LOC120556430 (LOC101156874,LOC103142636,LOC107083861)


Basic Information

Item Value
gene id LOC120556430
gene name LOC101156874,LOC103142636,LOC107083861
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 39902668 ~ 39910451 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796041.1
TGCCACCGAGGAAGCACCCACAGACAGTGACGGACCCCGGCGGCCAGAGGGAGGACACGCAACCTGTTGACGTGAAACAAGTGTGAGCTCATGGCAGGACCCCAGCCCATCTGCATCTCCACATCAGAAGCTACAACACAGTAGAGGCTCAATTTACCATCTGCCCACTGGGGACCACAGGAGGCCCCTGACAGCTacttatttcacattttaagtgtttttacTACAACAAACCCAAAAGGAACTTGAACTTTTCGTCTGTCATTCCTGGAAATTGTACCTTGAAAATTGACAAACTCCAGAGAAGAGGACTAATAGCTTTGCAACAAAGTTTCTTATCATTCGCCATCACTCCAGGAGCCATTTTTGCCAAGAAATGATGGAGGATCACCTGTTGAAGCTCCCCATGATGTCGTCCTTGTCCCCCAGTGAGTCTTCTTTGAGCGGCGGGATGGACGACAGCAGAGGAGCCAAGAGTCCATCGCCGGGCAAAGCCCTGAGCCCGGCTCTGGTCTGCAAAGTGTGCGGAGACACCAGCAGCGGGAAACACTACGGCATCTACGCCTGCAACGGCTGCAGCGGCTTCTTCAAACGCAGCGTGAGGAGGAGGCTCATTTACAGGTGCCAGGCCGGTACAGGCATGTGTCCAGTGGACAAAGCTCATCGCAACCAGTGCCAGGCGTGTCGGCTGAAGAAGTGCCTGCAGGCGGGCATGAATAAGGACGCAGTACAGAACGAGCGGCAGCCCCGCAGCACAGCTCAGGTCCGCCTGGACTCCATCGACGTGGACCCTGAGAAGGAGCACCTGGCCACCACACGGGAGcccacctcctcttcctcttcctcatcttcctcctcctcttcctcctcctcctctgtcatcACGTGGCCCCACATTACCTCCTCCGTGTCCATCAACTCCTCCGCGGCCCCCCAGCGCTGCACCAGTCCCCAGAACAACCACCGCTTCATGGCCAGCCTCATGACGGCCGAGACCTGCGCCAAGCTGGAGCCCGAGGATGTTGACGAGAACATCGATGTGACGAGCAACGAGCCGGAGCGAGCGTCCTCGGAGTACCACATGGCTCTGTACCCGTCCAGCTCCGAAAACGTGTACGAGACGTCGGCgaggctgctcttcatgtcagTGAAGTGGGCCAAGAACCTGCCGGTGTTTTCCAACCTGCCCTTCAGAGACCAGGTGATCCTGCTGGAGGAGGCGTGGAGCGAGCTCTTCCTGCTCTGTGCCATCCAGTGGTCTCTGCCTCTGGACAGCTGCCCGCTGCTCTCTCTGCCAGACCTCTGCCCCGGCATGCAGGGGAAGACCAGCTACACCAGCCTGGACCTGCGCCTCCTACAGGAGGTCTTCAGCCGCTTCAAGGCCCTCGCCGTCGATCCCACTGAGTTTGCCTGCCTCAAGGCCATTGTACTCTTCAAGCCAGAGACCCGGGGTCTGAAAGATCCAGAACAAGTGGAGAACCTGCAGGATCAGTCTCAAGTGATGTTGGGACAACACATCCGCTCCCACTACCCCAGTCAACCAGCCAGGTTTGGAaagctgcttcttcttcttccctctctgcGTTTTGTGAATTCTGAGCGGATAGAGCTGCTGTTCTTCCACAGGACCATCGGAAACACTCCCATGGAGAAACTGTTGTGTGACATGTTCAAAAACTAAAAACCATCACCCACACACCCGTTCAGTCATCAATAATCTTCATGTATATTTGCTTTGTATTCCTGTATACATATCAGAGAATCTGCatgctgttatttttttaaaggccaCTTTATTATTGTTTGTTGGTTCCACGTCAGGTCATTCTAAAATCAAATTCAGTTCCTATCATCATGCTTGCTGTCTATTTGTATCATATTTAGACTTTGATTTATGTCAGAAGAGACTCCTGTTCACATTTCATCCTCTAGTGTATCATTATTTTTGGTGACATTTACAATGCAGATCTTTATTGTTTGGTGATAGATGGACTGTATATCCCTACTGTCATTAATGTTATATTCATGTTTTCATGCCTTGATAAAGTAAAAAACAATGCTTGAAAATGG
