LOC120556367 (LOC104932139,LOC100695351,LOC108237907,LOC102197162,LOC103129685,LOC106520888,LOC101465514,LOC103366349,LOC102224277)


Basic Information

Item Value
gene id LOC120556367
gene name LOC104932139,LOC100695351,LOC108237907,LOC102197162,LOC103129685,LOC106520888,LOC101465514,LOC103366349,LOC102224277
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 7005842 ~ 7023172 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795922.1
ATTGAGTAATTCGGCGCTGAAAAGGAAGGAGGCAGGATCCTACTTTTGTAGCGGTACAACCAACCAAAGCGTCAGTACTAGCTAGGGCAACAGCAGTATTAACTAAAACGGCGTCTACCTAGTTACTTTGCTTTCGAGCATCGTGACAAAGCGCAGAGTTTGGAACATGGCTGATAAAGAGGTGTATGACGATGCTGTGGAAGAAAGGGTCATCAATGAAGAGTACAAGATTTGGAAGAAAAACACACCTTTTCTGTATGACCTGGTGATGACTCATGCGCTGGAGTGGCCCAGCCTTACTGTCCAGTGGCTTCCAGATGTCAGCAGGCCCGAGGGGAAGGACTACGCAGTACACCGGCTGGTGTTAGGGACCCATACGTCCGATGAGCAGAACCACCTGGTGATTGCCAGCGTCCAGGTACCAAATGATGACGCCCAGTTTGACGCCTCGCACTACGACAGCGAGAAAGGAGCAGAGTTTGGCGGATTTGGCTCAGTAAGTGGGAAGATTGAGATCGAGATTAAAATCAACCACGAGGGAGAGGTCAACCGAGCCCGCTACATGCCCCAGAACCACTGCATTATCGCCACCAAGACCCCCACCTCTGACGTGCTGGTCTTCGACTACAATAAGCACCCGACTAAGCCAGaTCCCAGCGGGGAGTGCAGTCCTGACTTGCGCCTGAAAGGCCACCAAAAAGAAGGCTATGGCCTTTCCTGGAATCCCAACCTCAGCGGCAATTTGCTCAGCGCCTCCGACGACCATACCATCTGTCTATGGGACATCGGGGCAGGCCCAAAGGAAGGGAAGATTGTGGATGCCAAGACCATCTTCACCGGCCACACAGCGGTGGTGGAAGATGTTTCCTGGCATTTGCTCCACGAATCGCTGTTTGGCTCAGTGGCTGACGACCAGAAACTCATGATATGGGACACTCGGTCCAACACCACGTCCAAAGCCAGCCACGCAGTCGAAGCACACACTGCTGAGGTCAACTGTCTCAGCTTCAACCCCTACAGCGAGTTCATTCTCGCCACTGGTTCTGCTGATAAGACTGTTGCACTGTGGGATCTAAGGAACCTCAAACTGAAGCTCCACTCCTTTGAGTCCCACAAAGATGAAATTTTCCAGGTACAATGGTCTCCACACAACGAAACCATCCTGGCCTCCAGCGGCACCGACCGGCGTCTCAACGTCTGGGACCTCAGTAAAATCGGGGAGGAGCAGTCGGCAGAAGATGCTGAGGATGGCCCACCAGAGCTGCTGTTCATCCACGGCGGCCACACAGCCAAGATCTCTGACTTCTCCTGGAACCCCAATGAACCCTGGGTCATCTGCTCGGTGTCGGAGGACAACATCATGCAAGTCTGGCAGATGGCGGAGAACATCTACAACGACGAGGAGCCAGACAACACCCCTGCATCAGAGCTGGAGGCTCAGGGATCATAACCCAGCTCTGCGCCCGTCTCTCCAGGCACGACCCCACGACACCCCCACCGCACCAACctctaacccctaaccctgCCCTATTCCCTGAGCTCCCAGACCCCGCCCAGCCTGTCGTTTCCCTCTCTGGCTAATCGAGTGCACAAGGAAAGAGTCTGCTCCACGTGAACGAACCATGTGGAGGGTTCGAGACGGCACGGACTCCACCCTGGCTAACCGACGGCTGGATGATTCAGGCTCAGCTTGCTCCCACTTCACCACGGCCCCAAGTTCCCCAGAAGCCCTTGGAGTAGGATAGGAGTCGCTCAGGTGGTAATATCTCCAGTGTTTGGGGAATGGGATTGGGAGACTCTtaagagcagaaaaaaaaaaaaccttttttaggTGCAAAGTCAGCGTAAGCTATCATTAACACGAGTTACATCAGTTCATTTCCAAGGGCTTACGCAAGGAAAACAAACGTGTCATTTTACATTTGGACTAACTAGTAGCCAAGAAAACCACTAGCTAGTAGGCTTCCCCTCAAGACACAAATAAGTAAGGAAACCCGCGCGGTAAGAGACTGATCTGAGCActgaaatgcttttttttttttttttttttggaaaacctGATCTACACCTGTCCAAACTTTGATTGGCTAAGAGCTAACCGCGATGGTCATGTCCAGGGGCGCTTTATTCCTACTTTGGTTTCCCACCTGTCGAGCACTTGCGGCTGTTAATTTGTTACCTAATATCGCACTTAGCTGACACCTCCTGGCTGTCCTTTTTGAAGAAACATTCCCTGCTGCGTTTGCCTCCTGTTAAATACGCTAAGGTACAGAAACTCTTCAGTGTTTGGTTTAGTGAACGGTGTGGAACTAAATTAGTGCACTTGAGGGAAACGCACATCTTTTCCCTCTCCTCTGTTGTTACATAATTCGAAATTGCCTTGTTTTGTTTCCTGCACCACAAATTGCAATAAAACTTTTATAACTTTTCAAAA
