LOC120556427 (cd81,LOC103358449,LOC103379030)


Basic Information

Item Value
gene id LOC120556427
gene name cd81,LOC103358449,LOC103379030
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 5764543 ~ 5804822 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796037.1
gtgagggagggaggagttGGGTGTTGCCTCTGTCTCCAAACTGAACTAGTCAGGATTCCCAGTCGAGACTCAGCCCCGTTATACCCGCCGCGACACCTGGCCTGCTGCCGCCGTCCTGTGAACTCTGCACCGAATACATTTGACTAACCTTAACCGACCACAATGGGAGTCGAAGGCTGCACCAAATGCATCAAGTACATGCTTTTCTTCTTCAACTTCATCTTCTGGcttGCAGGAGGTGTTATCCTGGGCGTGGCCCTGTGGTTGAGACACGACCCCAAGACCAGCAACCTGCTGGATTTGGAATTAGATGGAGCCCATGCCCCCAGCACCTTCTACATCAGTGTCCACATCCTGATCGCTGTCGGCGCGGTGATGATGGTGGTCGGTTTCCTCGGTTGCTATGGTGCCATCCAAGAGTCCCAGTGTCTATTGGGAACTTTCTTCGCCTGCCTGGTCATCCTGTTCGCCTGTGAAGTTGCAGCTGGAATCTGGGGCTTCATGCACAAAGACACAGTGTCGAAGGAGATGATCAACTACTACGACTCTGTGTACGAGAAGGCCGTGGCACAAAGCCTCACTGACAAGGACAAGAAGACGGCTGCCGCCTCCGTGCTCAAGGTCTTCCATGAGACGCTGAGCTGCTGCGGTAAAGGCCAGGGCACGTCCTTTTTCACACAGCTCACAGACGTACTGGGCCTGACTGAACTCTGCCCCAGCGCTGGAACTACAGTTGATTGCCACAAGAGGATCGATGAACTGTTCACAGATAAGATCTACCTGATTGGTATCGCCGCTCTGGTGGTTGCAGTTATTATGATCTTCGAGATGATCTTCAGCATGGTGTTGTGCTGCGGGATCCGCAACAGCCCGGTGTACTAAAGCGACGCTCGCCAAATGAAGGAAGGACGAcgtctccgtctccgtctctttctttttttcttttctttttcttttataagcAGGAACACGTCACATATATTGCTTGCTGGATTTAGTCAGCTCTTTGAGAAGACCAACGTAAAAACCATCCTCCAttgagcatttctttttttttttttttatattacaacTGTCAATTCTTTTGTTTCGTTAGTCACAGATGCTGTTATGCATATTTGACCAGTGCTATCCTAACCTGATATGTAGATATTATATCACACGGTCACACATGAATGCCATTCACCAGTTGGTGCTCTAATCCTTTAGTGACGCATTAGTTGTTTTACTGCTCCCTTTGCCTATGaacatgtatttttatttttatttttcactgtttgatgtataaactgtatataaatatatatattaacagtGCTTTATGACTGCCTAAGCATGAAAATTGTATTACAGTAGGTCTTTCTCCTGTATTCTTCCTGCACTCTCTGCTTGTTTGTCTTTGCTCTAGACTGAACCAGATGATGGCGTCCCCTGCCCCACAGACCATTGTCTCGGGTTTTCAcccacactgctgtgggatgtcTGTCGAACAAAAGGAATCTCAGTTAATCTCGGAAGCTGGAACCAAAGTCAAAGTGACCAGATGTCCGTCACGTTGGCCCCCATGGAgttattttgttggtttgtcttTGGCTGTTTGTCGTTCATCGTGTCTCCAACGCTGTCTTGAGCGCTCAGTTGTATAAAACCTATGAGGAAGGTGTTTCCCCTCAGTAGTGTTCTTTAAGATTTCCTTGGacaaaaatgaagttgcataacgTTGAATTAAGGACAGCCGcgacgattaatcgattagtggTCAACTGTCAAATTAATCCCCAACTCTTTTGATAATTCATCGTTTTGAGTCATTCTTTCATGAAAAAAGAAAGTCACAGTTCTCTGATCGCAGCGTCTTAAaagtgaatatgttctagttttcttctctcctctgtgacagtaaactgaacatctctgagttgtggacaaagcGAGagatttgaggacgtcatcttgggcttcaggaaacaacatttttcaccattttaaagaccaaacaactaattgagaaaataatcaacagctgCAGCCCTAGAAATAAGTAATGGTCTTATAAACCATACTTTATATTCatctaaaaacacacaaatgtctCTAGGCTATTTTGGCATAGTTCCACCACCTACATCTCGTATTTTGTCAAAAAATGTTCAATTGGGTGGTTAAAACGCAAAAAAGGCAGCACTATTCATTCTGAATATT

