chst1 (chst1)


Basic Information

Item Value
gene id chst1
gene name chst1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13402324 ~ 13406615 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796044.1
GGGGTCTGGGGTGGTCCAGACAGTCGTTCCTTGTGTACCTCACACACTCTGCGCATCATTTAAGGGGAGCCCGGCTGTCGCTTTCCTTATCGCCTGGCTGCTTCATAATAACACAACCGCATCAACGTTACGCCACCACTTTTTTCTATCTTCCTCTCTGCGTCTGACGCCAATTAACCGTTCAACTTATACCGAGTCGCCCCACCGTTATATGGAAAATACAGGTCTCCTAGGCGCATTTATTCTCTCCTACCCGAGAGGAAGCGCACGGAGGAAAAACGTTTGAGGACTAAAGGAAATCAGCCGTGATTCATGGACGTACAACGCATCATGAGAATGCTACAACTACCAACAAGATGTTATTTTTAGAGTCGCCTTCACACTGTGCTTTGGAGTCAGAAGAGATACCCTGAtgcatcatttctttttttggacCTTACAAGTCTCGTGCATGGCTCCTGAAGTGATGATGAGAGATCCTGGCATGGACCGCTGTGTCTAAATGAAGTGGTTCAGCCATGCAATGTTCCTGGAAGGCAGTGATTCTGCTGGCCTTGGCCTCCATTGCCATCCAGTACACGGCCATCCGGACACTCACCTCCAAGCCTTTCCAGCTGTGCCCGTTGCCCAGCCCCCAGAACTGTGGTCTGGGCCAGGAGACAGAACCTCCCTTTGAGCGGGGAGCAGCAGGCGGTGGAAGCTGCGATGACTACCCTTACTTTACCATCAATGCCACACGTAAAACGCACATCCTGGTCCTGGCCACCACCCGTAGCGGCTCCTCCTTTGTTGGCCAGCTGCTCAACCAGCACCAGGATGTATTCTACCTGTTTGAGCCTCTTTATCATGTTCAGACCACACTGATTCCACGTTTGTCACACAGCCGCAATGCTGCAGACCGGCGTGTGATGCTGGGCGCCAGCCGAGACCTCCTGCGTAGCCTGTACGGTTGCGACCTCTATTTCCTGGAGAGTTATATCAAACCGACGCCCACAAACCACACCACAGATAAACTGTTCCGTCGTGGTGCCAGCCGAGCGTTGTGCCAGCAACCTGTATGTGATGCCTTTGGTCCTGCTGACATGAATGTTGAAGAAGGGGACTGTGTTAAGAAATGTGCGGCTCTGAACATGACCTTAGCAACGGAGGCATGCCGCGAGAAACGGCACGTGGCGATCAAAATTGTTCGAGTGCCGGAGATTGGAGATCTACGCGCGTTGGTGGAAGACCCACGGCTGAATATCAAAGTGATTCAACTCGTCAGAGACCCGCGTGGTATCCTGTCATCACGGATTGAGACATTCAGGGATACGTATCGTCTGTGGCGTATTTGGAGGGCCACAGGGCGAAGGCCCTATAATCTAGACTTGAGTCAGCTTACAGTTGTCTGTGAAGACTTTCTCAGTTCTGTTTCGACTGGTCTCAACCATCCCTATTGGCTGAAAGGGAAATACATGTTGGTTCGCTATGAGGATTTGGCTAGGAATCCGCTTCTCAAGACAAAGGAGATCTATGACTATCTGGGGCTGCCTATGGATAAAAACGTGGAAGACTGGATACATGCAAACACTCGGGGCAGCAATGAGCCCTCAGCAAAACATAAGTTTGGTACAGTGAGGGACTCAGCAGCTAACGCAGAGAGTTGGCGTTTGAAACTGTCTTATGACATGGTAGAATACACACAGACTGTTTGTCAAAAAGTACTTCACCAGCTGGGATACAAGGCTGTGAAATCAGTAGAGGAACTGAAAAATATGTCCCTCTCACTGGTACAGGACAAAACTTTTGTACCTTTTTTGTAACAAAGATAGTTCTAATgactatttttgatatatttataATTGTTGCCTTATTATTTCCttagtttgttagttttgtttctgtaattttgtttcttcaaatttgcactaaactttaaacattttgaatgcacCAAGGGGACTATGGATGATTCCCCAATGTTACAGAACAGCACACTTTAAACAAGGTCATTAAACAAGCTAATTTACAAACGTCTCATTATTTAGTTTTTCCATGACTAGAACCAAGACAAGACATTGTATGCAAGCCATTGTTTTAACGAAAGTAAAATGTTTCCCTTCAAAAACATGAGTTGGGAGGGGTTTTGGTAAAgcggagatgtttttttttagtgggATGGCAGATTTGGACTGTAGAAGCCCTACTGTGCAATAAATAGTGAATGTCGCAGTCAACCTTTACCACTATGCCATTTCTGTCCATGTGGGAAGAGAAGAGATGCTTCTGACAGATCCCACGCTTGCAATGGATAATTGCAGACAATTAATAGGCTCTCAAGTTAAAGGGACAGATTCCCACTTGAGGTCAGTTGAGTGTTTCATCAGAGGATTTACAACCATCTGTGATAGACAAACACACTAATGAGAGATAATGTCAAAATCTTCATTACTGTAAATTTTTTCCAGATGACTACAGCATTAGAAACATGGCTGTAAACAATACGCCCGTCCGATTTCAAGTAGACACTGAAGCTTCCTGAAAAGGAACTGTATttgttagttttattttttgttcatttatgCAAATTATTCTATTTAGAGTGTGAAATTGACAAATGACCTTTTCTGTCttcaattaaaaatgtttatgCTACA

