dhcr7 (dhcr7)


Basic Information

Item Value
gene id dhcr7
gene name dhcr7
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 3590280 ~ 3601433 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795927.1
TGCTCCTACGGTGAGTTTTACCCAGCGGTTGCATGATAACCAGCACCTGGCCCGGGAGGAAACAGGAGACGAGCAGCCCGCCTTCCCCTTGTTCTGTCTTTTATCTACGGAAATGAATGATGCAGTGGCCATGGAGGCCACCAGGAGACGAACCCAGCACCATGCCAATGGGAAAGCATCTGAACAGGGGGAGCAGCCAGCACAGTGGGGGAGAGCATGGGAGGTGGACTGGTTTTCCTTGAGCAGTGTGATTGGCCTCCTTTGCTTTGCCCCTTTCATTGTCTTCTACTTCGTGATGGCCTGTGATCAGTACCAGTGCTCTGTCAGCCAGCCTCTGTTGGAGCTGTACCAAGGAGAGACCACGCTGCTCTCCATCTGGGCCCGGGCACCCACCTTCACCTGGTCAGCTGCCAAGATATATGCCATCTGGGTGGCCTTCCAGGTGttcctgtatatgtgtgttcCTGATGTTACTCATAAGTTTATTCCCGGCTATGTTGGTGGAGTACAGGATGGAGCACGAACTCCTGCTGGCCTGATTAACAAGTATGAGGTCAACGGGCTGCAGTGTTGGCTGATCACTCATGCTCTGTGGTATGCCAACGCCCAGTATTTCCACTGGTTTTCTCCCACCATCATCTTCGACAACTGGATCCCCCTGATGTGGTGTGCTAACATACTGGGCTACGCTGTGTCCAGCTTTGCTTTCATAAAGGCCTACCTTTTCCCCACTAATGCTGAGGACTGCAAGTTCACAGGGAACGTCTTCTACAACTACATGATGGGCATCGAGTTCAACCCACGCATCGGCAAGTGGTTTGACTTCAAGCTTTTCTTCAACGGTCGGCCCGGCATCATAGCCTGGACTCTTATCAATCTGTCCTACATGGCCAAGCAGCAAGAACTGTACGGCCACGTCACCAACTCCATGATCCTGGTCAACGTACTGCAGgCCATTTATGTGTTGGATTTCTTCTGGAATGAGGCGTGGTACCTGAAGACCATTGATATCTGCCATGACCACTTTGGATGGTATCTGGGCTGGGGAGACTGTGTCTGGCTGCCGTACCTCTACACACTGCAGGGTCTGTACCTGGTGTACCAGCCAGTCCAGCTCTCCAACGCCCACGCCCTGGCTGTCCTGTTGCTCGGCCTGGTCGGGTATTACATCTTCCGCTCCGCCAACCACCAGAAGGACCTGTTCCGGCGGACCGACGGCTCGTGCTCCATCTGGGGCCGGAAGCCAGCGTACATCGAGTGCTCGTACCGCTCCACAGATGGCGGCGTTCATCGCAGCAAGCTCATGACCTCAGGTTTCTGGGGAGTGGCCCGCCACCTCAACTACACAGGGGACCTGATGGGTTCGCTGGCCTACTGCGCCGCCTGTGGCTTTGGCCACATACTCCCATACTTCTACATAGTATACATGACCATCCTGCTGGTCCACCGCTGTGTGCGCGATGAGCACCGCTGCAGCAGCAAGTACGGCAAGGACTGGAAGCGCTACACAGATGCTGTGCCTTACCGACTTATTCCTAGTGTGTTttagagaggggggggaaagaGCGGGAGGAGGGAGATCGAGAAGTAGGGTGGGGGCTAAGAATAAGGTAACATTGTAACAcccaacgtgacatcatgactttgcgtaaacatacacggcaaaatggcatacgaattgccgtgtcatacatacgccacttattgagatcagtctgtaaCACCACATTTCATACATTCTGAAATGGATATGCATGTCTAATGTGTAGCCAGCTATACATGTGTATATGCGGGTACAGAAACTATATTTCACTGCCTCGTTAAAGGCAGTTTGATAGACCAGCCTGCTGCTTTCAGTACACAGTTAGATAGTTAAGTAGTTAACTACATTTTAATAACAATACAATGTGTATTTGAAGCTGGTAAGACCAAGCTAATCTTAAACCAGCTGAACAGTAGCAACAGAAACAGTCAGTCCTGTAGTGGGCTGTTGTCTACAGCTACTCTCCTCAATGCTGTGACATTCCCATAATGCAGTTTGATAGTTACCAAGGCAAACATGGCTGGATCCAGTTTCTCAAACGTGAGAATTTgatgttttatatcattgtaaatgtAACACCTGTTGTTCAGTCAAAACAAGAATTTGATGATGTCACTTAGCACTTAGGTAGCCTATGATGGGGGCTTTTCATTAGCCTTGCCATTTTTCAACTAAATGTGTAATCATGAATGAAAAACTGATATATTTAATGATCAATTTTGTTGCCACTCTACTGGCTTAATGGACCAAATGTGATTGTTGGCTCCACTGACAAGACCCACCTCATAAAAAGTTATGTTCTCTTTGTTTAAAGGTTGTCTGAGTGCTCCGATGTATTCACTGTTGTTTATCTAACTCCAGGGGAACGtttgttaggttaggttattgcTTGTCCCTTGTTTCCTTGTtccttgtttttatttcctCAAAACCAGCACAGCCTTACTCGGAGCGATAAAGTAAAGAAACAAACTTCTCTTATGACTAA

