ercc5 (ercc5,LOC104958986)


Basic Information

Item Value
gene id ercc5
gene name ercc5,LOC104958986
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21381209 ~ 21390547 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039795981.1
CTCCCCGGACAGAAATAGTGTAACAGTCAACAATAAACGTTGAAAAGTGCCGCAGTTTGTGCCGTGCAGATTCTTATTTTACACTTTAGTGATTTCTGAGTTGATATGAAAACATGTTCAGATAAGTGAAGCAcgattcatttgtttttgtgtttcagttTTTAATCTTCACAGTATTTCGGTTGAGGTTTGGTTATAATGGGAGTGCATGGACTCTGGAGGCTGCTGGAGAGTACAGGGAAACCCATCAACCCTGAGACTCTGGAGGGAAAGGTCCTTGCTGTTGACATCAGTATATGGCTGAACCAGGCAGTGAAGGGGGTGAGGGACCGTGAAGGCAACAGTGTCCAGAACGCCCACCTCCTCACTCTCTTCAACCGCGTCTGTAAGCTGCTCTTCTTCCGCATCAGGCCAGTCTTTGTGTTTGATGGGGACGCACCACTGCTGAAGAAACAGACTCTGGCTCTGAGGaggcagaggaaagaggagttGAGCCGGGAGTCCAAACAGACCAATGAGAAACTTCTCAAAACATTCCTGAAGAGACAAGCGATCAAAGCTGCACTTGGAGACCGCAGTAAGGATCCTCTACCCAGCCTCTCCACTGTGAGGAGAGATGAGGTGGACGACATTTATGTTCTACCAGCCCTGCCAGCTGCAGAGGAGAAGGACCAAAACAGttctgaggaggaggaggaggaagagaaagagttAGAGGAGACAGACAACGGCCATCACATGTATCAGGGAGAATTGTATGAAGACCCCAACTCAGTGGACATTAACTCAGAGGAGTTTGCCAGCCTGCCTCCTGAAATGAAACATGAGATACTCAAAGACATGAAAGAGTTCTCCAAAAGACGTCGGACCATGTACCACAAACCCCCAGAGCATTCAGGAGACTTTTCACAGTACCAGCTTGCCGGCCTGCTGCAGAGGAACAAGCTGAACCAGCGACTGCAGGGTGTGGAGAAAGAGATGAGCCAGCAGAGCACCGGCAGCGCTCCACAGCTCTGCCAACTGGACGGGGACCAGCAGAGGCACAGCGTAGAGTCACACCGACTGGTTTCAGAAGACTATTCCCACTATATCCTTATTAAAGGCTCCAAGAAGAGCGAGACTGCCCCCGAGAGCCGACCCGCAACCGCAGCCTGGTCTGGGAGCTCCCTGACGGGCTGCGAAAGACGAGCAGCGGACAGACCTGAGCCACTGTGGCGTCCTGCTTGTGAGGACGAAGCAGAAGTGCAGGGTCCCTCCTCAAAAAACTCCAAACCGTCTGTCTTCAAACCGTCTCTGGGAGACACATCACCTCCCTCGCCTCGTACGCTCAAGGCGATCCAGGCTGCGATGAGCGACAGCTCAGACGAGGAGAAGGTGGACCGTGATAAGGACGGCCGTGTGTCCCCGCGCACCCTGCTGGCAATCCAACAAGCTCTAGCGGAGGAGGAAGATGACGCTGCCGTACACAGCACTCTAATCAGCAGCACATCCACCAAACTGCAGGCGAATATTCATCATCCTGGGCCACAAGTGGTCATCAGCAGCTCAGAGGAAGAGCCAAACCCTGGAAACGTGAGCCCTTTGCCTAATGAAAGATCCGATTGTAAGGGGAACCCAACAGGCCAAAGTTTACACGTGGAAGATGGTTTGTTTGTTAGTAGTTCTGAAGATGAGATGGAGAGTGTGATCGGTCAGAGAAATGAAGCACTTCGCTTTGCGGCGCAGCAACAAACTCCTGAGACAGAGATGAAGTCCGAAGAGGAGCTAAAGAAAAGACAGTTGACAGAGGATATACGGACGGGAAGTAGAGGACAGATGGAGAAACCAGAAGAGCTGGAGGGATTGAACACAAAGCCTCGGGCTGCTTCCAATCAAAACTCATCATCCATTAATCTCTCTGCTCAACTATTTGGAAAACCTCTCAGTGCAGAGACTGAAATTCATCCTGCGTTGTTAACGCAGAGGAGCAACGAGATGATTGAAGCTCAAGGGGAAAGGAATGGAGATGATGTGAAGTCGGAGGGCAGCGAGGAGAGCGAGTCAGAAGAGAGCTTCATCGAGGTGTCCGACGAAGAATTTCCAGAGGAGGATGCAGACGACTCCCTAGTAGTGACGGGAGAGAAAGGGTCTCCAGATGAGGCCCGTAGAGACGAGACCAAGCAGGAAGAAAACCCAGAGCAAGGTTTGACCGAGGCTCCAGCTGCTGCTTTGGAATTAGAGGAAGAAGACGACAAAAAGAGACGGACGGAAGAGAAAGCGCTAAAGGAGGGAACAGAGACCGAAGAATCCAGCTCAACTCCAGCAATCAATGAATGGGAACACTTTGATGTGGATGAGCTGGAGGCGCTGGAGAGCTCTCTGCAGGCGGAGCAGAGCAGCCTGAGGGAGCTGAAACAGCAGCAGGAGAGGATGGCGAACACGGTCACTGGACAGATGCACCTGGAAAGCCAGGAGCTGCTGCGGCTGTTTGGCGTGCCGTTCCTTGTGGCACCGATGGAAGCCGAGGCTCAGTGTGCAGCACTCGACCGCGCCGAACACACACACGGGACCATCACAGACGACTCAGACGTGTGGCTGTTTGGAGGGAGACACGTCTACAAGAACTTCTTTAGCCAGAACAAATATGTTGAACACTACCAGTACAGTGACCTACAGAGCCAACTGGgcCTGGACAGGACCAAACTGATAAACCTGGCTTATCTGCTTGGAAGTGACTACACAGAGGGCGTGCCGGGGGTCGGATATGTTACTGGCATGGAGATACTGAATGAGTTCCCAGGGCCGGGCTTGGAGCCACTCTCACAGTTcagTAAATGGTGGTTAGAGGCTCAGGAGAAAAAGCGTCTGGTAGCAGATCCTCGGGACTCGAAGGTTAAGAAGAAATTGAGGGACCTTAAACTGCATCCTGGGTTCCCTAACCCTGCGGTGGCTCAGGCTTACCTGCAACCTGCtgtggaccaatcagagagcttCTTCAGCTGGGGACGCCCACAACTCGACATGATCAAAGAATATCCTTGATCGActgatcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactcgcATTTCTATACCGATGGGGACCTTGACCTGAATACACACTCACAAGGTGGGGACTCGTGTCACCGTGGGGACCAAAATCAGGGTCCCCACGGGCAGACCCCTCTCAAAGCATAGAAAACAGCTTCCTGATATGCCCAGTATCAATAACTCCAATGTCCCCTTTGGGGGGGTTTTCatgagaaaaatgtgtgtgtgtgtaagacgcTGACGTCCTACTGGCAAACGGTGGTATTGCAAGTGTGTGAACTTTTCTGTGAACATGCGCCCCTCCTGGTAATAAATGGTATTGCAGCATAATGAAAATTTAA
>XM_039795983.1
CTCCCCGGACAGAAATAGTGTAACAGTCAACAATAAACGTTGAAAAGTGCCGCAGTTTGTGCCGTGCAGATTCTTATTTTACACTTTAGTGATTTCTGAGTTGATATGAAAACATGTTCAGATAAGTGAAGCAcgattcatttgtttttgtgtttcagttTTTAATCTTCACAGTATTTCGGTTGAGGTTTGGTTATAATGGGAGTGCATGGACTCTGGAGGCTGCTGGAGAGTACAGGGAAACCCATCAACCCTGAGACTCTGGAGGGAAAGGTCCTTGCTGTTGACATCAGTATATGGCTGAACCAGGCAGTGAAGGGGGTGAGGGACCGTGAAGGCAACAGTGTCCAGAACGCCCACCTCCTCACTCTCTTCAACCGCGTCTGTAAGCTGCTCTTCTTCCGCATCAGGCCAGTCTTTGTGTTTGATGGGGACGCACCACTGCTGAAGAAACAGACTCTGGCTCTGAGGaggcagaggaaagaggagttGAGCCGGGAGTCCAAACAGACCAATGAGAAACTTCTCAAAACATTCCTGAAGAGACAAGCGATCAAAGCTGCACTTGGAGACCGCAGTAAGGATCCTCTACCCAGCCTCTCCACTGTGAGGAGAGATGAGGTGGACGACATTTATGTTCTACCAGCCCTGCCAGCTGCAGAGGAGAAGGACCAAAACAGttctgaggaggaggaggaggaagagaaagagttAGAGGAGACAGACAACGGCCATCACATGTATCAGGGAGAATTGTATGAAGACCCCAACTCAGTGGACATTAACTCAGAGGAGTTTGCCAGCCTGCCTCCTGAAATGAAACATGAGATACTCAAAGACATGAAAGAGTTCTCCAAAAGACGTCGGACCATGTACCACAAACCCCCAGAGCATTCAGGAGACTTTTCACAGTACCAGCTTGCCGGCCTGCTGCAGAGGAACAAGCTGAACCAGCGACTGCAGGGTGTGGAGAAAGAGATGAGCCAGCAGAGCACCGGCAGCGCTCCACAGCTCTGCCAACTGGACGGGGACCAGCAGAGGCACAGCGTAGAGTCACACCGACTGGTTTCAGAAGACTATTCCCACTATATCCTTATTAAAGGCTCCAAGAAGAGCGAGACTGCCCCCGAGAGCCGACCCGCAACCGCAGCCTGGTCTGGGAGCTCCCTGACGGGCTGCGAAAGACGAGCAGCGGACAGACCTGAGCCACTGTGGCGTCCTGCTTGTGAGGACGAAGCAGAAGTGCAGGGTCCCTCCTCAAAAAACTCCAAACCGTCTGTCTTCAAACCGTCTCTGGGAGACACATCACCTCCCTCGCCTCGTACGCTCAAGGCGATCCAGGCTGCGATGAGCGACAGCTCAGACGAGGAGAAGGTGGACCGTGATAAGGACGGCCGTGTGTCCCCGCGCACCCTGCTGGCAATCCAACAAGCTCTAGCGGAGGAGGAAGATGACGCTGCCGTACACAGCACTCTAATCAGCAGCACATCCACCAAACTGCAGGCGAATATTCATCATCCTGGGCCACAAGTGGTCATCAGCAGCTCAGAGGAAGAGCCAAACCCTGGAAACGTGAGCCCTTTGCCTAATGAAAGATCCGATTGTAAGGGGAACCCAACAGGCCAAAGTTTACACGTGGAAGATGGTTTGTTTGTTAGTAGTTCTGAAGATGAGATGGAGAGTGTGATCGGTCAGAGAAATGAAGCACTTCGCTTTGCGGCGCAGCAACAAACTCCTGAGACAGAGATGAAGTCCGAAGAGGAGCTAAAGAAAAGACAGTTGACAGAGGATATACGGACGGGAAGTAGAGGACAGATGGAGAAACCAGAAGAGCTGGAGGGATTGAACACAAAGCCTCGGGCTGCTTCCAATCAAAACTCATCATCCATTAATCTCTCTGCTCAACTATTTGGAAAACCTCTCAGTGCAGAGACTGAAATTCATCCTGCGTTGTTAACGCAGAGGAGCAACGAGATGATTGAAGCTCAAGGGGAAAGGAATGGAGATGATGTGAAGTCGGAGGGCAGCGAGGAGAGCGAGTCAGAAGAGAGCTTCATCGAGGTGTCCGACGAAGAATTTCCAGAGGAGGATGCAGACGACTCCCTAGTAGTGACGGGAGAGAAAGGGTCTCCAGATGAGGCCCGTAGAGACGAGACCAAGCAGGAAGAAAACCCAGAGCAAGGTTTGACCGAGGCTCCAGCTGCTGCTTTGGAATTAGAGGAAGAAGACGACAAAAAGAGACGGACGGAAGAGAAAGCGCTAAAGGAGGGAACAGAGACCGAAGAATCCAGCTCAACTCCAGCAATCAATGAATGGGAACACTTTGATGTGGATGAGCTGGAGGCGCTGGAGAGCTCTCTGCAGGCGGAGCAGAGCAGCCTGAGGGAGCTGAAACAGCAGCAGGAGAGGATGGCGAACACGGTCACTGGACAGATGCACCTGGAAAGCCAGGAGCTGCTGCGGCTGTTTGGCGTGCCGTTCCTTGTGGCACCGATGGAAGCCGAGGCTCAGTGTGCAGCACTCGACCGCGCCGAACACACACACGGGACCATCACAGACGACTCAGACGTGTGGCTGTTTGGAGGGAGACACGTCTACAAGAACTTCTTTAGCCAGAACAAATATGTTGAACACTACCAGTACAGTGACCTACAGAGCCAACTGGATACCCTGACTTTTATGTGTCTGTGAAAGACAGgcCTGGACAGGACCAAACTGATAAACCTGGCTTATCTGCTTGGAAGTGACTACACAGAGGGCGTGCCGGGGGTCGGATATGTTACTGGCATGGAG

