LOC120556394 (LOC104958904,LOC103352838,LOC105933796,LOC103378628,LOC107088303,LOC107687747)


Basic Information

Item Value
gene id LOC120556394
gene name LOC104958904,LOC103352838,LOC105933796,LOC103378628,LOC107088303,LOC107687747
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21352531 ~ 21362696 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795977.1
GGGTCGCCTGAACGGCACGGCACAGCTCTGCTGGTAGGGGGCGACACGGCGTAAGACGAGTCTGTTCTGCTTACCACTGAAAACTTTGGCAACAGCGAAAGGAATTAGCTAGCACACCAATTACTGTATTAGTTTCTAAAACTGTCGTGATCGGCGGTGATGCTGGGGGTGGCTGGAATGACGGGCAGCATTGCTAATGCCCTGGCCAGTGCGGCCTGTGAGCGATGTAAGAGTGGCTTTGCTCCAACTGAGAAGATTGTCAACAGTAATGGAGAGCTGTACCATGAGCAGTGCTTTGTGTGTGCTCAGTGTTTTCAGCAGTTCCCAGATGGACTCTTCTATGAGTTTGAAGGAAGAAAATATTGTGAACATGACTTCCAGATGCTCTTTGCCCCTTGCTGTCACCAGTGTGGGGAGTTCATCATTGGTCGTGTCATTAAGGCCATGAACAATAGTTGGCACCCTGACTGCTTCTGCTGTGACATTTGCCAGGCTGTGCTTGCAGACGTGGGGTTTGTCAAAAATGCTGGCAGGCACCTCTGTCGACCATGCCATAACCGCGAGAAAGCTCGTGGCCTGGGCAAGTATATCTGCCAGAAGTGCCATGCCATCATCGAGGAGCAGCCACTGATCTTTAAGAATGACCCATATCACCCAGACCACTTCAACTGCAGCAACTGTGGGAAAGAATTGACAGTTGAAGCCAGGGAACTCAAGGGAGAGCTCTTCTGTTTGCCCTGCCACGACAAGATGGGTGTACCAATCTGTGGCGCCTGTAGGAGACCTATTGAGGGGCGTGTTGTCAATGCCATGGGCAAGCAGTGGCATGTGGAGcattttgtgtgtgccaAGTGTGAGAAGCCTTTCCTCGGCCATCGGCATTACGAGAGGAAGGGATTGGCTTACTGTGAGACTCATTATAACCAGCTCTTCGGCGATGTGTGCTATCACTGCAACCGTGTGATTGAAGGCGATGTGGTGTCTGCTCTCAACAAGGCTTGGTGTGTCAGTTGTTTCTCATGCTCCACCTGCCACACTAAACTCACTCTCAAAGATAAGTTTGTTGAAATTGACCTGAAGCCGGTATGCAAGCACTGCTACGAGCGCATGCCTGAGGAGCTGAAACGACGCTTGGCTCGGCGTGAGCGTGATGCCAAAGACCGCAAGAAAAAAGCCGCTGTCTGTCTGTAGTGTGGTTATTGTTCACAACTCACCACTCCATCCTTGGAACAAGTTTGTTGAGTTTGACATGAAGCCTGTTTGTAAAAAGTGTTATGAGAAGTTTCCTCTGGAGCTGAAGAAAAGGCTCAAGAAGCTAGCCGAGTCCTTGGGACGCAAGTAAACTGCTCCTGGCCCAAC
>XM_039795978.1