>XM_039796042.1
TGCCACCGAGGAAGCACCCACAGACAGTGACGGACCCCGGCGGCCAGAGGGAGGACACGCAACCTGTTGACGTGAAACAAGTGTGAGCTCATGGCAGGACCCCAGCCCATCTGCATCTCCACATCAGAAGCTACAACACAGTAGAGGCTCAATTTACCATCTGCCCACTGGGGACCACAGGAGGCCCCTGACAGCTacttatttcacattttaagtgtttttacTACAACAAACCCAAAAGGAACTTGAACTTTTCGTCTGTCATTCCTGGAAATTGTACCTTGAAAATTGACAAACTCCAGAGAAGAGGACTAATAGCTTTGCAACAAAGTTTCTTATCATTCGCCATCACTCCAGGAGCCATTTTTGCCAAGAAATGATGGAGGATCACCTGTTGAAGCTCCCCATGATGTCGTCCTTGTCCCCCAGTGAGTCTTCTTTGAGCGGCGGGATGGACGACAGCAGAGGAGCCAAGAGTCCATCGCCGGGCAAAGCCCTGAGCCCGGCTCTGGTCTGCAAAGTGTGCGGAGACACCAGCAGCGGGAAACACTACGGCATCTACGCCTGCAACGGCTGCAGCGGCTTCTTCAAACGCAGCGTGAGGAGGAGGCTCATTTACAGGTGCCAGGCCGGTACAGGCATGTGTCCAGTGGACAAAGCTCATCGCAACCAGTGCCAGGCGTGTCGGCTGAAGAAGTGCCTGCAGGCGGGCATGAATAAGGACGTACAGAACGAGCGGCAGCCCCGCAGCACAGCTCAGGTCCGCCTGGACTCCATCGACGTGGACCCTGAGAAGGAGCACCTGGCCACCACACGGGAGcccacctcctcttcctcttcctcatcttcctcctcctcttcctcctcctcctctgtcatcACGTGGCCCCACATTACCTCCTCCGTGTCCATCAACTCCTCCGCGGCCCCCCAGCGCTGCACCAGTCCCCAGAACAACCACCGCTTCATGGCCAGCCTCATGACGGCCGAGACCTGCGCCAAGCTGGAGCCCGAGGATGTTGACGAGAACATCGATGTGACGAGCAACGAGCCGGAGCGAGCGTCCTCGGAGTACCACATGGCTCTGTACCCGTCCAGCTCCGAAAACGTGTACGAGACGTCGGCgaggctgctcttcatgtcagTGAAGTGGGCCAAGAACCTGCCGGTGTTTTCCAACCTGCCCTTCAGAGACCAGGTGATCCTGCTGGAGGAGGCGTGGAGCGAGCTCTTCCTGCTCTGTGCCATCCAGTGGTCTCTGCCTCTGGACAGCTGCCCGCTGCTCTCTCTGCCAGACCTCTGCCCCGGCATGCAGGGGAAGACCAGCTACACCAGCCTGGACCTGCGCCTCCTACAGGAGGTCTTCAGCCGCTTCAAGGCCCTCGCCGTCGATCCCACTGAGTTTGCCTGCCTCAAGGCCATTGTACTCTTCAAGCCAGAGACCCGGGGTCTGAAAGATCCAGAACAAGTGGAGAACCTGCAGGATCAGTCTCAAGTGATGTTGGGACAACACATCCGCTCCCACTACCCCAGTCAACCAGCCAGGTTTGGAaagctgcttcttcttcttccctctctgcGTTTTGTGAATTCTGAGCGGATAGAGCTGCTGTTCTTCCACAGGACCATCGGAAACACTCCCATGGAGAAACTGTTGTGTGACATGTTCAAAAACTAAAAACCATCACCCACACACCCGTTCAGTCATCAATAATCTTCATGTATATTTGCTTTGTATTCCTGTATACATATCAGAGAATCTGCatgctgttatttttttaaaggccaCTTTATTATTGTTTGTTGGTTCCACGTCAGGTCATTCTAAAATCAAATTCAGTTCCTATCATCATGCTTGCTGTCTATTTGTATCATATTTAGACTTTGATTTATGTCAGAAGAGACTCCTGTTCACATTTCATCCTCTAGTGTATCATTATTTTTGGTGACATTTACAATGCAGATCTTTATTGTTTGGTGATAGATGGACTGTATATCCCTACTGTCATTAATGTTATATTCATGTTTTCATGCCTTGATAAAGTAAAAAACAATGCTTGAAAATGG

