htatip2 (htatip2,LOC102791710)


Basic Information

Item Value
gene id htatip2
gene name htatip2,LOC102791710
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 39308042 ~ 39315790 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796075.1
AGCTCAAAGAGAGCACCGTCTGTAAAGATGAAGCAACCAGGAAGCGATCCAGCAATGTAATAGTTGTTACCATGGGTGTTTAACAATAGCAATGTCTCTTGTGCAACAACTGGTCACCACCCTAGGAAATGCGACCGGGCTCTTAACTGTCCTAATCTGTGTCATTGCAGCGGTTTTGAATTATTTCGACGACCCTGATCCGGTTAAATACACCAGCATGGCCGAGGACATAAAGACTCTGGAGGAAAACTTCCAGCGGCAAAATAAAAGCTGTTTCATCCTTGGTGCCTCTGGGGAAACGGGCAATATGTTGCTTCAAGAGCTGCTGAGGCGCAACATCTTCTCCAAGATTACTCTCATCGGAAGGAGACAGCTCACCTTTGAGGACCAAGCATATGCAAACCTGGTACAAGAGGTGGTGGACTTTGAGAAGCTTGACGATTATGCTGCAGCCTTCCAAGGACATGATGTTGGCTACTGCTGCCTGGGAACAACCAAAGCGAAAGCAGGGACTGAAGGATTCATCCGCGTTGATCACGACTATGTTCTAAAATCAGCAGAGCTCGCCAAAGCAGGAGGCAGCACCCAATTCCACCTGGAGTCCTCCAGAGGAGCTGATAAAAACAGCAACTTCCTCTACCTCAAAGTCAAGGGACAAGTGGAAGCAGAGATTGAGGCGCTGGGTTTTGACAGATATGCCATTTACAGACCGGGGGTTTTGTTGGTAGATAGGCAGGAGAGTCGGCCGGCTGAGTGGCTCGCCAGGAAATTCTTCAGTGCTCTTTCTGCTGTGTCTTCTACGTCCATGGCCATCTCAATCCAAGCGGTGGCGAAAGCGATGGTGGCAAACACTCTGCTTCAACCTGAGCAGAAGACGGAGATCCTGGAGAACAAAGCCATCGCCAGTCTGGGAAAGAGTGCAGAGACATAAGAGAAGGCAGGAAACAAACTGAGaggtCATTTCAACAGATATACAGGAGGACTACATACTGCAAACACTACttacatcatcattatcatcatcctCATGATGTCAAAGGATTTTCACATTACTTAATCTTAAAATTGTATTTGGGTTTCATTTCTTGGGTCTTAAAATGATTATATTTTCATCAGGGAACTGTTGCAAGACTTTTGGATGTGCACATTTGTGCTCGGAGACAACCCACTGAACAACTTCCTTAAAGTAAATGCTTGAATTTATTTTACACCAGATTAAAATATTGGATGTCTTTAACCTTTTCattaaaatattatgaatatttaa
>XM_039796076.1
aaaaatacgACTGGATGTGGAATGATATGCATTCTCTCATAAATTCGTCATGAATTGCATCCACtacatactattttttttttaataattaatacaCTCGATTACTGCTGACTACCAATGTCGAAACATTGCTGTCAATTTCCCTCTGTCCTAACACCGTACTAGCGTCCTGTCTGAAGATGGCACTACTTATCATGATAATAGCAGTCTGAATTTCCTATTTATGCCGAAATGACATGGCCGAGGACATAAAGACTCTGGAGGAAAACTTCCAGCGGCAAAATAAAAGCTGTTTCATCCTTGGTGCCTCTGGGGAAACGGGCAATATGTTGCTTCAAGAGCTGCTGAGGCGCAACATCTTCTCCAAGATTACTCTCATCGGAAGGAGACAGCTCACCTTTGAGGACCAAGCATATGCAAACCTGGTACAAGAGGTGGTGGACTTTGAGAAGCTTGACGATTATGCTGCAGCCTTCCAAGGACATGATGTTGGCTACTGCTGCCTGGGAACAACCAAAGCGAAAGCAGGGACTGAAGGATTCATCCGCGTTGATCACGACTATGTTCTAAAATCAGCAGAGCTCGCCAAAGCAGGAGGCAGCACCCAATTCCACCTGGAGTCCTCCAGAGGAGCTGATAAAAACAGCAACTTCCTCTACCTCAAAGTCAAGGGACAAGTGGAAGCAGAGATTGAGGCGCTGGGTTTTGACAGATATGCCATTTACAGACCGGGGGTTTTGTTGGTAGATAGGCAGGAGAGTCGGCCGGCTGAGTGGCTCGCCAGGAAATTCTTCAGTGCTCTTTCTGCTGTGTCTTCTACGTCCATGGCCATCTCAATCCAAGCGGTGGCGAAAGCGATGGTGGCAAACACTCTGCTTCAACCTGAGCAGAAGACGGAGATCCTGGAGAACAAAGCCATCGCCAGTCTGGGAAAGAGTGCAGAGACATAAGAGAAGGCAGGAAACAAACTGAGaggtCATTTCAACAGATATACAGGAGGACTACATACTGCAAACACTACttacatcatcattatcatcatcctCATGATGTCAAAGGATTTTCACATTACTTAATCTTAAAATTGTATTTGGGTTTCATTTCTTGGGTCTTAAAATGATTATATTTTCATCAGGGAACTGTTGCAAGACTTTTGGATGTGCACATTTGTGCTCGGAGACAACCCACTGAACAACTTCCTTAAAGTAAATGCTTGAATTTATTTTACACCAGATTAAAATATTGGATGTCTTTAACCTTTTCattaaaatattatgaatatttaa