TTACCAAATTAGGCGATGGCTGTGCACATTGCTAATGCCCTGGCCAGTGCGGCCTGTGAGCGATGTAAGAGTGGCTTTGCTCCAACTGAGAAGATTGTCAACAGTAATGGAGAGCTGTACCATGAGCAGTGCTTTGTGTGTGCTCAGTGTTTTCAGCAGTTCCCAGATGGACTCTTCTATGAGTTTGAAGGAAGAAAATATTGTGAACATGACTTCCAGATGCTCTTTGCCCCTTGCTGTCACCAGTGTGGGGAGTTCATCATTGGTCGTGTCATTAAGGCCATGAACAATAGTTGGCACCCTGACTGCTTCTGCTGTGACATTTGCCAGGCTGTGCTTGCAGACGTGGGGTTTGTCAAAAATGCTGGCAGGCACCTCTGTCGACCATGCCATAACCGCGAGAAAGCTCGTGGCCTGGGCAAGTATATCTGCCAGAAGTGCCATGCCATCATCGAGGAGCAGCCACTGATCTTTAAGAATGACCCATATCACCCAGACCACTTCAACTGCAGCAACTGTGGGAAAGAATTGACAGTTGAAGCCAGGGAACTCAAGGGAGAGCTCTTCTGTTTGCCCTGCCACGACAAGATGGGTGTACCAATCTGTGGCGCCTGTAGGAGACCTATTGAGGGGCGTGTTGTCAATGCCATGGGCAAGCAGTGGCATGTGGAGcattttgtgtgtgccaAGTGTGAGAAGCCTTTCCTCGGCCATCGGCATTACGAGAGGAAGGGATTGGCTTACTGTGAGACTCATTATAACCAGCTCTTCGGCGATGTGTGCTATCACTGCAACCGTGTGATTGAAGGCGATGTGGTGTCTGCTCTCAACAAGGCTTGGTGTGTCAGTTGTTTCTCATGCTCCACCTGCCACACTAAACTCACTCTCAAAGATAAGTTTGTTGAAATTGACCTGAAGCCGGTATGCAAGCACTGCTACGAGCGCATGCCTGAGGAGCTGAAACGACGCTTGGCTCGGCGTGAGCGTGATGCCAAAGACCGCAAGAAAAAAGCCGCTGTCTGTCTGTAGTGTGGTTATTGTTCACAACTCACCACTCCATCCTTGGAACAAGTTTGTTGAGTTTGACATGAAGCCTGTTTGTAAAAAGTGTTATGAGAAGTTTCCTCTGGAGCTGAAGAAAAGGCTCAAGAAGCTAGCCGAGTCCTTGGGACGCAAGTAAACTGCTCCTGGCCCAAC
>XM_039795979.1
TCGCCTGAACGGCACGGCACAGCTCTGCTGGTAGGGGGCGACACGGCGTAAGACGAGTCTGTTCTGCTTACCACTGAAAACTTTGGCAACAGCGAAAGGAATTAGCTAGCACACCAATTACTGTATTAGTTTCTAAAACTGTCGTGATCGGCGGTGATGCTGGGGGTGGCTGGAATGACGGGCAGCATTGCTAATGCCCTGGCCAGTGCGGCCTGTGAGCGATGTAAGAGTGGCTTTGCTCCAACTGAGAAGATTGTCAACAGTAATGGAGAGCTGTACCATGAGCAGTGCTTTGTGTGTGCTCAGTGTTTTCAGCAGTTCCCAGATGGACTCTTCTATGAGTTTGAAGGAAGAAAATATTGTGAACATGACTTCCAGATGCTCTTTGCCCCTTGCTGTCACCAGTGTGGGGAGTTCATCATTGGTCGTGTCATTAAGGCCATGAACAATAGTTGGCACCCTGACTGCTTCTGCTGTGACATTTGCCAGGCTGTGCTTGCAGACGTGGGGTTTGTCAAAAATGCTGGCAGGCACCTCTGTCGACCATGCCATAACCGCGAGAAAGCTCGTGGCCTGGGCAAGTATATCTGCCAGAAGTGCCATGCCATCATCGAGGAGCAGCCACTGATCTTTAAGAATGACCCATATCACCCAGACCACTTCAACTGCAGCAACTGTGGGAAAGAATTGACAGTTGAAGCCAGGGAACTCAAGGGAGAGCTCTTCTGTTTGCCCTGCCACGACAAGATGGGTGTACCAATCTGTGGCGCCTGTAGGAGACCTATTGAGGGGCGTGTTGTCAATGCCATGGGCAAGCAGTGGCATGTGGAGcattttgtgtgtgccaAGTGTGAGAAGCCTTTCCTCGGCCATCGGCATTACGAGAGGAAGGGATTGGCTTACTGTGAGACTCATTATAACCAGCTCTTCGGCGATGTGTGCTATCACTGCAACCGTGTGATTGAAGGCGATGTGGTGTCTGCTCTCAACAAGGCTTGGTGTGTCAGTTGTTTCTCATGCTCCACCTGCCACACTAAACTCACTCTCAAGAACAAGTTTGTTGAGTTTGACATGAAGCCTGTTTGTAAAAAGTGTTATGAGAAGTTTCCTCTGGAGCTGAAGAAAAGGCTCAAGAAGCTAGCCGAGTCCTTGGGACGCAAGTAAACTGCTCCTGGCCCAACAACCTGGAAGTGTTCCTCCGATGTCTGTGATGGTAAAACATCCAGGACGAATAACAACATAAGGACCCAGCGTTATACCAGAACATCAAGATTAGTCCTTTAAATGGGatccgatttaaaaaaaaaatatatatatatataaatgtatatcaCTGTGGTGTTGTCATAAAAGGGGCCTGTTCGCAGATgccctttttatatatatatatatatatgaaaatgttaattttttttaaacattcctAAATTGTCCAAATTAGTTTTTCTCTCTAGAAAAGATGTGTTGTCCCAGTTTATGACTTTACCAtgagcattatttgaaaatggctgtctaaaatattcattaatttgaaaagaTTGCTGTTTGACATTATATTGAATTACACGTGTGCCTTGAATATATATAAACTGTGTCTTAAAATGCATATTATGGTTAAAATGTGACTTACATGCAGTTATAATAGTTATGCCTTAATATACCCCAAATCAGAATTCTACCTGCCTTCTCAACTTTGAGTGTTTAATACCTCAGAATGAATAATTTACAAAGCATCCACTGTATTCTTTAGGATATTGTAATGATGTCTCCTCTTGctaacatgaaaaaaataacatgtttCAAGAAAAACTTAGATATGAGGTATCACTGGGAGCAAGGCTTATATACAAACCATTAAGTGTTAATGAATCCACTGGATATggttaatataataaatatcagATGGTAATTAA
>XM_039795980.1
ATTAGCATGCCAACGTAACCATTGGGgtaaagttagctagctaaccgcTTAGCTAGAATAGATGCACCCTTTTTAAGGCACCAGCAAAAAACATTGCTAATGCCCTGGCCAGTGCGGCCTGTGAGCGATGTAAGAGTGGCTTTGCTCCAACTGAGAAGATTGTCAACAGTAATGGAGAGCTGTACCATGAGCAGTGCTTTGTGTGTGCTCAGTGTTTTCAGCAGTTCCCAGATGGACTCTTCTATGAGTTTGAAGGAAGAAAATATTGTGAACATGACTTCCAGATGCTCTTTGCCCCTTGCTGTCACCAGTGTGGCCATGAACAATAGTTGGCACCCTGACTGCTTCTGCTGTGACATTTGCCAGGCTGTGCTTGCAGACGTGGGGTTTGTCAAAAATGCTGGCAGGCACCTCTGTCGACCATGCCATAACCGCGAGAAAGCTCGTGGCCTGGGCAAGTATATCTGCCAGAAGTGCCATGCCATCATCGAGGAGCAGCCACTGATCTTTAAGAATGACCCATATCACCCAGACCACTTCAACTGCAGCAACTGTGGGAAAGAATTGACAGTTGAAGCCAGGGAACTCAAGGGAGAGCTCTTCTGTTTGCCCTGCCACGACAAGATGGGTGTACCAATCTGTGGCGCCTGTAGGAGACCTATTGAGGGGCGTGTTGTCAATGCCATGGGCAAGCAGTGGCATGTGGAGcattttgtgtgtgccaAGTGTGAGAAGCCTTTCCTCGGCCATCGGCATTACGAGAGGAAGGGATTGGCTTACTGTGAGACTCATTATAACCAGCTCTTCGGCGATGTGTGCTATCACTGCAACCGTGTGATTGAAGGCGATGTGGTGTCTGCTCTCAACAAGGCTTGGTGTGTCAGTTGTTTCTCATGCTCCACCTGCCACACTAAACTCACTCTCAAAGATAAGTTTGTTGAAATTGACCTGAAGCCGGTATGCAAGCACTGCTACGAGCGCATGCCTGAGGAGCTGAAACGACGCTTGGCTCGGCGTGAGCGTGATGCCAAAGACCGCAAGAAAAAAGCCGCTGTCTGTCTGTAGTGTGGTTATTGTTCACAACTCACCACTCCATCCTTGGAACAAGTTTGTTGAGTTTGACATGAAGCCTGTTTGTAAAAAGTGTTATGAGAAGTTTCCTCTGGAGCTGAAGAAAAGGCTCAAGAAGCTAGCCGAGTCCTTGGGACGCAAGTAAACTGCTCCTGGCCCAAC