Function

symbol description
cd81 Enables cholesterol binding activity; signaling receptor binding activity; and virus receptor activity. Involved in several processes, including positive regulation of cellular metabolic process; positive regulation of immune response; and positive regulation of lymphocyte activation. Located in several cellular components, including basolateral plasma membrane; immunological synapse; and tetraspanin-enriched microdomain. Is integral component of plasma membrane. Part of basal plasma membrane. Implicated in common variable immunodeficiency.

NR:

description
PREDICTED: CD81 antigen-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06508 CD81, TAPA1, TSPAN28; CD81 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796037.1 True 2202 mRNA 0.45 8 5764543 5804822

Neighbor

gene id symbol gene type direction distance location
LOC120556426 LOC102314239,LOC100696141,LOC102210596,LOC101484460,LOC106959120,LOC106925763,LOC103462259 coding upstream 6294 5733290 ~ 5758249 (+)
LOC120555666 LOC104921432,LOC104957830,LOC107086796,LOC103149206,LOC102794467,LOC102201791,LOC101480916,LOC102288651 coding upstream 92520 5659480 ~ 5672023 (+)
zgc:162297 LOC103355515 coding upstream 110288 5642283 ~ 5654255 (+)
LOC120555425 NA coding upstream 1423255 4333065 ~ 4341288 (+)
LOC120555911 LOC102783822,LOC103462246,LOC106925612,LOC102294465 coding upstream 1510469 4163676 ~ 4254074 (+)
LOC120555999 NA coding downstream 11212 5816034 ~ 5854489 (+)
zgc:153993 NA coding downstream 64233 5869055 ~ 5884023 (+)
ano1a ano1 coding downstream 112734 5917556 ~ 6021420 (+)
fadd NA coding downstream 221613 6026435 ~ 6032154 (+)
trnal-uaa NA coding downstream 247065 6051887 ~ 6051969 (+)
G25611 NA non-coding upstream 88555 5674366 ~ 5675988 (+)
G25593 NA non-coding upstream 131513 5630664 ~ 5633030 (+)
G25567 NA non-coding upstream 873547 4890727 ~ 4890996 (+)
G25541 NA non-coding upstream 1082073 4682124 ~ 4682470 (+)
G25498 NA non-coding upstream 1317629 4446595 ~ 4446914 (+)
G25663 NA non-coding downstream 57837 5862659 ~ 5862867 (+)
G25673 NA non-coding downstream 87899 5892721 ~ 5893025 (+)
G25675 NA non-coding downstream 106407 5911229 ~ 5912453 (+)
G25709 NA non-coding downstream 230634 6035456 ~ 6035789 (+)
G25710 NA non-coding downstream 232037 6036859 ~ 6037969 (+)
tshz3b tshz3 other upstream 927258 4793815 ~ 4837285 (+)
G25512 NA other upstream 1188898 4570373 ~ 4575645 (+)
G25431 NA other upstream 1979001 3784933 ~ 3785542 (+)
mmp15b mmp15,LOC104948393 other upstream 2246457 3481297 ~ 3518086 (+)
adamts18 adamts18 other upstream 3452386 2240414 ~ 2312157 (+)
G25708 NA other downstream 229387 6034209 ~ 6035193 (+)
LOC120555541 NA other downstream 457588 6262410 ~ 6289776 (+)
G25743 NA other downstream 482226 6287048 ~ 6288077 (+)
rwdd3 rwdd3 other downstream 577748 6382570 ~ 6395706 (+)
LOC120556365 LOC102793592,LOC103366350,LOC101487888,LOC102307622,LOC100694289 other downstream 1189134 6993956 ~ 7005678 (+)

Expression


Co-expression Network