LOC120556407 (atp4b,LOC102779491)


Basic Information

Item Value
gene id LOC120556407
gene name atp4b,LOC102779491
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21415207 ~ 21419254 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796002.1
ATGGCCGCCTTGAAGGAGAAGAGGACTTGTGGGCAACGATGTGAAGACTTTGGCCGTTTTGTCTGGAACTCCGACGATGGGACGTTAATGGGGAGAACACCAGAGAAATGGGTGTACATCAGTCTGTATTATGTGGCCTTCTACGTGGTGATGACGGCCCTCTTTTGTCTGGCCATCTGGACTCTCATGTACACCTTGGATCCGTACGCCCCGGACTACCAAGACCGGCTAAAATCTCCGGGGGTGATGGTGTGGCCTGACACTTACGGGGAGGAAAATGTTGAAATCTTCTACAACACATCTGATAAGGCCAGCGGGAAGAAGATGGCCAACATCCTTAATGAGTTCCTGAAGCCCTACAATGACACCAAGCAGCTTGAATGTAACAACTATAACTGCACAAAGGGAAAGTACTTCATCCAGAACACCTTCTCTGCCCCTCACCACACCAAGTGGTCATGCCCTTTCACGCAAAGCATGCTGGGAGCCTGCTCAGGACTTGAGGACCCAACCTTTGGCTACAACTGCAGCAGGCCTTGTGTCATCATTAAGATGAACAGGATCATCAACTTTTTGCCTACTAATCACACTGATCTTCCCGCATATGTCAACTGCACTGTACTGgaCGGACAAGAAAATGTGGCCAAAATCGAATATTTCCCTGACATGGGAATTATTGATCCCTCTTACTTCCCTTACTACGGAAAACTGGCACAGCCTACTTATGTCAACCCGTTGGTGGCCGTTCGGTTCAGCCTGGTCGGAGAGAAGAAAGCCAAGATCCAGTGCAGAGTGGTCTCCCACAAGATCAGCTACGAAAATTTCCATGACCCCTACGAGGGAAAAGTCATCTTCTCCCTCAAAGCATTGAAATAAGaagcagaagagaagagataCCCAGTAATCATGCAACACCTAACATGTCAGTATCAGAGATAGAGCAGGTGTTGTGTACAGAATAGTGACTACTA

Function

symbol description
atp4b Predicted to enable ATPase activator activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to be located in plasma membrane. Predicted to be part of sodium:potassium-exchanging ATPase complex. Implicated in atrophic gastritis; autoimmune gastritis; and stomach cancer.

NR:

description
PREDICTED: potassium-transporting ATPase subunit beta-like

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0005890 sodium cellular_component

KEGG:

id description
K01543 ATP4B; H+/K+-exchanging ATPase subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796002.1 True 971 mRNA 0.48 7 21415207 21419254

Neighbor

gene id symbol gene type direction distance location
blzf1 blzf1 coding downstream 34508 21374214 ~ 21380699 (-)
txnl4b txnl4b coding downstream 43249 21368912 ~ 21371958 (-)
LOC120556394 LOC104958904,LOC103352838,LOC105933796,LOC103378628,LOC107088303,LOC107687747 coding downstream 52511 21352531 ~ 21362696 (-)
pcdh17 LOC104926281,LOC104949434 coding downstream 424982 20920944 ~ 20990225 (-)
tdrd3 tdrd3 coding downstream 917482 20475627 ~ 20497725 (-)
gas6 gas6 coding upstream 35213 21454467 ~ 21472489 (-)
pros1 pros1 coding upstream 55680 21474934 ~ 21483612 (-)
rasa3 rasa3,LOC102778059 coding upstream 65428 21484682 ~ 21545256 (-)
LOC120555660 LOC103365134,LOC107103558,LOC103461963 coding upstream 143676 21562930 ~ 21568413 (-)
mettl21e LOC104958888,LOC103365143 coding upstream 149995 21569249 ~ 21576212 (-)
G28799 NA non-coding downstream 168641 21246351 ~ 21246566 (-)
G28797 NA non-coding downstream 193762 21221136 ~ 21221445 (-)
G28796 NA non-coding downstream 276830 21138049 ~ 21138377 (-)
G28793 NA non-coding downstream 341303 21073550 ~ 21073904 (-)
G28782 NA non-coding downstream 538921 20876032 ~ 20876286 (-)
G29022 NA non-coding upstream 724999 22144253 ~ 22144464 (-)
G29023 samd3 non-coding upstream 742372 22161626 ~ 22162235 (-)
G29090 NA non-coding upstream 948877 22368131 ~ 22368562 (-)
G29089 LOC103139356,LOC103461942,LOC106928198 non-coding upstream 950082 22369336 ~ 22371707 (-)
G29095 NA non-coding upstream 974091 22393345 ~ 22393560 (-)
LOC120555836 pcnp other downstream 2288796 19123541 ~ 19126411 (-)
LOC120555695 NA other downstream 2345211 19054091 ~ 19069996 (-)
G28345 NA other downstream 2695188 18719372 ~ 18720019 (-)
LOC120556268 btbd1 other downstream 2756548 18650029 ~ 18658659 (-)
G28269 mapk6 other downstream 2994708 18416069 ~ 18420499 (-)
LOC120555658 NA other upstream 160714 21579968 ~ 21583558 (-)
G28933 NA other upstream 161788 21581042 ~ 21583498 (-)
gpc6a LOC101477426,LOC100710496,LOC102798074,LOC103365236,LOC102217784 other upstream 467334 21886588 ~ 22051625 (-)
LOC120555944 LOC103365297,LOC100709700,LOC102795695,LOC102312860 other upstream 851616 22270870 ~ 22336817 (-)
cbfa2t3 cbfa2t3,LOC102789151 other upstream 1129446 22548700 ~ 22601557 (-)

Expression


Co-expression Network