LOC120556384 (LOC104919714)


Basic Information

Item Value
gene id LOC120556384
gene name LOC104919714
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1176462 ~ 1190886 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795955.1
TGTCTGCCGGACAAAAGGCGAATCTGTTTGACGGTGGATTGAAACCCAATTAGAAACAGAggagacattttgggaaaactgTCAGTGTCCGTGTGTCCCGGCGCCCCAAGGCAAAGGATATATGGTAACATTAACATCTGTGGAGGCTCTTAGACTGGAATATTAAGGATGTTCCAGCAGTGTGAGGAGCCTCGTTTCACCATCGAGCAGATTGACCTCCTCCAGAGGCTACGGAGGACAGGTATAACACAGGTGGAGGTCCTCCACGCCCTGGACACCCTGGACCACCTGGACCGCCAGCATGGACACAAGTTGACCCATAAGCCTCCCTACATGCCTCCCTCGTCTTCCTTGTCTTCTTCCAGTATCGTCGTCGCCTCTTCTTCCATGACTTCCACCGCCACTCAGACAAGTTTCCCTAGCAACCGACTCTCCCCGTCACCTAATAACAACTTCGACACCGCCTCCCCGCTTCTACCGATTCCAGTAGCATCGCCTGTCACCATGGCAGCGGTAGTCCAGAACGGCCTAGTTGCTGTCACCAACGGGAAGCTGTCTCCTCCCCGGTTTCCTCTTGCTGTTGTGAGTGGCGGTGTCACGGCGCCAGGCTACGGGTTCGAGACCAGCGAAGAGGACTTAGATGTTGATGACAAGGTGGAGGACTTGATGAGGAGGGACAGTGCTATAATCAAAGAAGAGATTAAGTCCTTCCTGGCGAACAGGCGGATCTCCCAGGCTGTGGTCGCTCAGGTAACGGGGATCAGTCAGAGTCGGATCTCCCACTGGCTCCTACAGCAGGGATCAGACCTCAGCGAGCAGAAGAAAAGAGCCTTCTTTCGCTGGTACCAGCTGGAGAAAAGCAACCCTGGTGCCACTCTTGCTATGCGAGCCGCCCCATTGGCTCTGGAGGAGGTGATGGACTGGCATCAAGCCCCGCCTCCATTTGGCTCGGCCCCCGGGGGCTTCCGCCTGCGGCGAGGGAGCAGATTCACCTGGAGGAAGGAGTGTCTGGCTGTTATGGAGAGCTACTTCATTGATAACCAGTACCCCGATGAAGCCAAGAGAGAGGAGATCGCCACCGCCTGCAACGCTGTCATTCAGAAACCAGgaaAGAAGCTGTCCGATTTGGAGAGGGTAACATCTCTGAAGGTCTACAACTGGTTTGCCAACCGCCGCAAAGACATCAAGAGGCGTGCTAACATTGAAGCAGCCATCTTGGAGAGCCACGGCATCGAGGTTCAGAGTCCAGGCGGTCAGTCCAACAGCGACGAGGTGGATGGCAACGACTTCCCCGACCAGGGTTGTGAGGTGTCCTTATTTGACAAGAGAGCTTCAGCCAGGCACTTTGGTTTCAGTCGAGCTGACCTGTCCTCTCCAACCCAGGTACCCACAATGCTCCCCAGCTGGTTTTCTGCCCTGGGTAGAGGAGGCTTGTCTGGACAGAGAGGCACTTCTCTGATTGGCCGATCCCTCGTGTCGGGGGCCGGCCCTCAGGCGGAAGGTTCCAGATTGACAGGCGTGTCCTGGTCTCCCCCCTCGCCCTCCCTCCAGGACGAACCCGCGCTGTCCGAGCCCCAGGACCCAATCGGTTTGGAGAAGGCGGCTGTCAATCACAGCAACCAAGCCCTAGCCAATCAGGTGGATGCGGCGGGGCGCGGTATTGGGAATGACATCAAGACGGAAACGCTGGAGGACGACTGAAATGGGTGCTGGATATTGGAGTAGTCAGAGTGATGAATGGAACAGGATCAGAGGTGTGTTAATATGCAAGCAGATTTTATAGGAATGTAAtaagtggaaaaaaagaagaccaAAAGTCGTGTAAACTCCAACCCTGAGATACCTCCCAACCCTACCTCCAACCACCAACCTGCTCTGCTACGCTCTTATACTGTAGGCATTACTAgtatattataataatgataataataacaatacactTTGATTTGTTAAAGTGCATCCCAGCAGGCTATGGATGATTACAAATGCCTATATAATAACAAATCAAACAAAGAAAGTGAAAtagattatgaattatttaattATGACACATAGCagtgtgtattgtttttcactttATTTCTTTGCTGATTTGTTTTAGGCATTTTAAATCTTCCGTACGGACTGTCTAACGGGACTTGATGCATTGTGCAGATTTTTTTGGAAACTGCATTCTCCACCGCAGGACAACACTGTATTTGACACAGGGTTCAAATCATTTCAGGGTCTTGCACTGTGATCACAACACAACTGAACAGCCTCAAAAGATAAATGCATGAATTTGAAGTTAAGTTTAACTGATTGTTTTTAAAATTATGTTAAATTCATGAATCACAGTTGCTTACATTTCAAATTTTGGCTGTTGGTTCCTTCCAGTGGGGAGAACAGCAGAATCCCAGCACGTAGGGAATATTTCTGTGGGCCTAAAGATGATTTGAAAtgttaaaaagagaaagaaacagaagGACCCGCACCTCTGTACCCTGCCCTGGTTTATAAGCTCAATATATGGAAGCAAAGAAAGGAATAcctaattgaaattgaaatagcACTGAGTGGATAgcattgaaatgttttaattCACAAAccatctatctgaattccagtgGTCTCTCTTTGTTTCCATATTAAATacaagtaataaaataaaaggtaatCAATACATAAATGTTGAAGCTAGACGAAACCGTAGAAAAATAGAATTGAATAATAGAATGAGTTTGTGGCCGATGGCTGACCAGGCGGAATGAATGCTCACTGTGAGGTGATCTATAATCAATACAGGTCAGTCAGTTGGGAGGTATTCAACAGTGTAACAACGTGTAACatgaatacatacatatactacACATGGATGTATGCAAACACacgtatatacagtatgttatatAAACTGTggggtacatactgtatatgtacccTGATCCATTTCTAGTTACAGTATATAGACGTATTAGCTTCAAATGAGAGAAACTATCAGTGTGAGTCTTTCTGTTGGTGAAAGGTGAGTGAAGCACTAGCCAAAGTATTAAGTTTGAATTGTGTGTATTTTCTGAGTGTGTGATAGTCATGGGTGGAACTATGTATTAGAGATACGCTAATCAAA
>XM_039795956.1
TGTCTGCCGGACAAAAGGCGAATCTGTTTGACGGTGGATTGAAACCCAATTAGAAACAGAggagacattttgggaaaactgTCAGTGTCCGTGTGTCCCGGCGCCCCAAGGCAAAGGATATATGGTAACATTAACATCTGTGGAGGCTCTTAGACTGGAATATTAAGGATGTTCCAGCAGTGTGAGGAGCCTCGTTTCACCATCGAGCAGATTGACCTCCTCCAGAGGCTACGGAGGACAGGTATAACACAGGTGGAGGTCCTCCACGCCCTGGACACCCTGGACCACCTGGACCGCCAGCATGGACACAAGTTGACCCATAAGCCTCCCTACATGCCTCCCTCGTCTTCCTTGTCTTCTTCCAGTATCGTCGTCGCCTCTTCTTCCATGACTTCCACCGCCACTCAGACAAGTTTCCCTAGCAACCGACTCTCCCCGTCACCTAATAACAACTTCGACACCGCCTCCCCGCTTCTACCGATTCCAGTAGCATCGCCTGTCACCATGGCAGCGGTAGTCCAGAACGGCCTAGTTGCTGTCACCAACGGGAAGCTGTCTCCTCCCCGGTTTCCTCTTGCTGTTGTGAGTGGCGGTGTCACGGCGCCAGGCTACGGGTTCGAGACCAGCGAAGAGGACTTAGATGTTGATGACAAGGTGGAGGACTTGATGAGGAGGGACAGTGCTATAATCAAAGAAGAGATTAAGTCCTTCCTGGCGAACAGGCGGATCTCCCAGGCTGTGGTCGCTCAGGTAACGGGGATCAGTCAGAGTCGGATCTCCCACTGGCTCCTACAGCAGGGATCAGACCTCAGCGAGCAGAAGAAAAGAGCCTTCTTTCGCTGGTACCAGCTGGAGAAAAGCAACCCTGGTGCCACTCTTGCTATGCGAGCCGCCCCATTGGCTCTGGAGGAGGTGATGGACTGGCATCAAGCCCCGCCTCCATTTGGCTCGGCCCCCGGGGGCTTCCGCCTGCGGCGAGGGAGCAGATTCACCTGGAGGAAGGAGTGTCTGGCTGTTATGGAGAGCTACTTCATTGATAACCAGTACCCCGATGAAGCCAAGAGAGAGGAGATCGCCACCGCCTGCAACGCTGTCATTCAGAAACCAGgaaAGAAGCTGTCCGATTTGGAGAGGGTAACATCTCTGAAGGTCTACAACTGGTTTGCCAACCGCCGCAAAGACATCAAGAGGCGTGCTAACATTGCAGCCATCTTGGAGAGCCACGGCATCGAGGTTCAGAGTCCAGGCGGTCAGTCCAACAGCGACGAGGTGGATGGCAACGACTTCCCCGACCAGGGTTGTGAGGTGTCCTTATTTGACAAGAGAGCTTCAGCCAGGCACTTTGGTTTCAGTCGAGCTGACCTGTCCTCTCCAACCCAGGTACCCACAATGCTCCCCAGCTGGTTTTCTGCCCTGGGTAGAGGAGGCTTGTCTGGACAGAGAGGCACTTCTCTGATTGGCCGATCCCTCGTGTCGGGGGCCGGCCCTCAGGCGGAAGGTTCCAGATTGACAGGCGTGTCCTGGTCTCCCCCCTCGCCCTCCCTCCAGGACGAACCCGCGCTGTCCGAGCCCCAGGACCCAATCGGTTTGGAGAAGGCGGCTGTCAATCACAGCAACCAAGCCCTAGCCAATCAGGTGGATGCGGCGGGGCGCGGTATTGGGAATGACATCAAGACGGAAACGCTGGAGGACGACTGAAATGGGTGCTGGATATTGGAGTAGTCAGAGTGATGAATGGAACAGGATCAGAGGTGTGTTAATATGCAAGCAGATTTTATAGGAATGTAAtaagtggaaaaaaagaagaccaAAAGTCGTGTAAACTCCAACCCTGAGATACCTCCCAACCCTACCTCCAACCACCAACCTGCTCTGCTACGCTCTTATACTGTAGGCATTACTAgtatattataataatgataataataacaatacactTTGATTTGTTAAAGTGCATCCCAGCAGGCTATGGATGATTACAAATGCCTATATAATAACAAATCAAACAAAGAAAGTGAAAtagattatgaattatttaattATGACACATAGCagtgtgtattgtttttcactttATTTCTTTGCTGATTTGTTTTAGGCATTTTAAATCTTCCGTACGGACTGTCTAACGGGACTTGATGCATTGTGCAGATTTTTTTGGAAACTGCATTCTCCACCGCAGGACAACACTGTATTTGACACAGGGTTCAAATCATTTCAGGGTCTTGCACTGTGATCACAACACAACTGAACAGCCTCAAAAGATAAATGCATGAATTTGAAGTTAAGTTTAACTGATTGTTTTTAAAATTATGTTAAATTCATGAATCACAGTTGCTTACATTTCAAATTTTGGCTGTTGGTTCCTTCCAGTGGGGAGAACAGCAGAATCCCAGCACGTAGGGAATATTTCTGTGGGCCTAAAGATGATTTGAAAtgttaaaaagagaaagaaacagaagGACCCGCACCTCTGTACCCTGCCCTGGTTTATAAGCTCAATATATGGAAGCAAAGAAAGGAATAcctaattgaaattgaaatagcACTGAGTGGATAgcattgaaatgttttaattCACAAAccatctatctgaattccagtgGTCTCTCTTTGTTTCCATATTAAATacaagtaataaaataaaaggtaatCAATACATAAATGTTGAAGCTAGACGAAACCGTAGAAAAATAGAATTGAATAATAGAATGAGTTTGTGGCCGATGGCTGACCAGGCGGAATGAATGCTCACTGTGAGGTGATCTATAATCAATACAGGTCAGTCAGTTGGGAGGTATTCAACAGTGTAACAACGTGTAACatgaatacatacatatactacACATGGATGTATGCAAACACacgtatatacagtatgttatatAAACTGTggggtacatactgtatatgtacccTGATCCATTTCTAGTTACAGTATATAGACGTATTAGCTTCAAATGAGAGAAACTATCAGTGTGAGTCTTTCTGTTGGTGAAAGGTGAGTGAAGCACTAGCCAAAGTATTAAGTTTGAATTGTGTGTATTTTCTGAGTGTGTGATAGTCATGGGTGGAACTATGTATTAGAGATACGCTAATCAAA
>XM_039795957.1
TGTCTGCCGGACAAAAGGCGAATCTGTTTGACGGTGGATTGAAACCCAATTAGAAACAGAggagacattttgggaaaactgTCAGTGTCCGTGTGTCCCGGCGCCCCAAGGCAAAGGATATATGGTAACATTAACATCTGTGGAGGCTCTTAGACTGGAATATTAAGGATGTTCCAGCAGTGTGAGGAGCCTCGTTTCACCATCGAGCAGATTGACCTCCTCCAGAGGCTACGGAGGACAGGTATAACACAGGTGGAGGTCCTCCACGCCCTGGACACCCTGGACCACCTGGACCGCCAGCATGGACACAAGTTGACCCATAAGCCTCCCTACATGCCTCCCTCGTCTTCCTTGTCTTCTTCCAGTATCGTCGTCGCCTCTTCTTCCATGACTTCCACCGCCACTCAGACAAGTTTCCCTAGCAACCGACTCTCCCCGTCACCTAATAACAACTTCGACACCGCCTCCCCGCTTCTACCGATTCCAGTAGCATCGCCTGTCACCATGGCAGCGGTAGTCCAGAACGGCCTAGTTGCTGTCACCAACGGGAAGCTGTCTCCTCCCCGGTTTCCTCTTGCTGTTGTGAGTGGCGGTGTCACGGCGCCAGGCTACGGGTTCGAGACCAGCGAAGAGGACTTAGATGTTGATGACAAGGTGGAGGACTTGATGAGGAGGGACAGTGCTATAATCAAAGAAGAGATTAAGTCCTTCCTGGCGAACAGGCGGATCTCCCAGGCTGTGGTCGCTCAGGTAACGGGGATCAGTCAGAGTCGGATCTCCCACTGGCTCCTACAGCAGGGATCAGACCTCAGCGAGCAGAAGAAAAGAGCCTTCTTTCGCTGGTACCAGCTGGAGAAAAGCAACCCTGGTGCCACTCTTGCTATGCGAGCCGCCCCATTGGCTCTGGAGGAGGTGATGGACTGGCATCAAGCCCCGCCTCCATTTGGCTCGGCCCCCGGGGGCTTCCGCCTGCGGCGAGGGAGCAGATTCACCTGGAGGAAGGAGTGTCTGGCTGTTATGGAGAGCTACTTCATTGATAACCAGTACCCCGATGAAGCCAAGAGAGAGGAGATCGCCACCGCCTGCAACGCTGTCATTCAGAAACCAGgaaAGAAGCTGTCCGATTTGGAGAGGGTAACATCTCTGAAGGTCTACAACTGGTTTGCCAACCGCCGCAAAGACATCAAGAGGCGTGCTAACATTGCCATCTTGGAGAGCCACGGCATCGAGGTTCAGAGTCCAGGCGGTCAGTCCAACAGCGACGAGGTGGATGGCAACGACTTCCCCGACCAGGGTTGTGAGGTGTCCTTATTTGACAAGAGAGCTTCAGCCAGGCACTTTGGTTTCAGTCGAGCTGACCTGTCCTCTCCAACCCAGGTACCCACAATGCTCCCCAGCTGGTTTTCTGCCCTGGGTAGAGGAGGCTTGTCTGGACAGAGAGGCACTTCTCTGATTGGCCGATCCCTCGTGTCGGGGGCCGGCCCTCAGGCGGAAGGTTCCAGATTGACAGGCGTGTCCTGGTCTCCCCCCTCGCCCTCCCTCCAGGACGAACCCGCGCTGTCCGAGCCCCAGGACCCAATCGGTTTGGAGAAGGCGGCTGTCAATCACAGCAACCAAGCCCTAGCCAATCAGGTGGATGCGGCGGGGCGCGGTATTGGGAATGACATCAAGACGGAAACGCTGGAGGACGACTGAAATGGGTGCTGGATATTGGAGTAGTCAGAGTGATGAATGGAACAGGATCAGAGGTGTGTTAATATGCAAGCAGATTTTATAGGAATGTAAtaagtggaaaaaaagaagaccaAAAGTCGTGTAAACTCCAACCCTGAGATACCTCCCAACCCTACCTCCAACCACCAACCTGCTCTGCTACGCTCTTATACTGTAGGCATTACTAgtatattataataatgataataataacaatacactTTGATTTGTTAAAGTGCATCCCAGCAGGCTATGGATGATTACAAATGCCTATATAATAACAAATCAAACAAAGAAAGTGAAAtagattatgaattatttaattATGACACATAGCagtgtgtattgtttttcactttATTTCTTTGCTGATTTGTTTTAGGCATTTTAAATCTTCCGTACGGACTGTCTAACGGGACTTGATGCATTGTGCAGATTTTTTTGGAAACTGCATTCTCCACCGCAGGACAACACTGTATTTGACACAGGGTTCAAATCATTTCAGGGTCTTGCACTGTGATCACAACACAACTGAACAGCCTCAAAAGATAAATGCATGAATTTGAAGTTAAGTTTAACTGATTGTTTTTAAAATTATGTTAAATTCATGAATCACAGTTGCTTACATTTCAAATTTTGGCTGTTGGTTCCTTCCAGTGGGGAGAACAGCAGAATCCCAGCACGTAGGGAATATTTCTGTGGGCCTAAAGATGATTTGAAAtgttaaaaagagaaagaaacagaagGACCCGCACCTCTGTACCCTGCCCTGGTTTATAAGCTCAATATATGGAAGCAAAGAAAGGAATAcctaattgaaattgaaatagcACTGAGTGGATAgcattgaaatgttttaattCACAAAccatctatctgaattccagtgGTCTCTCTTTGTTTCCATATTAAATacaagtaataaaataaaaggtaatCAATACATAAATGTTGAAGCTAGACGAAACCGTAGAAAAATAGAATTGAATAATAGAATGAGTTTGTGGCCGATGGCTGACCAGGCGGAATGAATGCTCACTGTGAGGTGATCTATAATCAATACAGGTCAGTCAGTTGGGAGGTATTCAACAGTGTAACAACGTGTAACatgaatacatacatatactacACATGGATGTATGCAAACACacgtatatacagtatgttatatAAACTGTggggtacatactgtatatgtacccTGATCCATTTCTAGTTACAGTATATAGACGTATTAGCTTCAAATGAGAGAAACTATCAGTGTGAGTCTTTCTGTTGGTGAAAGGTGAGTGAAGCACTAGCCAAAGTATTAAGTTTGAATTGTGTGTATTTTCTGAGTGTGTGATAGTCATGGGTGGAACTATGTATTAGAGATACGCTAATCAAA

