smad6a (LOC104930524,LOC103353200,LOC104949844,LOC100698095,LOC102202245,LOC101484891)


Basic Information

Item Value
gene id smad6a
gene name LOC104930524,LOC103353200,LOC104949844,LOC100698095,LOC102202245,LOC101484891
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 17456560 ~ 17475867 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796074.1
tgtgcgtccaaaAAAGACTTGCAGGGGAGTGGAGAGTGGAGTAATTCCAGCTCTCTTTAAAACAACTTCTCAGCACGGAATCCGTCCCGGAGTATGGCACTGGAGTCCCCGACCATCTCTGCTTTACCCCGGGACTCTGCAGCGGGATTATTGCTTCCACCAGCGACAGAAATCATCGCAGTTTCAGTGTTGTGAGGATCTACATCGGGTGAAGGAAGGATTTTACGGTTCAAGGGCTTCACTAAACTCAAGGAGAAACTCTGGAAACCTTGTGGATTAATGTTTCTGATGCTCTTTTTGTTCATGTAAACTGACCCTGCTCCTCGAGTGGACTAACTATGGTTTGTGGATGGTGTGCGGGGTCTCCAGAGTGTTGCAGTGTGGAAGGCTTTGAGAGAGGGCTTGCAAAAGTTGTGGCTTAATTGAGTTGGCAACAGCAGGTCACTAAGCAGTGACTGTGTGTTAGCCTTCTCCTTCTTTAGACGTGTAGGGATGTTTAACGCAACGCATGattgaatattactttctaatGCTGCGGGAGAGCCAGAACACGGTGACCACCGGCTGCGCATGTTGTGCGCACCGTGCACAAACCCCCGGACTTGCGCGACGAGTGTAAATCGATGTGGCATCTCCCGAGACCCGGACGGGGCCGACAGGACACATCCAAAACTGTCTAGGTTGTCGTATGTTCAAGTCGAAACGCTCAGGTCTTGTACGGCGACTCTGGAGAAGCCGTCTGGTCACCGAGAGCGACGGGCGGGATGGAAGCAGACGAGGTGACGGAGGACGGAACGGTCCGTGTGGCAGACACCCAGGAAAGCTCCACAGACATGAGCAGCGGTCGGTGACACACACTGACCCGGCTCCGGGACACACGGCGGAGGCTGGAGACCTGATTGAGAGCgcggagagggaggaagaggagcagccTGACGATGACCGGGATGCCATGTGCGTCCCGGTGCACAGAGGCTCCCGGCGGGGACAGGAGGGCGACAGTAGGACGGTGACGTGTTGTTTGTTTGGGGAATGGGATGTCAGACCTCGGAGCCCTTATTGGGCCCCGAGAAAAGACGGAGGGGGCGCTTGTCAGTGCGCACCGAGGCACGCAGGGCTGGAGGAGGAACTCGCGGGCACTGCTCATGCTTTTTTGAAAAGACTCAAGGAGAGATCTCTGGATACTTTGGTGAAGGCTGTAGAGACCAAAGGAGGGATACCCAGCGAGTGTGTCATGGTGCCGAGCACTGAGCTGCGGCTCGGTGCTCATCACATCTCTCCACAGTATCTCCTGTGTAAGGTGTACCGCTGGAGCGACCTGCCGCTCTCAGCCCGGCTCAAAACGCTGTGGCACTGCCAGAGCTTCGGCGCAGTGGACGGCGCAAAGGTGTGCTGCAACCCCTATCACTACAGCCGGTTATGTGGGCCTGAATCACCTCCTCCCCCATACTCTCTGTCCCATTCAGATGAACACAAGCCACTGGACTCAACTCTGTCTAACACTGAAACTgtgccccccctctcctccaaTCCGCCTCACATTACGCCGAGAGACTACACAGACACTGGTACCTCCCTCGGCTCCTCGACTTCCGGCGGACACCGCTCGTACTGGTGCAGTGTTGCCTACTGGGAGCAGCGCACACGCGTGGGTCGCCTTTATCCAGCCTACGAGCCCTCGCTCAACATCTTCTATGACCTACCTCAGGGCACAGGCCTCTGCCTGGGCCAGCTCCACGCCAACGCCTACCACAGCCGCCGTGACGACCCTGGCAGCCACGGCACATCGGGTCTTCACGGACACCACAGCCATGGAAGTGGaggtaacagcagcagcagcgtgcaACAGATGCGCAGTAAAATCGGCTACGGCATCGTGCTGAGCCGGGAGCCGGACGGAGTGTGGCTGTACAACCGCAGCCAGCACCCGGTGTTTGTCCACTCACCCACTCTGGACCCACCCAGGGCTCGGGGGCTGAGTGTGAAGAGGGTGATGCCCGGCTTCTCCCTCAAGGTTTTTGACTATGAGCGCTCCAGCTGGATGGCAGAGCACGGTGTGAAGCCTGAGTGCCAGGAGGGGCCCTGGGACCCCCACAGTATTCGTATCAGTTTTGCTAAAGGATGGGGCCCCTGCTACTCCAGACAGTTCATCACCTCCTGTCCGTGCTGGCTGGAGGTGCTACTCAACAACCACAGAtagcacacagactcacagactcacatgAGGTTTTCTGACCCAGTATCCTAATTGTAATCTACCTAgatttaatataaaatgtatatattatataaaatatattatacatGTAAATACTTGAGTCATTTTTACAATGCAATTATTTATGTATAGTGtaatgtgtactgtatatggacaaaataaaaaggaacaaGAATATGCACTTTTGATTCTATATATGCATTACAGTTTCTCAGTGTCATTTTTGCAAATATAAACTGTAAAGATAAGACAAACCTGGTTTATGTTCTCATGATTTAGCAGTTCCATCAGAAAGTATGCCATACACACattgtcaataaagtatttGTATTAAATGAA