Function

symbol description
dhcr7 Enables oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor. Predicted to be involved in brassinosteroid biosynthetic process and cholesterol biosynthetic process. Predicted to act upstream of or within cholesterol metabolic process and steroid biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in alar plate midbrain region; digestive system; optic tectum; optic vesicle; and retina. Human ortholog(s) of this gene implicated in Smith-Lemli-Opitz syndrome. Orthologous to human DHCR7 (7-dehydrocholesterol reductase).

NR:

description
PREDICTED: 7-dehydrocholesterol reductase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00213 DHCR7; 7-dehydrocholesterol reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795927.1 True 2531 mRNA 0.49 8 3590280 3601433

Neighbor

gene id symbol gene type direction distance location
LOC120555474 NA coding downstream 114388 3459107 ~ 3475892 (-)
LOC120555910 NA coding downstream 131547 3433759 ~ 3458733 (-)
LOC120555905 NA coding downstream 216588 3360553 ~ 3373692 (-)
LOC120555482 NA coding downstream 243073 3320424 ~ 3347207 (-)
slc7a6os slc7a6os,LOC102781591 coding downstream 272347 3309380 ~ 3317933 (-)
dpy19l3 dpy19l3 coding upstream 663811 4265244 ~ 4333520 (-)
znf507 NA coding upstream 750065 4351498 ~ 4375298 (-)
znf536 znf536,LOC102211462 coding upstream 1457101 5058534 ~ 5344208 (-)
ccne1 ccne1 coding upstream 2029189 5630622 ~ 5643404 (-)
si:ch211-260e23.9 LOC104921431 coding upstream 2052021 5653454 ~ 5663254 (-)
G25425 NA non-coding downstream 149 3589341 ~ 3590131 (-)
G25423 NA non-coding downstream 1010 3588980 ~ 3589270 (-)
G25388 NA non-coding downstream 67669 3508116 ~ 3522611 (-)
G25400 NA non-coding downstream 91744 3498171 ~ 3498536 (-)
G25394 NA non-coding downstream 121198 3468664 ~ 3469082 (-)
G25428 NA non-coding upstream 83291 3684724 ~ 3724120 (-)
G25433 NA non-coding upstream 200093 3801526 ~ 3801827 (-)
G25464 NA non-coding upstream 646157 4247590 ~ 4261470 (-)
G25484 NA non-coding upstream 740578 4342011 ~ 4342282 (-)
G25485 NA non-coding upstream 741896 4343329 ~ 4343538 (-)
G25228 NA other downstream 1313189 2275475 ~ 2277091 (-)
cep89 NA other downstream 1849441 1664770 ~ 1740839 (-)
LOC120556047 abcc12,LOC102304683,LOC101479372,LOC102203605 other downstream 1947932 1587544 ~ 1642348 (-)
LOC120556048 abcc12,LOC101479372,LOC101076737,LOC102203605,LOC100701509,LOC102304683 other downstream 2034634 1510165 ~ 1555646 (-)
LOC120555898 mctp2 other downstream 2133172 1410674 ~ 1457108 (-)
LOC120556425 ap2a2,LOC104921433,LOC104965011 other upstream 2078609 5680042 ~ 5717433 (-)
LOC120555534 LOC103369663 other upstream 2554789 6156222 ~ 6167529 (-)
ankdd1a ankdd1a other upstream 2721844 6323277 ~ 6346561 (-)
pop4 pop4,LOC105418436,LOC104960843 other upstream 2907826 6509259 ~ 6524355 (-)
tpcn2 tpcn2 other upstream 2932609 6534042 ~ 6590639 (-)

Expression


Co-expression Network