Function

NR:

description
PREDICTED: homeobox-containing protein 1 isoform X2

GO: NA

KEGG:

id description
K24885 HMBOX1; homeobox-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795955.1 True 3106 mRNA 0.47 10 1176462 1190886
XM_039795956.1 False 3103 mRNA 0.47 10 1176462 1190886
XM_039795957.1 False 3100 mRNA 0.47 10 1176462 1190886

Neighbor

gene id symbol gene type direction distance location
pdpr pdpr coding downstream 120168 1037755 ~ 1056294 (-)
mrpl46 mrpl46 coding downstream 146407 1021963 ~ 1030055 (-)
sv2ba LOC103359500,LOC101162590,LOC101062552 coding downstream 849734 301918 ~ 326728 (-)
mespba LOC103359507 coding downstream 880175 293684 ~ 296287 (-)
mespaa LOC101162828 coding downstream 886087 289261 ~ 290375 (-)
tdp1 tdp1 coding upstream 2154 1193040 ~ 1203082 (-)
LOC120555617 NA coding upstream 268278 1459164 ~ 1507908 (-)
rhpn2 rhpn2 coding upstream 553306 1744192 ~ 1774421 (-)
lrp3 lrp3 coding upstream 627545 1818431 ~ 1831946 (-)
trnat-agu_3 NA coding upstream 642435 1833321 ~ 1833394 (-)
G24941 NA non-coding downstream 1908 1171389 ~ 1174554 (-)
G24942 NA non-coding downstream 6703 1165662 ~ 1169759 (-)
G24935 NA non-coding downstream 25125 1151022 ~ 1151337 (-)
G24934 NA non-coding downstream 25505 1150228 ~ 1150957 (-)
G24931 NA non-coding downstream 42673 1133519 ~ 1133789 (-)
G24954 eprs non-coding upstream 17672 1208558 ~ 1209459 (-)
G24955 eprs non-coding upstream 25640 1216526 ~ 1216930 (-)
G24974 NA non-coding upstream 49881 1240767 ~ 1242703 (-)
G24978 NA non-coding upstream 61832 1252718 ~ 1254624 (-)
G24987 LOC102205592,LOC101476278,LOC102787001,LOC102297232,LOC100534518,LOC101075605 non-coding upstream 75800 1266686 ~ 1266960 (-)
pnoca NA other downstream 71295 1061104 ~ 1105167 (-)
ntrk3b NA other downstream 254913 706157 ~ 921549 (-)
LOC120555898 mctp2 other upstream 219788 1410674 ~ 1457108 (-)
LOC120556048 abcc12,LOC101479372,LOC101076737,LOC102203605,LOC100701509,LOC102304683 other upstream 319279 1510165 ~ 1555646 (-)
LOC120556047 abcc12,LOC102304683,LOC101479372,LOC102203605 other upstream 396658 1587544 ~ 1642348 (-)
cep89 NA other upstream 473884 1664770 ~ 1740839 (-)
G25228 NA other upstream 1084589 2275475 ~ 2277091 (-)

Expression


Co-expression Network