Function

NR:

description
PREDICTED: LIM and senescent cell antigen-like-containing domain protein 1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23354 LIMS1_2, PINCH1_2; LIM and senescent cell antigen-like-containing domain protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795977.1 False 1359 mRNA 0.51 12 21353263 21362696
XM_039795978.1 False 1197 mRNA 0.50 12 21353263 21361740
XM_039795979.1 True 1913 mRNA 0.43 10 21352531 21362693
XM_039795980.1 False 1233 mRNA 0.50 12 21353263 21362445

Neighbor

gene id symbol gene type direction distance location
pcdh17 LOC104926281,LOC104949434 coding downstream 362306 20920944 ~ 20990225 (-)
tdrd3 tdrd3 coding downstream 854806 20475627 ~ 20497725 (-)
LOC120556479 NA coding downstream 1073345 20253713 ~ 20279186 (-)
gpalpp1 gpalpp1 coding downstream 1840818 19508685 ~ 19511713 (-)
gtf2f2a gtf2f2 coding downstream 1843999 19500529 ~ 19508532 (-)
txnl4b txnl4b coding upstream 6216 21368912 ~ 21371958 (-)
blzf1 blzf1 coding upstream 11518 21374214 ~ 21380699 (-)
LOC120556407 atp4b,LOC102779491 coding upstream 52511 21415207 ~ 21419254 (-)
gas6 gas6 coding upstream 91771 21454467 ~ 21472489 (-)
pros1 pros1 coding upstream 112238 21474934 ~ 21483612 (-)
G28799 NA non-coding downstream 105965 21246351 ~ 21246566 (-)
G28797 NA non-coding downstream 131086 21221136 ~ 21221445 (-)
G28796 NA non-coding downstream 214154 21138049 ~ 21138377 (-)
G28793 NA non-coding downstream 278627 21073550 ~ 21073904 (-)
G28782 NA non-coding downstream 476245 20876032 ~ 20876286 (-)
G29022 NA non-coding upstream 781557 22144253 ~ 22144464 (-)
G29023 samd3 non-coding upstream 798930 22161626 ~ 22162235 (-)
G29090 NA non-coding upstream 1005435 22368131 ~ 22368562 (-)
G29089 LOC103139356,LOC103461942,LOC106928198 non-coding upstream 1006640 22369336 ~ 22371707 (-)
G29095 NA non-coding upstream 1030649 22393345 ~ 22393560 (-)
LOC120555836 pcnp other downstream 2226120 19123541 ~ 19126411 (-)
LOC120555695 NA other downstream 2282535 19054091 ~ 19069996 (-)
G28345 NA other downstream 2632512 18719372 ~ 18720019 (-)
LOC120556268 btbd1 other downstream 2693872 18650029 ~ 18658659 (-)
G28269 mapk6 other downstream 2932032 18416069 ~ 18420499 (-)
LOC120555658 NA other upstream 217272 21579968 ~ 21583558 (-)
G28933 NA other upstream 218346 21581042 ~ 21583498 (-)
gpc6a LOC101477426,LOC100710496,LOC102798074,LOC103365236,LOC102217784 other upstream 523892 21886588 ~ 22051625 (-)
LOC120555944 LOC103365297,LOC100709700,LOC102795695,LOC102312860 other upstream 908174 22270870 ~ 22336817 (-)
cbfa2t3 cbfa2t3,LOC102789151 other upstream 1186004 22548700 ~ 22601557 (-)

Expression


Co-expression Network