LOC120556362 (slc25a44,LOC104955209)


Basic Information

Item Value
gene id LOC120556362
gene name slc25a44,LOC104955209
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15433422 ~ 15437488 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795916.1
tgcttgCCGGTCAGTGGTTGTTTCGGCTACATGCCGTTTGAATGGGAATGGTAAGCAAGTTAGCTGACTCGCTAGGAGGTAGCTAAGTATTTACGTCGCTATAATATATTTAGCTAAACAACTGAATGACGATACGCGGAATTGCAAATTTTTTTGACCGATGACATGCTATTTAAAGTCTAACCGACATTGCCATGACCTTATAATACACATCTGTCTAAAGAGGAATCAGTCTGATGAGGGGTCACCTAAAGCTGGCAGGATGCAGCAGAAAAGGAACATCCAGATCATCGAGTGGGAGGACCTTGACAAAAGGAAGTTCTACTCTTTCGGGGTGTTCATGACGATGACCATCCGGGCCACGGTCTACCCGGCCACACTCATTCGCACTCGGCTGCAGGTGCAGAGGGGCAAATCGCTCTACAGCGGCACCTTTGACGCCTTCTTCAAGATTCTGCGGACGGAGGGCGTTCGAGGCCTTTATCGCGGCTTTATGGTCAACACCCTCACACTCATCTCAGGCCAGGCTTACATAACCACCTACGAGCTGGTGAGGAAGTATGTCTCCCAGTATTCTGAGGACAATACGGTCAAGTCACTGGTGGCGGGCGGCATGGCCTCCCTGGTTGCTCAGAGCATCACTGTTCCTATAGATGTTATCTCTCAGCAGCTAATGATGCAGGGCCAAGGGGAGCACCTCACCCGCTTTAGACTCAATTCGAACACAGAGACTGGAAAGCCCAAAAAAGTGTTCGGCCAAACCAGAAACATTATGGGTCAGATTTTTGCTGCTGATGGTTTCCGGGGCTTCTACAGGGGATATGTGGCTTCTTTACTCACATATATCCCAAACAGTGCTGTCTGGTGgcctttttatcatttttatgcTGAGCAACTTTCTCAACTGGCACCCAGTGACTGCCCTCATCTGATTCTACAAGCCATGGCTGGACCTCTAGCTGCCGCTACTGCCTCAACTGTCACCAACCCAATGGATGTGGTCCGAGCCAGAGTGCAGGTTGAAGGGAGGTCTTCAGTCATCGAGACGTTCAGGCAGCTCATCAAAGAGGAGGGCGGCTGGGGATTGACCAAAGGACTGTCGGCACGCATCATCTCATCCACGCCCACTGCCCTCGTCATGGTGGTCGGCTACGAGACGCTAAAAAAACTGAGTTTGCGACCGGAGCTGGTGGACTCGAGACACTGGTAGAAGATACCCGGACAGACAATATACGGACCAcgtgccatttttttttttcctacgttCGATATTCTGTGAAAACACTGGATGAAAGAaaagtttgttttaaataacaACGTGggaaacttgaaaaaaaattcaatcAAGCCACTTCAAACACGCATTACCATGTGTATAAGACAATGACCATGTGTCCATGCCAACATATTAGTTGcagattaaaggtgctctaagcgatgttgggcgACGGCCCTTCTccgttgacgttcaaagtattttcaaacaaaacggaggctagctcgcccctccctc
>XM_039795918.1
AATGACCTTTGAACTCTCAGGTACAGAGATCAAGTATCGGCAAAGGCGGATCAGGGATGGATAAAAATGACAGGCAGGAATCAGTCTGATGAGGGGTCACCTAAAGCTGGCAGGATGCAGCAGAAAAGGAACATCCAGATCATCGAGTGGGAGGACCTTGACAAAAGGAAGTTCTACTCTTTCGGGGTGTTCATGACGATGACCATCCGGGCCACGGTCTACCCGGCCACACTCATTCGCACTCGGCTGCAGGTGCAGAGGGGCAAATCGCTCTACAGCGGCACCTTTGACGCCTTCTTCAAGATTCTGCGGACGGAGGGCGTTCGAGGCCTTTATCGCGGCTTTATGGTCAACACCCTCACACTCATCTCAGGCCAGGCTTACATAACCACCTACGAGCTGGTGAGGAAGTATGTCTCCCAGTATTCTGAGGACAATACGGTCAAGTCACTGGTGGCGGGCGGCATGGCCTCCCTGGTTGCTCAGAGCATCACTGTTCCTATAGATGTTATCTCTCAGCAGCTAATGATGCAGGGCCAAGGGGAGCACCTCACCCGCTTTAGACTCAATTCGAACACAGAGACTGGAAAGCCCAAAAAAGTGTTCGGCCAAACCAGAAACATTATGGGTCAGATTTTTGCTGCTGATGGTTTCCGGGGCTTCTACAGGGGATATGTGGCTTCTTTACTCACATATATCCCAAACAGTGCTGTCTGGTGgcctttttatcatttttatgcTGAGCAACTTTCTCAACTGGCACCCAGTGACTGCCCTCATCTGATTCTACAAGCCATGGCTGGACCTCTAGCTGCCGCTACTGCCTCAACTGTCACCAACCCAATGGATGTGGTCCGAGCCAGAGTGCAGGTTGAAGGGAGGTCTTCAGTCATCGAGACGTTCAGGCAGCTCATCAAAGAGGAGGGCGGCTGGGGATTGACCAAAGGACTGTCGGCACGCATCATCTCATCCACGCCCACTGCCCTCGTCATGGTGGTCGGCTACGAGACGCTAAAAAAACTGAGTTTGCGACCGGAGCTGGTGGACTCGAGACACTGGTAGAAGATACCCGGACAGACAATATACGGACCAcgtgccatttttttttttcctacgttCGATATTCTGTGAAAACACTGGATGAAAGAaaagtttgttttaaataacaACGTGggaaacttgaaaaaaaattcaatcAAGCCACTTCAAACACGCATTACCATGTGTATAAGACAATGACCATGTGTCCATGCCAACATATTAGTTGcagattaaaggtgctctaagcgatgttgggcgACGGCCCTTCTccgttgacgttcaaagtattttcaaacaaaacggaggctagctcgcccctccctc
>XM_039795919.1
tgcttgCCGGTCAGTGGTTGTTTCGGCTACATGCCGTTTGAATGGGAATGGTAAGCAAGTTAGCTGACTCGCTAGGAGGTAGCTAAGTATTTACGTCGCTATAATATATTTAGCTAAACAACTGAATGACGATACGCGGAATTGCAAATTTTTTTGACCGATGACATGCTATTTAAAGTCTAACCGACATTGCCATGACCTTATAATACACATCTGTCTAAAGAGGCAGGAATCAGTCTGATGAGGGGTCACCTAAAGCTGGCAGGATGCAGCAGAAAAGGAACATCCAGATCATCGAGTGGGAGGACCTTGACAAAAGGAAGTTCTACTCTTTCGGGGTGTTCATGACGATGACCATCCGGGCCACGGTCTACCCGGCCACACTCATTCGCACTCGGCTGCAGGTGCAGAGGGGCAAATCGCTCTACAGCGGCACCTTTGACGCCTTCTTCAAGATTCTGCGGACGGAGGGCGTTCGAGGCCTTTATCGCGGCTTTATGGTCAACACCCTCACACTCATCTCAGGCCAGGCTTACATAACCACCTACGAGCTGGTGAGGAAGTATGTCTCCCAGTATTCTGAGGACAATACGGTCAAGTCACTGGTGGCGGGCGGCATGGCCTCCCTGGTTGCTCAGAGCATCACTGTTCCTATAGATGTTATCTCTCAGCAGCTAATGATGCAGGGCCAAGGGGAGCACCTCACCCGCTTTAGACTCAATTCGAACACAGAGACTGGAAAGCCCAAAAAAGTGTTCGGCCAAACCAGAAACATTATGGGTCAGATTTTTGCTGCTGATGGTTTCCGGGGCTTCTACAGGGGATATGTGGCTTCTTTACTCACATATATCCCAAACAGTGCTGTCTGGTGgcctttttatcatttttatgcTGAGCAACTTTCTCAACTGGCACCCAGTGACTGCCCTCATCTGATTCTACAAGCCATGGCTGGACCTCTAGCTGCCGCTACTGCCTCAACTGTCACCAACCCAATGGATGTGGTCCGAGCCAGAGTGCAGGTTGAAGGGAGGTCTTCAGTCATCGAGACGTTCAGGCAGCTCATCAAAGAGGAGGGCGGCTGGGGATTGACCAAAGGACTGTCGGCACGCATCATCTCATCCACGCCCACTGCCCTCGTCATGGTGGTCGGCTACGAGACGCTAAAAAAACTGAGTTTGCGACCGGAGCTGGTGGACTCGAGACACTGGTAGAAGATACCCGGACAGACAATATACGGACCAcgtgccatttttttttttcctacgttCGATATTCTGTGAAAACACTGGATGAAAGAaaagtttgttttaaataacaACGTGggaaacttgaaaaaaaattcaatcAAGCCACTTCAAACACGCATTACCATGTGTATAAGACAATGACCATGTGTCCATGCCAACATATTAGTTGcagattaaaggtgctctaagcgatgttgggcgACGGCCCTTCTccgttgacgttcaaagtattttcaaacaaaacggaggctagctcgcccctccct

Function

symbol description
slc25a44 Predicted to enable branched-chain amino acid transmembrane transporter activity. Involved in branched-chain amino acid catabolic process. Predicted to be located in mitochondrion.

NR:

description
PREDICTED: solute carrier family 25 member 44

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15121 SLC25A44; solute carrier family 25, member 44

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795916.1 False 1513 mRNA 0.49 4 15433422 15437488
XM_039795918.1 False 1365 mRNA 0.50 4 15433422 15436793
XM_039795919.1 True 1516 mRNA 0.49 4 15433423 15437488

Neighbor

gene id symbol gene type direction distance location
LOC120555953 LOC104955210,LOC103368874,LOC100700844,LOC104922787,LOC101483392 coding downstream 5823 15418952 ~ 15427599 (-)
tspan4a tspan4,LOC102780031,LOC107381782 coding downstream 77363 15181720 ~ 15356059 (-)
LOC120556194 cd151,LOC104922780,LOC103368535 coding downstream 389540 15017564 ~ 15043882 (-)
LOC120556084 NA coding downstream 552283 14878022 ~ 14881139 (-)
nr1h3 nr1h3,LOC102777562 coding downstream 605027 14811445 ~ 14828395 (-)
LOC120556400 rps17,LOC100699764,LOC107389132 coding upstream 86856 15524344 ~ 15532010 (-)
csnk1g1 csnk1g1,LOC103370372 coding upstream 99486 15536974 ~ 15578092 (-)
LOC120555812 snx1,LOC102784823 coding upstream 142552 15580040 ~ 15591856 (-)
neo1a NA coding upstream 162487 15599975 ~ 15787368 (-)
LOC120556584 NA coding upstream 202281 15639769 ~ 15639960 (-)
G27499 taldo1 non-coding downstream 59331 15362034 ~ 15374091 (-)
G27497 NA non-coding downstream 252402 15180739 ~ 15181020 (-)
G27493 ddb1,LOC102208280,LOC106561926 non-coding downstream 279307 15149500 ~ 15154115 (-)
G27450 NA non-coding downstream 415934 15016590 ~ 15017488 (-)
G27441 NA non-coding downstream 479531 14953538 ~ 14953891 (-)
G27545 psa4,psma4,LOC106562664 non-coding upstream 6838 15444326 ~ 15446509 (-)
G27551 rbpms2,LOC107381790,LOC104957780 non-coding upstream 37765 15475253 ~ 15482686 (-)
G27552 NA non-coding upstream 41818 15479306 ~ 15505668 (-)
G27554 NA non-coding upstream 45622 15483110 ~ 15486465 (-)
G27582 NA non-coding upstream 96512 15534000 ~ 15535337 (-)
cfap70 LOC103368539,LOC102222702,LOC102790175,LOC102296598,LOC102204478,LOC104922799 other downstream 354592 15050662 ~ 15078830 (-)
G27420 NA other downstream 589517 14842713 ~ 14843905 (-)
LOC120556476 NA other downstream 853411 14578027 ~ 14580011 (-)
G27321 NA other downstream 963077 14469758 ~ 14470345 (-)
G27075 LOC104939823,LOC100707594 other downstream 2337656 13069996 ~ 13095766 (-)
LOC120556162 znf609 other upstream 634081 16071569 ~ 16159882 (-)
LOC120555730 adamts7 other upstream 884475 16321963 ~ 16408868 (-)
LOC120556401 LOC104927750,LOC104949847,LOC103353195 other upstream 1756025 17193513 ~ 17284509 (-)
G27925 LOC103353204,LOC106512954,LOC102223374,LOC104951141 other upstream 2070635 17508123 ~ 17513168 (-)
c3h15orf48 clg1h15orf48,csgr07h15orf48,LOC103353210,LOC107085327,LOC104951152 other upstream 2162262 17599750 ~ 17601390 (-)

Expression


Co-expression Network