Function

symbol description
htatip2 Predicted to be involved in import into nucleus. Predicted to be active in cytoplasm. Orthologous to human HTATIP2 (HIV-1 Tat interactive protein 2).

NR:

description
PREDICTED: oxidoreductase HTATIP2

GO: NA

KEGG:

id description
K17290 HTATIP2; oxidoreductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796075.1 False 1267 mRNA 0.45 7 39308042 39315790
XM_039796076.1 True 1286 mRNA 0.43 7 39308042 39315242

Neighbor

gene id symbol gene type direction distance location
prmt3 prmt3,LOC102792178,LOC102297811 coding downstream 2113 39242675 ~ 39305929 (-)
LOC120555936 nell1 coding downstream 222578 38755925 ~ 39085464 (-)
LOC120555939 NA coding downstream 373435 38932945 ~ 38934607 (-)
LOC120555990 NA coding downstream 694654 38610832 ~ 38613388 (-)
LOC120556549 LOC101080058,LOC102311314,LOC102789927,LOC100707142,LOC101467933 coding downstream 1038499 38261950 ~ 38269543 (-)
nav2a nav2,LOC102790384 coding upstream 46632 39362422 ~ 39480462 (-)
zdhhc13 zdhhc13 coding upstream 314132 39629922 ~ 39646906 (-)
mpped2a mpped2,LOC106524710,LOC102220360,LOC107083882,LOC100703837,LOC102192152,LOC107381839 coding upstream 405482 39721272 ~ 39793912 (-)
LOC120555276 LOC100703294,LOC107381837,LOC103366994,LOC102295725,LOC102215676,LOC101474681 coding upstream 567146 39882936 ~ 39898517 (-)
LOC120556430 LOC101156874,LOC103142636,LOC107083861 coding upstream 586878 39902668 ~ 39910451 (-)
G32751 NA non-coding downstream 65939 39241889 ~ 39242103 (-)
G32749 NA non-coding downstream 70024 39237807 ~ 39238018 (-)
G32742 NA non-coding downstream 179935 39127908 ~ 39128107 (-)
G32684 NA non-coding downstream 936970 38369083 ~ 38371072 (-)
G32568 NA non-coding downstream 1319854 37987103 ~ 37988188 (-)
G32828 NA non-coding upstream 227381 39543171 ~ 39607321 (-)
LOC120556195 NA non-coding upstream 332157 39647947 ~ 39653298 (-)
G32912 NA non-coding upstream 514779 39830569 ~ 39913728 (-)
G32922 NA non-coding upstream 627623 39943413 ~ 39946579 (-)
G32923 NA non-coding upstream 628581 39944371 ~ 39947111 (-)
slc6a5 slc6a5 other downstream 72296 39205275 ~ 39235746 (-)
LOC120556344 lrrc49,LOC102795887 other downstream 1480771 37788725 ~ 37827271 (-)
ss18l2 ss18l2 other downstream 2054616 37231141 ~ 37253426 (-)
nod2 nod2 other downstream 2416738 36883651 ~ 36891304 (-)
cylda cyld other downstream 2425247 36859547 ~ 36882795 (-)
LOC120556511 LOC102208128,LOC101468289 other upstream 733834 40049624 ~ 40142048 (-)
LOC120556146 NA other upstream 1248451 40564241 ~ 40589664 (-)
G33122 NA other upstream 1332886 40648676 ~ 40662621 (-)
LOC120556513 NA other upstream 1345574 40661364 ~ 40663657 (-)
sirt3 sirt3 other upstream 2441837 41757627 ~ 41764896 (-)

Expression


Co-expression Network