGCTGtgctcattttttctttttaataaaacagtCTTTTGAGTATGTTTTTATACAATTTGAA

Function

symbol description
nudt21 Predicted to enable identical protein binding activity and mRNA 3'-UTR AU-rich region binding activity. Predicted to be involved in several processes, including positive regulation of cell differentiation; protein-containing complex assembly; and regulation of mRNA metabolic process. Predicted to act upstream of or within cell differentiation and mRNA polyadenylation. Predicted to be located in cytoplasm and paraspeckles. Predicted to be part of mRNA cleavage factor complex. Orthologous to human NUDT21 (nudix hydrolase 21).

NR:

description
PREDICTED: cleavage and polyadenylation specificity factor subunit 5

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0005849 mRNA cleavage factor complex cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
K14397 NUDT21, CPSF5, CFIM25; cleavage and polyadenylation specificity factor subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795902.1 True 1587 mRNA 0.44 6 27467866 27471318
XM_039795903.1 False 1292 mRNA 0.45 7 27467865 27472009

Neighbor

gene id symbol gene type direction distance location
rab27a rab27a coding upstream 42163 27410828 ~ 27425702 (+)
ccpg1 NA coding upstream 64551 27391122 ~ 27403314 (+)
prtga prtg,LOC102785529 coding upstream 78498 27356268 ~ 27389367 (+)
mns1 mns1,LOC102786898 coding upstream 180309 27281412 ~ 27287556 (+)
znf280d znf280d coding upstream 188464 27261555 ~ 27279401 (+)
tradd tradd coding downstream 18004 27490013 ~ 27499955 (+)
gnao1b gnao1,LOC103374184,LOC101483250 coding downstream 29157 27501166 ~ 27509230 (+)
thap11 thap11 coding downstream 76445 27548454 ~ 27552229 (+)
nrn1lb nrn1l,LOC101167108,LOC107381583,LOC103366277 coding downstream 83184 27555193 ~ 27560381 (+)
slc38a8b LOC104927248,LOC103366290 coding downstream 91395 27563404 ~ 27570646 (+)
G30287 ctcf,LOC103374180,LOC104965832,LOC102192328 non-coding upstream 11894 27451338 ~ 27455971 (+)
G30280 NA non-coding upstream 168298 27298829 ~ 27299567 (+)
G30235 cgnl1 non-coding upstream 335957 27130176 ~ 27131908 (+)
G30148 aqp9 non-coding upstream 438311 27016958 ~ 27029554 (+)
G30124 NA non-coding upstream 575300 26891684 ~ 26892565 (+)
G30364 NA non-coding downstream 14795 27486804 ~ 27487597 (+)
G30423 NA non-coding downstream 164850 27636859 ~ 27637082 (+)
G30428 NA non-coding downstream 191191 27663200 ~ 27663466 (+)
G30461 NA non-coding downstream 339119 27811128 ~ 27811547 (+)
G30518 NA non-coding downstream 425668 27897677 ~ 27898381 (+)
G30295 NA other upstream 844 27465778 ~ 27467021 (+)
LOC120555924 LOC103398348,LOC104965831,LOC103374185 other upstream 3106 27456416 ~ 27464759 (+)
vrk3 NA other upstream 27451 27426288 ~ 27440414 (+)
LOC120555577 NA other upstream 57615 27409040 ~ 27410250 (+)
nedd4a nedd4,LOC103371920,LOC102785817 other upstream 116028 27318370 ~ 27351837 (+)
ogfod1 ogfod1,LOC102779874 other downstream 1656 27473665 ~ 27486769 (+)
G30366 NA other downstream 15668 27487677 ~ 27488791 (+)
LOC120555373 LOC102214634,LOC101478275,LOC102310185,LOC103366289 other downstream 328459 27800468 ~ 27807464 (+)
LOC120555397 LOC100695720,LOC100703698,LOC102797576,LOC101469320,LOC102211850,LOC101061652 other downstream 488911 27960920 ~ 27963055 (+)
mvda mvd other downstream 497889 27969898 ~ 27975301 (+)

Expression


Co-expression Network