rlbp1a (LOC104951141,LOC103353204)


Basic Information

Item Value
gene id rlbp1a
gene name LOC104951141,LOC103353204
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 17508105 ~ 17513164 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796020.1
TTGCATTATGTAGATCAGCCGCTCATTGTAATCCACTGTGTCATTTAACTCCTCCCCTCCTGATCCTCTCTCCTCTTGTTGTCCTCTCTGCCACTCCGTCTACTCCTCTCATCCTGTCTGCTTAAAGTTTGTGAAGCTGCTGTGAGACGCTGCAACCATGGCTGCTATTGGGTCTTACCGTATGGTGTCAGAGGAGGAGCAGGCCATGAGGTCTAAGCTGGAGAATTTGTCAGTGAAGGATCATGGGCCAGTGTTTGGGCCGTGCCACAAACTGCCTGGACACACTGtgcaaaagGCGAAGGATGAGCTGAGTGAGACAGATGAGAGGCGGGCGTCGACACTGAAGGACCTGCGAGTCATGATGAAGGAGAGAGCAGCGGAGGGAGACGATTTGGCCAAACTGGTGCTGGAGCACTTCGGGGACAAACCGGACTCTCTGATCCTGCGTTTCCTCAGAGCTCGCAAGTTTGAGGTTGTCAGAGCCCACGAGCTCATGAAGGGTTATGTGCGCTTCAGGAAGGAGTATCCCGAGCTGTTTGAGAATCTGACCCCAGAGGCAGTCCGCAGCACCATCGAGGCGGGTTACCCTGTGGTACTGCCCAGCAGGGACAAGTATGGCCACGTAGTCCTGCTCTTCAACATCGAGAACTGGGACCTGGAGGAGATCACATTCGATGAGATCTTAAGAGCGTACTGTGTGATCCTGGAGAAGTTGCTGGAGAATGAGGAAACCCAGATCAATGGCTTTGTCCTGATTGAGAATTTCAAGGGCTTCACCATGCAGCACGCCTCAGGAATAAAGCCGACCGAGCTCAAGAAGATGGTGGACATGATGCAGGACTCTTTCCCTGCGCGTTTCAAGGCGGTCCACGTTACTCACCAGCCCTGGTACTTCACCACCACATACAACGTGGTCAAACCCTTCATGAAGAGCAAGTTGCTGGAGAGGGTCTTTGTTCACGGCGACGAGCTGGACAACTACTTCAAAGAATTCGACGCAGACATCCTGCCAGCAGATTTTGATGGGAAAGCCTCTGTTGCAGACTGCCAGGCTATCGCCACCAAGCTTTTTGGCTCTGAAGACACTGCTCTCTGAAAGAACAGCCCCTCCCATTTCAAACCCAAGAGTTATAGTGTCCTTCACCCTAGATGCTTCTTTTGTGATCAGATCCGGTCTATTTTGAAGCTAGGTtgacattttgtattattatgcaGGCAGTTCCTATGAGCAAAAAGAAGTATCTAGAGTTAGGAGCAGGGAATGGGTTGCCAATGAGTAAATACATGGTGATATAaataggaaagaaaaaagatgtTTAGCTATTACAGAGAGAATAATTGATGTTTAATGTCTGTTACTTTACAGCGCTAACATTCATTGTTACTTAAGGAGCGGAGGGAGAATGAGAGAGTTGATAATGTAAGTCAGTTTGGTTTGGAGTTTTTCGCCTTAAAAATGAATTTCACATCATACAGAGCAGCTTTGTGCCTACAATCCTGTCAGTTGAATGAGAACATAAATGTTTCAGTCTCAGGGGTTTAGAAAGGTATGAAGATTGGAAAACTAATAACGGCTAAGCCAGCATTTGATAATTGTTTTAGGAGCCTTCTGATGCAGTGTCATGGAAACAGTTCTTTGTCTCAACAGCCTTGTTTGAGTTGTGACTCTCAGATGCCTGATTTACCACAAAGATCCATTCTGCAATTTGCACTGTATTGGGAAATTTtcaattaaattgtttttttttgtgtca

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007634 optokinetic behavior biological_process
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K19625 RLBP1; retinaldehyde-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796020.1 True 1754 mRNA 0.47 8 17508105 17513164

Neighbor

gene id symbol gene type direction distance location
slc39a1 LOC104951142,LOC103353202,LOC105936366 coding upstream 2999 17497420 ~ 17505106 (+)
LOC120556405 kif23,LOC104944434 coding upstream 781414 16701035 ~ 16726691 (+)
paqr5b paqr5 coding upstream 845376 16651817 ~ 16662729 (+)
glceb glce coding upstream 865258 16581385 ~ 16642847 (+)
coro2ba coro2b coding upstream 963314 16495835 ~ 16544791 (+)
LOC120556258 LOC103353205,LOC104951143 coding downstream 21663 17534827 ~ 17548420 (+)
LOC120556259 LOC104951145 coding downstream 36826 17549990 ~ 17556201 (+)
mibp2 LOC100693649,LOC103353206,LOC102204817 coding downstream 50567 17563731 ~ 17566207 (+)
slc30a4 slc30a4 coding downstream 66151 17579315 ~ 17595161 (+)
LOC120555872 LOC104951150,LOC103379093 coding downstream 96297 17609461 ~ 17624532 (+)
G27895 NA non-coding upstream 12332 17494748 ~ 17495773 (+)
G27884 NA non-coding upstream 42461 17381379 ~ 17465644 (+)
G27879 NA non-coding upstream 194015 17313888 ~ 17314090 (+)
G27877 NA non-coding upstream 213154 17292715 ~ 17294951 (+)
G27840 NA non-coding upstream 335634 17172255 ~ 17172471 (+)
G27977 NA non-coding downstream 312700 17825864 ~ 17826910 (+)
G28066 slc24a5,LOC102781271 non-coding downstream 358582 17871746 ~ 17876173 (+)
G28065 NA non-coding downstream 375597 17888761 ~ 17889217 (+)
G28083 NA non-coding downstream 405736 17918900 ~ 17919196 (+)
LOC120555993 NA non-coding downstream 491664 18004828 ~ 18181201 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 2021654 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 2061613 15441455 ~ 15446492 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 2454483 15047877 ~ 15053622 (+)
kcna4 kcna4 other upstream 2543043 14889390 ~ 14965062 (+)
bbox1 bbox1,LOC102798250 other upstream 2772929 14708562 ~ 14735176 (+)
LOC120555788 NA other downstream 211381 17724545 ~ 17743448 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other downstream 1048709 18561873 ~ 18575942 (+)
LOC120555697 NA other downstream 1561144 19074308 ~ 19087064 (+)
G28581 NA other downstream 1974082 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 1999192 19512356 ~ 19520218 (+)

Expression


Co-expression Network