Function

symbol description
chst1 Predicted to enable N-acetylglucosamine 6-O-sulfotransferase activity and keratan sulfotransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process and keratan sulfate metabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in trans-Golgi network. Is expressed in central nervous system; otic placode; retina; and retinal inner nuclear layer. Orthologous to human CHST1 (carbohydrate sulfotransferase 1).

NR:

description
carbohydrate sulfotransferase 1

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K01022 CHST1; keratan sulfate 6-sulfotransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796044.1 True 2636 mRNA 0.45 4 13402324 13406615

Neighbor

gene id symbol gene type direction distance location
LOC120555522 NA coding downstream 108063 13285241 ~ 13294261 (-)
LOC120556590 NA coding downstream 113060 13289210 ~ 13289264 (-)
pdcd7 NA coding downstream 153908 13240686 ~ 13248416 (-)
ubap1lb ubap1l,LOC107685210,LOC106932412,LOC103156499,LOC105938593 coding downstream 164072 13208329 ~ 13238252 (-)
rasl12 NA coding downstream 203688 13188414 ~ 13198636 (-)
LOC120555520 NA coding upstream 316978 13723593 ~ 13727470 (-)
hsd17b12b hsd17b12,LOC103367509,LOC108234813,LOC106951467,LOC102212771 coding upstream 561099 13967714 ~ 13995315 (-)
ttc17 ttc17,LOC103361721 coding upstream 610937 14017552 ~ 14048294 (-)
trpm5 trpm5 coding upstream 655421 14062036 ~ 14090460 (-)
kcnq1.1 kcnq1,LOC101467915,LOC102292488,LOC102797067,LOC100697082 coding upstream 694514 14101129 ~ 14153448 (-)
G27178 NA non-coding downstream 2950 13399003 ~ 13399374 (-)
LOC120555270 NA non-coding downstream 11183 13379030 ~ 13391141 (-)
G27135 NA non-coding downstream 152184 13249904 ~ 13250140 (-)
G27133 NA non-coding downstream 153161 13248744 ~ 13249163 (-)
G27108 NA non-coding downstream 230894 13170457 ~ 13171430 (-)
G27189 NA non-coding upstream 213948 13620563 ~ 13620851 (-)
G27196 NA non-coding upstream 269357 13675972 ~ 13676503 (-)
G27204 NA non-coding upstream 281226 13687841 ~ 13688228 (-)
G27205 NA non-coding upstream 282667 13689282 ~ 13689597 (-)
G27206 NA non-coding upstream 287130 13693745 ~ 13694248 (-)
G27075 LOC104939823,LOC100707594 other downstream 306558 13069996 ~ 13095766 (-)
G26924 LOC108281047 other downstream 1097500 12304539 ~ 12304824 (-)
G26891 NA other downstream 1440552 11960701 ~ 11961772 (-)
LOC120555651 NA other downstream 1733055 11643231 ~ 11669269 (-)
mtfmt mtfmt,LOC102776665,LOC102776373 other downstream 1892024 11476506 ~ 11510300 (-)
G27321 NA other upstream 1063143 14469758 ~ 14470345 (-)
LOC120556476 NA other upstream 1171412 14578027 ~ 14580011 (-)
G27420 NA other upstream 1436098 14842713 ~ 14843905 (-)
cfap70 LOC103368539,LOC102222702,LOC102790175,LOC102296598,LOC102204478,LOC104922799 other upstream 1644047 15050662 ~ 15078830 (-)
LOC120556162 znf609 other upstream 2664954 16071569 ~ 16159882 (-)

Expression


Co-expression Network