LOC120556440 (LOC104962514,LOC103369193,LOC107381980,LOC106931206)


Basic Information

Item Value
gene id LOC120556440
gene name LOC104962514,LOC103369193,LOC107381980,LOC106931206
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1378010 ~ 1385075 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796055.1
AAAGCATCATCAAAATCATCATCCATCACCTCCTCtctcggtgtgtttgtgtgtgtgtctctctctctgttccctcCGTTGTCTTTTTAATGTAGCCTAACTTCTGACTGATCGGGAGAGCAGGGAGCGTCTGGAAAGCCTGGTCCATCCCTGATGAAGGATCTGATCGCACGGTGTTCTGTTTAAAGCTGGACACACATGCAGGACAGAAAGGATCAGATTGTATATTTTTGAGGATAACGTTGCATTCCTCCGTGGATTTGGGCTCAGTGttgtctgtatttattgttcccCTTCTGTGGATGTTATGCATTATGTCGGTCTGAATGAATCTTTCTTTTTTGGATTTCCACCGCGCCGAAGCTATTTCTGGGGGACCATTCTTCACGTGAAGTCGCGCGATATATTTAGCATAAATTGCCGTTATCTTATGAGTTCTAGTCATATTTTCAGGCGTAGGCTAACTTGTATTCGATTTTGTCAAACAATGCCGCAGTTTTCTTGAATGTGTTAGCAATACATGCAGACAAATAGGCTAGTGTGTTAATTATCGCGGACAAATAGGAAAGTTGGGCGCTCAAAGTTTTGGAGACTATCGATATGGCTATGGTGGCGTGGAGAAACCCCGAGGGCGTCGGGGACACTCAGGGGACCCTCTCCTCATCGGTGTCCCAGGTCGCACCTCTGTCTCTGCCTGGGGACCTGACGGGACACATGAACCCGGCGTCTTCTCTGGAAATACcgccggcagcagcagcagcagcacccccGGGCGCACCGCCGCCCAATCCATCCAGCAGCACCACCACGAGCACCACcatcaataacaacaacacctcctcttcctcgtcctCTTCCTCGTCCATGGACAAACAGCAGAGCCAGCAGATCGAGTGCATCGTGTGCGGGGATAAATCCAGCGGGAAGCACTACGGACAGTTCACATGTGAAGGATGTAAGAGCTTCTTTAAACGCAGCGTCAGGAGAAACCTGTCCTACACCTGCAGGGCCAACAGGAACTGTCCCGTTGACCAGCACCACCGCAACCAGTGCCAGTACTGTCGCCTCAAGAAATGCCTCAAAGTCGGCATGAGGAGGGAAGGTACGGGCAGGCGTCCTCCTGTTGTTGCTCTCGCTGTCCAGAGAGGCAGACTTCCGACCCAGTCTTATCACGGCCAGTTTGCTCTGACAAACGGAGACCCTCTCCAGTGTCATTCCTATCTATCGGGATACATCTCTCTCCTGCTGCGGGCCGAGCCCTACCCGACCTCCAGGTTCGGCTCTCAGTGCCTGCAGAGCAACAATATCATGGGCATCGAGAACATCTGCGAGCTAGCGGCCCGGATGCTCTTCAGCGCCGTGGAATGGGCTCGCAACATCCCTTTCTTCCCGGACCTGCAGGTAACGGACCAGGTGGCCCTGCTCCGCCTCACCTGGAGCGAACTGTTCGTCCTGAACGCCGCCCAGTGCTCCATGCCCGTCCACGTCGCCCCGCTGCTGGCCGCAGCCGGCCTCCATGCCTCCCCGATGTCCGCGGACCGGGTGGTGGCCTTCATGGACCACATCCGGGTCTTCCAGGAGCAGGTGGAGAAGCTCAAGGTGCTGCACGTAGATTCAGCAGAGTACAGCTGCATCAAGGCCATCGTGCTGTTCACCACAGATGCTTGTGGTCTGTCAGACGTGAGCCATGTGGAGGGTCTGCAGGAGAAATCGCAGTGTGCATTAGAGGAGTATGTGAGGAGCCAATATCCCAACCAGCCTAACAGGTTTGGGAAGCTGCTGCTCCGCTTGCCTTCCCTCCGCACCGTCTCTTCTTCTGTCATAGAGCAGCTTTTCTTCGTCCGTCTGGTGGGGAAAACCCCCATAGAAACTCTGATAAGGGACATGCTGCTGTCGGGAAGCAGCTTCAACTGGCCTTACATGCCTATTCAGTAGAATGAAAAGCTACAGGTGTGCTTCTATAAGGTCAGGAAAGGTCCCATACCTCAAATCAAGTCATTTCAGTGTGGCGTAAAATTGCTGTTGTTTCAAACAAGGGAAGAAAACTGCCAGTGGAATGAGTTACAGTAATAACAGGCATTTCCaatatacacatttttttttataccatcTGCCATTTCCTTGATACCAGAGGAGAGATCTGCCTAATGCTGCATGGTGTCCCGATGTGTCTATAGAAATGTCCCTGAAATAAATTAACCATTTTGCATACGTTAAAAGATTTCACCCCACTGGCAGAATTTTTTTACTTGTTCAAAGAGAAACAATATTTGAAATGACTATGGTTATGATGGACATTTTTTGCAGTGTGGTGACCACCCACAGTCTATGGTTTTTGGGATAACAAACAATATTTATTGGACCCTGTATGTATTTATCGTGCTTGTAAATTATgttttggctcttttttttaaaatgttttacgtaTTTTTGCCCCGGCAAGTGAAAAAACAGCAGGGATTGTCTCGTCTCattgtccttttttttcttttttctttcttttcataccTTCCAGACATGGCACTTTGGACTAAAGGGACATTTCAGAAAGATTTAACACAGGTGTTTGAAACCCCACATCATCTGACTTTAACCTATTTTATCATTTGTGTACAGACCGGATGGTGAGATGAATGCTCTGTTTTAGTTACTTTGGAGTCTTATTCTATTTGCATTATCGACATACTAAGAATGAAAGGAAAAAGAGCAAAAAGATATTTGGAAAACACACTTCTCATGGTCATGCAATGTGTTACTCCTTTCATAGGTAATGTCATTACTTTCTTACTTTAGTATTTTCTTAAATATTTTAGTTCATAATTCCTGCAGATGTAAATATTTCCTCTTGCCAAAGTGCTTAAtttccactcattttttttcatttgaatgatcaGATAATCCAGAACATCATGTTTATTTCTCATCAAATTAGTAAATTTTGCTGCTCAtcgttatttttcttttaaactgaGAGATGATGATAAGGCTAATTACGGGCAAAAATAGATAAAGGGATAAAGCTGACTGTACAGTAATCTGATATTTTCGTATTTGGAGGGGTGAAGTCAAACGTCGTATTCTTTTGACTGGTAACTTGTTACAGGGAAAAATAATGACATTACCTTAGTGGATTGATGATGAATGCATTACCAAACACTTGGGATTCCTCCATGTTTCCAGGTCTTTTACACTGACTGTCTCAGAGAGATTTCAAGAGCACTAAGCCTGATGTATACTGTACTACAGTCTCTTAATGGGATACATGAACTGTACACAACTTCCCCAACTCAAGTAACAAATCTGTTTCATTATTATTCATGCATTTATGAGCCCAGGCCACTTTCTGGCACACTAGACCACTGCAGGGTATTGCTGGACTGAAAGTTCGTGtatcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgta
>XM_039796056.1
AAAGCATCATCAAAATCATCATCCATCACCTCCTCtctcggtgtgtttgtgtgtgtgtctctctctctgttccctcCGTTGTCTTTTTAATGTAGCCTAACTTCTGACTGATCGGGAGAGCAGGGAGCGTCTGGAAAGCCTGGTCCATCCCTGATGAAGGATCTGATCGCACGGTGTTCTGTTTAAAGCTGGACACACATGCAGGACAGAAAGGATCAGATTGTATATTTTTGAGGATAACGTTGCATTCCTCCGTGGATTTGGGCTCAGTGttgtctgtatttattgttcccCTTCTGTGGATGTTATGCATTATGTCGGTCTGAATGAATCTTTCTTTTTTGGATTTCCACCGCGCCGAAGCTATTTCTGGGGGACCATTCTTCACGTGAAGTCGCGCGATATATTTAGCATAAATTGCCGTTATCTTATGAGTTCTAGTCATATTTTCAGGCGTAGGCTAACTTGTATTCGATTTTGTCAAACAATGCCGCAGTTTTCTTGAATGTGTTAGCAATACATGCAGACAAATAGGCTAGTGTGTTAATTATCGCGGACAAATAGGAAAGTTGGGCGCTCAAAGTTTTGGAGACTATCGATATGGCTATGGTGGCGTGGAGAAACCCCGAGGGCGTCGGGGACACTCAGGGGACCCTCTCCTCATCGGTGTCCCAGGTCGCACCTCTGTCTCTGCCTGGGGACCTGACGGGACACATGAACCCGGCGTCTTCTCTGGAAATACcgccggcagcagcagcagcagcacccccGGGCGCACCGCCGCCCAATCCATCCAGCAGCACCACCACGAGCACCACcatcaataacaacaacacctcctcttcctcgtcctCTTCCTCGTCCATGGACAAACAGCAGAGCCAGCAGATCGAGTGCATCGTGTGCGGGGATAAATCCAGCGGGAAGCACTACGGACAGTTCACATGTGAAGGATGTAAGAGCTTCTTTAAACGCAGCGTCAGGAGAAACCTGTCCTACACCTGCAGGGCCAACAGGAACTGTCCCGTTGACCAGCACCACCGCAACCAGTGCCAGTACTGTCGCCTCAAGAAATGCCTCAAAGTCGGCATGAGGAGGGAAGCTGTCCAGAGAGGCAGACTTCCGACCCAGTCTTATCACGGCCAGTTTGCTCTGACAAACGGAGACCCTCTCCAGTGTCATTCCTATCTATCGGGATACATCTCTCTCCTGCTGCGGGCCGAGCCCTACCCGACCTCCAGGTTCGGCTCTCAGTGCCTGCAGAGCAACAATATCATGGGCATCGAGAACATCTGCGAGCTAGCGGCCCGGATGCTCTTCAGCGCCGTGGAATGGGCTCGCAACATCCCTTTCTTCCCGGACCTGCAGGTAACGGACCAGGTGGCCCTGCTCCGCCTCACCTGGAGCGAACTGTTCGTCCTGAACGCCGCCCAGTGCTCCATGCCCGTCCACGTCGCCCCGCTGCTGGCCGCAGCCGGCCTCCATGCCTCCCCGATGTCCGCGGACCGGGTGGTGGCCTTCATGGACCACATCCGGGTCTTCCAGGAGCAGGTGGAGAAGCTCAAGGTGCTGCACGTAGATTCAGCAGAGTACAGCTGCATCAAGGCCATCGTGCTGTTCACCACAGATGCTTGTGGTCTGTCAGACGTGAGCCATGTGGAGGGTCTGCAGGAGAAATCGCAGTGTGCATTAGAGGAGTATGTGAGGAGCCAATATCCCAACCAGCCTAACAGGTTTGGGAAGCTGCTGCTCCGCTTGCCTTCCCTCCGCACCGTCTCTTCTTCTGTCATAGAGCAGCTTTTCTTCGTCCGTCTGGTGGGGAAAACCCCCATAGAAACTCTGATAAGGGACATGCTGCTGTCGGGAAGCAGCTTCAACTGGCCTTACATGCCTATTCAGTAGAATGAAAAGCTACAGGTGTGCTTCTATAAGGTCAGGAAAGGTCCCATACCTCAAATCAAGTCATTTCAGTGTGGCGTAAAATTGCTGTTGTTTCAAACAAGGGAAGAAAACTGCCAGTGGAATGAGTTACAGTAATAACAGGCATTTCCaatatacacatttttttttataccatcTGCCATTTCCTTGATACCAGAGGAGAGATCTGCCTAATGCTGCATGGTGTCCCGATGTGTCTATAGAAATGTCCCTGAAATAAATTAACCATTTTGCATACGTTAAAAGATTTCACCCCACTGGCAGAATTTTTTTACTTGTTCAAAGAGAAACAATATTTGAAATGACTATGGTTATGATGGACATTTTTTGCAGTGTGGTGACCACCCACAGTCTATGGTTTTTGGGATAACAAACAATATTTATTGGACCCTGTATGTATTTATCGTGCTTGTAAATTATgttttggctcttttttttaaaatgttttacgtaTTTTTGCCCCGGCAAGTGAAAAAACAGCAGGGATTGTCTCGTCTCattgtccttttttttcttttttctttcttttcataccTTCCAGACATGGCACTTTGGACTAAAGGGACATTTCAGAAAGATTTAACACAGGTGTTTGAAACCCCACATCATCTGACTTTAACCTATTTTATCATTTGTGTACAGACCGGATGGTGAGATGAATGCTCTGTTTTAGTTACTTTGGAGTCTTATTCTATTTGCATTATCGACATACTAAGAATGAAAGGAAAAAGAGCAAAAAGATATTTGGAAAACACACTTCTCATGGTCATGCAATGTGTTACTCCTTTCATAGGTAATGTCATTACTTTCTTACTTTAGTATTTTCTTAAATATTTTAGTTCATAATTCCTGCAGATGTAAATATTTCCTCTTGCCAAAGTGCTTAAtttccactcattttttttcatttgaatgatcaGATAATCCAGAACATCATGTTTATTTCTCATCAAATTAGTAAATTTTGCTGCTCAtcgttatttttcttttaaactgaGAGATGATGATAAGGCTAATTACGGGCAAAAATAGATAAAGGGATAAAGCTGACTGTACAGTAATCTGATATTTTCGTATTTGGAGGGGTGAAGTCAAACGTCGTATTCTTTTGACTGGTAACTTGTTACAGGGAAAAATAATGACATTACCTTAGTGGATTGATGATGAATGCATTACCAAACACTTGGGATTCCTCCATGTTTCCAGGTCTTTTACACTGACTGTCTCAGAGAGATTTCAAGAGCACTAAGCCTGATGTATACTGTACTACAGTCTCTTAATGGGATACATGAACTGTACACAACTTCCCCAACTCAAGTAACAAATCTGTTTCATTATTATTCATGCATTTATGAGCCCAGGCCACTTTCTGGCACACTAGACCACTGCAGGGTATTGCTGGACTGAAAGTTCGTGtatcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgta

