obi1


Basic Information

Item Value
gene id obi1
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19606123 ~ 19613725 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795915.1
CCTTTTTGGCTTTCCGTAGATCTGAGACTCGGCGCGCTGCGCAGCGGGGACTGGTGggaaagtttgtgtgtgtgtttgtgcgctgTGTATTCCTTCAAAAAGCATGGCTCTTAACTTTCAGACATCCACCCTTCATCTGACTTTGCCGATTTCATGCCAGATATGTCTCGgaaagGTCAGGCAGCCGGTCATTTGTGCCAACCACCACGTGTTCTGCTCCTCATGCATGGAAATGTGGTTAAAGAAAGCTAGCCAATGTCCCACCTGCAGAGTCCCCATCACAGCAGAGAACCCCTGCAGGGAAATCATCGGAGGCACAAATGATCACAATGATAGTCCTTCCATGAGGAAATGTCTCAGAAAAACCAGAGGGGAACTGCTTTTGCGGGAGTATGAGGAGGAATTCGAAGGGCTCATCAGAGAAAACGAGGAgctgaaaacaaaaaatcaaAGTCTGGAGTCACAACTGAAGACTGCTTTGGATCCCTGCAGTATTAATACACTGCTAACAGATGACAAAAAAGTTGACTCCTTTGTCCTGGAAGAATGGACCAACAAGCTGCGCGCTGCCACTGATGTTTGTGATAAAGTAAAGCAAGACATGGATAAGCTAAAGGAGGCAAATAAGGCATTACGATCTCAAAATGTTGACCTTGTACAAGAGAATATGAGATTGAAAGCAGAGGTGGCGAGCAGATCTCCTCAGAAGTTTGGTCGTTATACAGTGGCAGCACTGGAAGCTAAAATCCAGCAGCACGAGCGTGATGTGGACCACTTAAAAAGGGCTCTGGAGCGCAGCGACCAGTACATCGAAGACCTGGAGTCTCGAGTCAGGAAGTCCGAGAAGCGACGTCTTGAAGGGCAGGAAGCATGCTGGAATAGCGAGGCCGAGGCAGAAGCTCCCACACAGCCGCACAAAATCAACATGATGATGAGAAGCTTGAGTGACAATGAGAGGGAGTCAATCTGCAGCAATCCAGTGGCAAAGGGTCGAACATTTTCTAGACATCACAGTTTGATATTCATGCCGTCTGCAGATCACAAAGAGTCTAAGAAGAATCTGACGGGTGACCAGAAAACCAAGGACTTGGAAAGCACCTCCTCTGACCTTTTGCCCACCACACCGTCCTCTGCCTTCCGGTCCCTGACTCTGAGAAGCCCTGGCGTCCGTGAAAAGAAAGTTGCATTTAAACCTGCGTCTTATCTGAGGAGGCTTGATTTTGAAGACTTTCCCAGTCCTGGCGAAAGTAGCAGCACCATGGAGAACCAATTCAGCAGCCTCGACGAATTCCCCAACGACTTGCCTCCAGTTGCTGACGTGGAACCCTCAAAGTCTGTCTTCTGGGGTGGTTGGCAGAGATCTAAATCTAGTGACGAGTCATGTCCAGGTCCAAGTAAAGAAATCTCAgtgaaagaagaagaggacgaCGTAGATGATGACGAGCCTGGTGGCTTGCAGATTTCCAGCGAGGCCTCCATGGATGCCGCTTACATGGACAAAATCTCTGAGTTGGACTCCATGATGTTGGACGGAGAGAGCACCAGTAGCCGGGGATCACAGCTCTCCCTGGCTTCCTCCCCTCCCGCAGACTTGGACAACACTCTCGTCCCAGAACCACGAACCTGCCGGGATGGCCCGTCAAGCCGTGGTTGCAAACCTGTTATACAGTGTGACCAGAAGAACCACCCACCACGTGTCAACGTGGGTGGCCCCTTGAATGAGAAAGAGGCGCCAAACGGCTCTGCAGAGGAATGTTTTGCTGCACTGGTGTCAGATAGGGAGAACGATGCCAATGTCCCTGACTGTGCAGGGCACGAAGGGCCCTCTCAGACTGATGAACTGTCTTTTGACTTGCTGTTTGATTCACTGGAAGAGAATAAGGCCGGTCCTTCTGGCTCTCTCAGTCCAGCAAGCCAAGACCATGATCGTGTAAAcctttcctcctcccccatCTGCACCGGTAAACCTGTGAACACaacaagagacagacacacactgaacatCAGCCAGCCGACAAAGAGGAAGTCTCACAGTCCCTTTAACACAAGCAGTCCCACAAAACTTTCAAAGCTCATGTGAAGGTTGTCAAAAcggaacctgtgtgtgtgtgtgtgtcactgtacCGTGCACTGTAGTGCGTTTTGTTCAGGTTTCGCAACCAAAACATTAACTCAATATTGCTTCAGAAAAAAATTGTGAGTGTGATGCTCCGGTGTAAGTTATTGTCATTTTGTCTGTTATATTGTATGAATTGAAGACAAAATATGACAGCTTTGTCAGATAGCTTTTTTGTGTGTAGTATACTTGTAGGTCTCAGTGGCAGTTAAATGCTTTTAAAGCCAGCCTTTACAGTCTGAAATTCTGTCTGTGTTGTAATCTGACAAACGCTTCTGTGCTGTTCTTTGTCATACTGTAGTGCACCAGTTTTGGTGCAAAGACATTTTCATACTTTCAGCCTACTTGTATGTGTTTGTCATTTCAAGTTATTCAGTAAACGTGGTCCTCGTGGTAATCTTTTTATGATGACATGCAATACTGAAGACAGATGAACACAACTGTCATGAAAAACTGAtattttgaaatacattttgcaATGCAAGAGtgttaagaaaataaaatagttaTGCAAGGAGAAACAA