Function

NR:

description
PREDICTED: mothers against decapentaplegic homolog 6

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796074.1 True 2557 mRNA 0.53 4 17456560 17475867

Neighbor

gene id symbol gene type direction distance location
smad3a LOC104927744,LOC103353199,LOC108237917,LOC105936361 coding downstream 21887 17402752 ~ 17434673 (-)
map2k5 map2k5 coding downstream 86134 17296045 ~ 17370426 (-)
skor1a skor1,LOC102309670,LOC100696486,LOC101486626,LOC102796072 coding downstream 172729 17274978 ~ 17283831 (-)
pias1a LOC102795560,LOC101487673,LOC102200240 coding downstream 193498 17200175 ~ 17263062 (-)
LOC120556297 LOC103353194,LOC104949848 coding downstream 270820 17173886 ~ 17185740 (-)
tmem208 tmem208 coding upstream 16241 17492108 ~ 17495778 (-)
LOC120555798 abhd2,LOC103353203,LOC102203876 coding upstream 38807 17514674 ~ 17532546 (-)
bloc1s6 bloc1s6,LOC102775909 coding upstream 99571 17575438 ~ 17579320 (-)
spata5l1 spata5l1 coding upstream 126245 17602112 ~ 17608382 (-)
dtwd1 dtwd1 coding upstream 148976 17624843 ~ 17628639 (-)
G27909 NA non-coding downstream 161674 17293421 ~ 17294886 (-)
G27865 NA non-coding downstream 334980 17021921 ~ 17121580 (-)
G27775 NA non-coding downstream 813751 16638917 ~ 16642809 (-)
G27768 NA non-coding downstream 897555 16558638 ~ 16559005 (-)
G27767 NA non-coding downstream 898039 16557533 ~ 16558521 (-)
G27983 LOC100693649,LOC103353206,LOC102204817 non-coding upstream 87806 17563673 ~ 17605770 (-)
G27989 NA non-coding upstream 109998 17585865 ~ 17595161 (-)
G27998 secisbp2l non-coding upstream 134436 17610303 ~ 17729544 (-)
G28012 LOC101061426,LOC103379093,LOC106532957 non-coding upstream 147472 17623339 ~ 17624074 (-)
G28025 cops2,LOC107557994,LOC105018362 non-coding upstream 219193 17695060 ~ 17696442 (-)
LOC120556401 LOC104927750,LOC104949847,LOC103353195 other downstream 172051 17193513 ~ 17284509 (-)
LOC120555730 adamts7 other downstream 1047692 16321963 ~ 16408868 (-)
LOC120556162 znf609 other downstream 1296678 16071569 ~ 16159882 (-)
cfap70 LOC103368539,LOC102222702,LOC102790175,LOC102296598,LOC102204478,LOC104922799 other downstream 2377730 15050662 ~ 15078830 (-)
G27420 NA other downstream 2612655 14842713 ~ 14843905 (-)
G27925 LOC103353204,LOC106512954,LOC102223374,LOC104951141 other upstream 32256 17508123 ~ 17513168 (-)
c3h15orf48 clg1h15orf48,csgr07h15orf48,LOC103353210,LOC107085327,LOC104951152 other upstream 123883 17599750 ~ 17601390 (-)
G28121 NA other upstream 742255 18218122 ~ 18220550 (-)
G28265 NA other upstream 906838 18382705 ~ 18383642 (-)
G28269 mapk6 other upstream 940202 18416069 ~ 18420499 (-)

Expression


Co-expression Network