Function

NR:

description
PREDICTED: COUP transcription factor 2-like

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08548 NR2F2, TFCOUP2; COUP transcription factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796055.1 True 3459 mRNA 0.46 3 1378010 1385075
XM_039796056.1 False 3426 mRNA 0.46 3 1378010 1385075

Neighbor

gene id symbol gene type direction distance location
LOC120556244 LOC103369184,LOC102786692,LOC100700148,LOC101476567,LOC102297530 coding upstream 13284 1312448 ~ 1364726 (+)
LOC120555491 NA coding upstream 66250 1308822 ~ 1311760 (+)
LOC120555381 LOC102205592,LOC102787001,LOC102297232,LOC101476278,LOC100534518 coding upstream 109007 1262950 ~ 1269003 (+)
LOC120555232 NA coding upstream 126109 1246885 ~ 1251901 (+)
glo1 glo1,LOC103369175,LOC104919745 coding upstream 137553 1228417 ~ 1240457 (+)
zgc:165481 LOC103369239,LOC108241605,LOC103379234 coding downstream 289666 1674741 ~ 1698359 (+)
slc7a10a LOC104919817,LOC103369274 coding downstream 404878 1789953 ~ 1817994 (+)
phkb phkb coding downstream 654388 2039463 ~ 2182754 (+)
LOC120555875 LOC103368003,LOC100711702 coding downstream 1838794 3223869 ~ 3236019 (+)
adgrg1 NA coding downstream 1865533 3250608 ~ 3273178 (+)
G24991 NA non-coding upstream 75058 1302719 ~ 1302952 (+)
G24984 NA non-coding upstream 119194 1258519 ~ 1258816 (+)
G24972 NA non-coding upstream 123419 1253197 ~ 1254591 (+)
G24926 hmbox1,LOC104919714 non-coding upstream 192783 1184725 ~ 1185227 (+)
G24920 LOC104919714 non-coding upstream 199829 1175326 ~ 1178181 (+)
G25011 NA non-coding downstream 973 1386048 ~ 1386264 (+)
G25008 NA non-coding downstream 28020 1413095 ~ 1415747 (+)
G25144 NA non-coding downstream 384207 1769282 ~ 1774440 (+)
G25203 NA non-coding downstream 797731 2182806 ~ 2183770 (+)
G25220 NA non-coding downstream 830172 2215247 ~ 2215548 (+)
mapk8ip1b mapk8ip1,LOC102793463 other upstream 1293584 11843 ~ 84426 (+)
G25173 dnaja2,LOC106524269 other downstream 454258 1839333 ~ 1842811 (+)
G25204 NA other downstream 696883 2081958 ~ 2083319 (+)
adamts18 adamts18 other downstream 855339 2240414 ~ 2312157 (+)
mmp15b mmp15,LOC104948393 other downstream 2096222 3481297 ~ 3518086 (+)
G25431 NA other downstream 2399858 3784933 ~ 3785542 (+)

Expression


Co-expression Network