Function

NR:

description
photoreceptor-specific nuclear receptor-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08546 NR2E3, PNR; nuclear receptor subfamily 2 group E member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796041.1 True 2070 mRNA 0.52 8 39902668 39910451
XM_039796042.1 False 2067 mRNA 0.52 8 39902668 39910451

Neighbor

gene id symbol gene type direction distance location
LOC120555276 LOC100703294,LOC107381837,LOC103366994,LOC102295725,LOC102215676,LOC101474681 coding downstream 4151 39882936 ~ 39898517 (-)
mpped2a mpped2,LOC106524710,LOC102220360,LOC107083882,LOC100703837,LOC102192152,LOC107381839 coding downstream 108756 39721272 ~ 39793912 (-)
zdhhc13 zdhhc13 coding downstream 255762 39629922 ~ 39646906 (-)
nav2a nav2,LOC102790384 coding downstream 422206 39362422 ~ 39480462 (-)
htatip2 htatip2,LOC102791710 coding downstream 586878 39308042 ~ 39315790 (-)
slc22a18 slc22a18 coding upstream 20855 39931306 ~ 39938866 (-)
samd4a samd4a,LOC102311861 coding upstream 334478 40244929 ~ 40313805 (-)
LOC120556512 glg1,LOC100701703,LOC101472041,LOC108242135 coding upstream 475646 40386097 ~ 40416063 (-)
LOC120556376 NA coding upstream 688318 40598769 ~ 40631125 (-)
LOC120556133 NA coding upstream 737896 40648347 ~ 40652751 (-)
LOC120556195 NA non-coding downstream 249370 39647947 ~ 39653298 (-)
G32828 NA non-coding downstream 295347 39543171 ~ 39607321 (-)
G32751 NA non-coding downstream 660565 39241889 ~ 39242103 (-)
G32749 NA non-coding downstream 664650 39237807 ~ 39238018 (-)
G32742 NA non-coding downstream 774561 39127908 ~ 39128107 (-)
G32922 NA non-coding upstream 32962 39943413 ~ 39946579 (-)
G32923 NA non-coding upstream 33920 39944371 ~ 39947111 (-)
LOC120556076 NA non-coding upstream 64402 39974853 ~ 39985779 (-)
G32943 NA non-coding upstream 115683 40026134 ~ 40038460 (-)
G32952 NA non-coding upstream 137608 40048059 ~ 40049366 (-)
slc6a5 slc6a5 other downstream 666922 39205275 ~ 39235746 (-)
LOC120556344 lrrc49,LOC102795887 other downstream 2075397 37788725 ~ 37827271 (-)
ss18l2 ss18l2 other downstream 2649242 37231141 ~ 37253426 (-)
nod2 nod2 other downstream 3011364 36883651 ~ 36891304 (-)
cylda cyld other downstream 3019873 36859547 ~ 36882795 (-)
LOC120556511 LOC102208128,LOC101468289 other upstream 139173 40049624 ~ 40142048 (-)
LOC120556146 NA other upstream 653790 40564241 ~ 40589664 (-)
G33122 NA other upstream 738225 40648676 ~ 40662621 (-)
LOC120556513 NA other upstream 750913 40661364 ~ 40663657 (-)
sirt3 sirt3 other upstream 1847176 41757627 ~ 41764896 (-)

Expression


Co-expression Network