>XM_039795923.1
ATTGAGTAATTCGGCGCTGAAAAGGAAGGAGGCAGGATCCTACTTTTGTAGCGGTACAACCAACCAAAGCGTCAGTACTAGCTAGGGCAACAGCAGTATTAACTAAAACGGCGTCTACCTAGTTACTTTGCTTTCGAGCATCGTGACAAAGCGCAGAGTTTGGAACATGGCTGATAAAGAGGTGTATGACGATGCTGTGGAAGAAAGGGTCATCAATGAAGAGTACAAGATTTGGAAGAAAAACACACCTTTTCTGTATGACCTGGTGATGACTCATGCGCTGGAGTGGCCCAGCCTTACTGTCCAGTGGCTTCCAGATGTCAGCAGGCCCGAGGGGAAGGACTACGCAGTACACCGGCTGGTGTTAGGGACCCATACGTCCGATGAGCAGAACCACCTGGTGATTGCCAGCGTCCAGGTACCAAATGATGACGCCCAGTTTGACGCCTCGCACTACGACAGCGAGAAAGGAGAGTTTGGCGGATTTGGCTCAGTAAGTGGGAAGATTGAGATCGAGATTAAAATCAACCACGAGGGAGAGGTCAACCGAGCCCGCTACATGCCCCAGAACCACTGCATTATCGCCACCAAGACCCCCACCTCTGACGTGCTGGTCTTCGACTACAATAAGCACCCGACTAAGCCAGaTCCCAGCGGGGAGTGCAGTCCTGACTTGCGCCTGAAAGGCCACCAAAAAGAAGGCTATGGCCTTTCCTGGAATCCCAACCTCAGCGGCAATTTGCTCAGCGCCTCCGACGACCATACCATCTGTCTATGGGACATCGGGGCAGGCCCAAAGGAAGGGAAGATTGTGGATGCCAAGACCATCTTCACCGGCCACACAGCGGTGGTGGAAGATGTTTCCTGGCATTTGCTCCACGAATCGCTGTTTGGCTCAGTGGCTGACGACCAGAAACTCATGATATGGGACACTCGGTCCAACACCACGTCCAAAGCCAGCCACGCAGTCGAAGCACACACTGCTGAGGTCAACTGTCTCAGCTTCAACCCCTACAGCGAGTTCATTCTCGCCACTGGTTCTGCTGATAAGACTGTTGCACTGTGGGATCTAAGGAACCTCAAACTGAAGCTCCACTCCTTTGAGTCCCACAAAGATGAAATTTTCCAGGTACAATGGTCTCCACACAACGAAACCATCCTGGCCTCCAGCGGCACCGACCGGCGTCTCAACGTCTGGGACCTCAGTAAAATCGGGGAGGAGCAGTCGGCAGAAGATGCTGAGGATGGCCCACCAGAGCTGCTGTTCATCCACGGCGGCCACACAGCCAAGATCTCTGACTTCTCCTGGAACCCCAATGAACCCTGGGTCATCTGCTCGGTGTCGGAGGACAACATCATGCAAGTCTGGCAGATGGCGGAGAACATCTACAACGACGAGGAGCCAGACAACACCCCTGCATCAGAGCTGGAGGCTCAGGGATCATAACCCAGCTCTGCGCCCGTCTCTCCAGGCACGACCCCACGACACCCCCACCGCACCAACctctaacccctaaccctgCCCTATTCCCTGAGCTCCCAGACCCCGCCCAGCCTGTCGTTTCCCTCTCTGGCTAATCGAGTGCACAAGGAAAGAGTCTGCTCCACGTGAACGAACCATGTGGAGGGTTCGAGACGGCACGGACTCCACCCTGGCTAACCGACGGCTGGATGATTCAGGCTCAGCTTGCTCCCACTTCACCACGGCCCCAAGTTCCCCAGAAGCCCTTGGAGTAGGATAGGAGTCGCTCAGGTGGTAATATCTCCAGTGTTTGGGGAATGGGATTGGGAGACTCTtaagagcagaaaaaaaaaaaaccttttttaggTGCAAAGTCAGCGTAAGCTATCATTAACACGAGTTACATCAGTTCATTTCCAAGGGCTTACGCAAGGAAAACAAACGTGTCATTTTACATTTGGACTAACTAGTAGCCAAGAAAACCACTAGCTAGTAGGCTTCCCCTCAAGACACAAATAAGTAAGGAAACCCGCGCGGTAAGAGACTGATCTGAGCActgaaatgcttttttttttttttttttttggaaaacctGATCTACACCTGTCCAAACTTTGATTGGCTAAGAGCTAACCGCGATGGTCATGTCCAGGGGCGCTTTATTCCTACTTTGGTTTCCCACCTGTCGAGCACTTGCGGCTGTTAATTTGTTACCTAATATCGCACTTAGCTGACACCTCCTGGCTGTCCTTTTTGAAGAAACATTCCCTGCTGCGTTTGCCTCCTGTTAAATACGCTAAGGTACAGAAACTCTTCAGTGTTTGGTTTAGTGAACGGTGTGGAACTAAATTAGTGCACTTGAGGGAAACGCACATCTTTTCCCTCTCCTCTGTTGTTACATAATTCGAAATTGCCTTGTTTTGTTTCCTGCACCACAAATTGCAATAAAACTTTTATAACTTTTCAAAA