Function

NR:

description
RING finger protein 219 isoform X1

GO: NA

KEGG:

id description
K24091 OBI1; ORC ubiquitin ligase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795915.1 True 2640 mRNA 0.47 6 19606123 19613725

Neighbor

gene id symbol gene type direction distance location
rbm26 rbm26 coding upstream 44398 19549354 ~ 19561725 (+)
LOC120556547 LOC103359454,LOC102294290,LOC100700192 coding upstream 60467 19535697 ~ 19545656 (+)
LOC120556555 LOC103359454,LOC102294290 coding upstream 72310 19528085 ~ 19533813 (+)
wdsub1 wdsub1 coding upstream 147124 19446170 ~ 19458999 (+)
baz2ba baz2b coding upstream 161454 19373981 ~ 19444669 (+)
pou4f1 pou4f1,LOC103143517,LOC106914826 coding downstream 1120 19614845 ~ 19617452 (+)
LOC120555422 pcdh20 coding downstream 828674 20442399 ~ 20446773 (+)
LOC120555780 diaph3 coding downstream 890373 20504098 ~ 20692974 (+)
LOC120556481 NA coding downstream 1673118 21286843 ~ 21287974 (+)
nkpd1 LOC104962748 coding downstream 1717428 21331153 ~ 21352064 (+)
G28590 NA non-coding upstream 94381 19511014 ~ 19511742 (+)
LOC120555526 NA non-coding upstream 105900 19496214 ~ 19500223 (+)
LOC120556586 NA non-coding upstream 107899 19498093 ~ 19498224 (+)
LOC120556587 NA non-coding upstream 108250 19497738 ~ 19497873 (+)
G28580 LOC103359460 non-coding upstream 119598 19486270 ~ 19486525 (+)
LOC120555794 NA non-coding downstream 357494 19971219 ~ 19972240 (+)
G28696 NA non-coding downstream 500262 20113987 ~ 20114360 (+)
G28721 LOC103376870 non-coding downstream 742347 20356072 ~ 20356354 (+)
G28745 NA non-coding downstream 965417 20579142 ~ 20580115 (+)
G28776 NA non-coding downstream 1163818 20777543 ~ 20777816 (+)
ercc3 ercc3 other upstream 85905 19512356 ~ 19520218 (+)
G28581 NA other upstream 118590 19487246 ~ 19487533 (+)
LOC120555697 NA other upstream 519059 19074308 ~ 19087064 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 1030181 18561873 ~ 18575942 (+)
LOC120555788 NA other upstream 1862675 17724545 ~ 17743448 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 158394 19772119 ~ 19993954 (+)
G28770 NA other downstream 1097379 20711104 ~ 20761147 (+)
G28826 NA other downstream 1782488 21396213 ~ 21403450 (+)
grk1a grk1 other downstream 1807385 21421110 ~ 21433147 (+)
tpp2 tpp2 other downstream 1911867 21525592 ~ 21562814 (+)

Expression


Co-expression Network