Function

symbol description
ercc5 Predicted to enable endodeoxyribonuclease activity and single-stranded DNA binding activity. Predicted to be involved in nucleotide-excision repair, DNA incision, 3'-to lesion. Predicted to act upstream of or within nucleotide-excision repair. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in cerebrooculofacioskeletal syndrome 3; melanoma; and xeroderma pigmentosum group G. Orthologous to human ERCC5 (ERCC excision repair 5, endonuclease).

NR:

description
PREDICTED: DNA repair protein complementing XP-G cells

GO: NA

KEGG:

id description
K10846 ERCC5, XPG, RAD2; DNA excision repair protein ERCC-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039795981.1 True 3396 mRNA 0.52 13 21381209 21390547
XM_039795983.1 False 2793 mRNA 0.52 13 21381209 21388794

Neighbor

gene id symbol gene type direction distance location
trmt10c NA coding upstream 7067 21372157 ~ 21374142 (+)
nkpd1 LOC104962748 coding upstream 29145 21331153 ~ 21352064 (+)
LOC120556481 NA coding upstream 93235 21286843 ~ 21287974 (+)
LOC120555780 diaph3 coding upstream 688235 20504098 ~ 20692974 (+)
LOC120555422 pcdh20 coding upstream 934436 20442399 ~ 20446773 (+)
LOC120556135 tmem255b coding downstream 43712 21434259 ~ 21453303 (+)
adprhl1 adprhl1,LOC102790835 coding downstream 214570 21605117 ~ 21613287 (+)
grtp1a grtp1 coding downstream 224154 21614701 ~ 21626517 (+)
tgfbrap1 tgfbrap1 coding downstream 260198 21650745 ~ 21667717 (+)
mrpl16 mrpl16,LOC102799737 coding downstream 277971 21668518 ~ 21674299 (+)
G28804 NA non-coding upstream 59584 21321312 ~ 21321625 (+)
LOC120555568 NA non-coding upstream 238019 21142725 ~ 21143190 (+)
G28792 NA non-coding upstream 307454 21073541 ~ 21073755 (+)
G28778 NA non-coding upstream 554732 20826224 ~ 20826477 (+)
G28777 NA non-coding upstream 583538 20797412 ~ 20797671 (+)
LOC120556583 NA non-coding downstream 19105 21409652 ~ 21413209 (+)
G28875 NA non-coding downstream 225169 21615716 ~ 21616158 (+)
G28880 cul4a non-coding downstream 245984 21636531 ~ 21638081 (+)
G28976 NA non-coding downstream 327941 21718488 ~ 21718824 (+)
G28990 NA non-coding downstream 496042 21886589 ~ 21889549 (+)
G28770 NA other upstream 620062 20711104 ~ 20761147 (+)
LOC120555792 pcdh9,LOC102784100 other upstream 1387255 19772119 ~ 19993954 (+)
ercc3 ercc3 other upstream 1860991 19512356 ~ 19520218 (+)
G28581 NA other upstream 1893676 19487246 ~ 19487533 (+)
LOC120555697 NA other upstream 2294145 19074308 ~ 19087064 (+)
G28826 NA other downstream 5666 21396213 ~ 21403450 (+)
grk1a grk1 other downstream 30563 21421110 ~ 21433147 (+)
tpp2 tpp2 other downstream 135045 21525592 ~ 21562814 (+)
dcun1d2b dcun1d2,LOC102792160 other downstream 205784 21596331 ~ 21603906 (+)
gpc5a gpc5,LOC103365231 other downstream 329487 21720034 ~ 21872025 (+)

Expression


Co-expression Network