Function

NR:

description
PREDICTED: histone-binding protein RBBP7

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K10752 RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795922.1 True 2434 mRNA 0.51 12 7005842 7023172
XM_039795923.1 False 2431 mRNA 0.51 12 7005842 7023172

Neighbor

gene id symbol gene type direction distance location
LOC120556364 NA coding downstream 23481 6970278 ~ 6982361 (-)
ccdc102a ccdc102a coding downstream 104493 6847479 ~ 6901349 (-)
nadsyn1 nadsyn1 coding downstream 375554 6598675 ~ 6630288 (-)
LOC120555473 NA coding downstream 497148 6506363 ~ 6508694 (-)
pcsk6 pcsk6,LOC108237842 coding downstream 523832 6454631 ~ 6482010 (-)
hdgfl3 LOC103366351,LOC102309090,LOC101465811,LOC100694012,LOC106907470 coding upstream 5394 7028566 ~ 7042141 (-)
LOC120555919 NA coding upstream 22681 7045853 ~ 7052477 (-)
LOC120555843 LOC104937892 coding upstream 280912 7304084 ~ 7306330 (-)
arnt2 arnt2 coding upstream 2130070 9153242 ~ 9229577 (-)
fah fah coding upstream 2285425 9308597 ~ 9325288 (-)
G25910 NA non-coding downstream 189 7001163 ~ 7005653 (-)
LOC120556213 NA non-coding downstream 42120 6901354 ~ 6963722 (-)
G25907 NA non-coding downstream 83841 6910250 ~ 6922001 (-)
G25877 NA non-coding downstream 159786 6845813 ~ 6846056 (-)
G25875 NA non-coding downstream 217215 6788342 ~ 6788627 (-)
G25920 NA non-coding upstream 31224 7054396 ~ 7054600 (-)
G25922 NA non-coding upstream 55035 7078207 ~ 7078433 (-)
G25924 NA non-coding upstream 112737 7135909 ~ 7136226 (-)
G25934 NA non-coding upstream 202112 7225284 ~ 7294154 (-)
G25933 NA non-coding upstream 258682 7281854 ~ 7284782 (-)
dok4 dok4,LOC102198948,LOC100694825,LOC102775855 other downstream 312511 6642164 ~ 6693331 (-)
tpcn2 tpcn2 other downstream 415203 6534042 ~ 6590639 (-)
pop4 pop4,LOC105418436,LOC104960843 other downstream 481487 6509259 ~ 6524355 (-)
ankdd1a ankdd1a other downstream 659281 6323277 ~ 6346561 (-)
LOC120555534 LOC103369663 other downstream 838313 6156222 ~ 6167529 (-)
lmnl3 LOC104943683 other upstream 307536 7330708 ~ 7344756 (-)
G26071 mex3b other upstream 1121035 8144207 ~ 8146901 (-)
LOC120555934 NA other upstream 1471181 8494353 ~ 8496635 (-)
il16 LOC102796330 other upstream 1607436 8630608 ~ 8697622 (-)
tlnrd1 mesdc1 other upstream 1710247 8733419 ~ 8758808 (-)

Expression


Co-expression Network