slc12a4 (slc12a4)


Basic Information

Item Value
gene id slc12a4
gene name slc12a4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 35442829 ~ 35468809 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796099.1
GTGAGCGCAGTGTAGTGGAATGTAGTTACCATTAGTGGGAGTTGAGCTGAAgctggctaacagctagcctgctatGTTGAGTTGCTGAGCTGGAGACGCAGAGGATAGTGATGAAAACATGCCTCACTTCACAGTGGTACCGGTGAAGGATCAAGCTCAGTCCAACTACGATAGTCTAGAGGGGATTAACTGGGTGGATTACAGAGACACTGGACAGGACTGTCCTGATCATCAAGATACTGTCAGCTCTGATGGACACGAGAATCATAAAGAAGACAGTCCATTTCTCAACAATGCTGATGCTGCTAGCAAAAAGAATGATTTCTATGACAGAAATCTGGCTTTGTTTGAGGAAGAGCTGGACATCCGGCCAAAGGTTTCCTCCCTGCTCAGCCGCTTGGTCAGCTACACCAACATCACCCAGGGAGCCAAGGAGCATGAGGAGGCGGAGAGCGCTGAGGCCTCACGCAGGAAGACCCCCAAGTCTCCCAACATGGGCACTCTGATGGGGGTCTACTTGCCGTGTCTGCAGAACATCTTTGGTGTCATTCTTTTCCTCCGACTGACTTGGATTGTTGGGATGGCTGGCATCATGCAGTCCCTCCTGATTGTCCTCATGTGCTGCTCATGTACAATGCTCACGGCCATATCAATGAGTGCCATTGCCACGAATGGTGTTGTTCCAGCTGGAGGGGCATACTTCATGATCTCCCGATCCCTTGGCCCTGAGTTTGGAGGAGCTGTGGGTCTGTGCTTCTACTTAGGCACCACCTTTGCTTCTGCCATGTACATTCTGGGTGCCATCGAAATCTTCTTGAAATATTTGGTCCCCCAGGCGGCCATATTTCACGCTACAGACACCCTTGGGAGTGACAGTGCCATGCTGAACAATATGCGAGTCTACGGCTCTATCTGCCTCAGCCTGATGGCTGTGGTGGTTTTTGTAGGAGTCAAATATGTCAACAAGCTGGCTTCTCTTTTCCTGGCCTGCGTCATTATCTCAATTGTTTCTATCTATGCTGGGGCATTAAAATCCATGACTCATCCCCCTGAATTCCCGAtctgcatgctgggaaacagaACGTTGGTGAGAGATCGCTTCGATGTGTGTGCTAAGACTGTGATAAAGGGTAACATCACGGTGCCCAGTCAGCTGTGGGAAAGGTTCTGTCTGCCGGGGAACATGAGCAGCGCTCAGTGTGATGACTACTTCATCCAGAACAATGTGACAGAGATACAGGGCATCCCTGGACTTGGCAGTGGAATTATAAGAGAAAACATGTGGGGCGACTACCAACAGAAAGGGGAGATCTTAGAGAAAGCGGGGCTACAGTCAGTGGATGCCCATGGTGCCGTGGAGAACTTTGGCATGTATGTGTCAGCAGACATCGCTACATCATTCACACTTCTGGTTGGGATCTTCTTCCCATCTGCCACAGGTATCATGGCAGGGTCCAACAGATCTGGTGATCTCCGTGATGCTCAAAAGTCCATCCCTGTGGGAACTATCTTAGCCATTACTACTACTTCACTTGTTTATTTCAGTTCTGTGGTTCTGTTTGGATCTTGTATCGAAGGAGTAGTCCTTAGGGACAAATTTGGAGACGCCGTTCGAAAAAACTTGGTGGTGGGAACGCTCTCCTGGCCGTCTCCGTGGGTTATTGTCATTGGCTCCTTCTTCTCTACGGTTGGGGCAGGCCTGCAGTCGCTCACTGGGGCTCCCCGACTTCTACAGGCTATAGCCAAAGACAACATCATTCCTTTCCTCAGGgTGTTCGGTCACGGAAAGACCAATGGAGAGCCTACATGGGCCCTACTACTGACTGGTCTCATAGCTGAGCTGGGCATCCTTATTGCCTCCCTCGACATGGTGGCTCCCATACTTTCAATGTTCTTCTTGATGTGCTATCTCTTTGTGAACTTAGCCTGTGCAGTTCAGACTCTTTTACGAACACCCAACTGGAGGCCAAGGTTTAAATATTACCACTGGGCTCTGTCCTTCCTTGGCATGAGTATGTGTCTGGCTCTAATGTTCATCTCCTCCTGGTACTACGCTATTGTGGCCATGGTCATTGCTGGGATGATCTACAAATACATTGAGTACCAGGGAGCAGAGAAGGAGTGGGGAGATGGCATAAGAGGACTGTCCCTTAGCGCTGCGCGATACGCCCTGTTGAGACTAGAGGTTGGACCCCCGCACACCAAGAACTGGAGACCTCAGCTGCTTGTGCTGTTGAAACTGGATGAGGACCTCCATGTAAAATACCCTCGTCTGCTCACCTTTGCCTCGCAGCTAAAGGCAGGAAAGGGTCTGACCATTGTGGGCTCTGTCGTCCAGGGCAACTTCCTGGAAAGCTATGGGGAAATGCAGGCCGCTGAGCAGACCATTAAGAATATGATGGAGATTGAGCGAGTCAAGGGTTTCTGCCAGATTGTGGTGGCATCTAAGGTGCGGGAGGGTATTGTCCATCTGATCCAGTCCTGTGGTCTGGGGGGCATGAAGCACAACACTGTGATGATGGGCTGGCCGTACGGCTGGCGACAGAGTGAGGACCCTCGTGCCTGGAAGACTTTTATCAACACAGTCCGCTGCACCACAGCTGGCCACCTGGCCCTGATGGTGCCCAAAAATGTGTCCTTTTACCCGAGCAACCATGAACGCTTCACAGATGGCAACATTGACGTTTGGTGGATCGTCCATGATGGGGGGATGCTAATGCTGCTGCCTTTTCTGCTCAAACTGCATAAAGTTTGGAGGAAATGCAAGATGCGCATCTTCACTGTAGCCCAGATGGATGATAACAGCATCCAGATGAAGAAAGATCTGGCCACATTCCTTTACCAGCTGAGAATAGAGGCTGAGGTGGAGGTGGTGGAGATGCACGACAGTGACATCTCAGCGTACACCTATGAGCGAACGTTAATGATGGAGCAGAGGTCCCAAATGTTGAGGCAAATGAGGCTGTCcggtgcagaaagacaaagagaaGCCCAGCTGGTTAAGGACAGACACTCTTTGGTGCGTATGGGAAGTCTATActcagatgaggaggaggaggtggtggaggcTCCTCCAGAGAAGGTCCAGATGACGTGGACAAGAGAGAAGTGTGAGGCTGAGAGGAGGAACAGGAACAATGCACCCGAGAACTTCAGAGAACTCATGAGCCTCAAACCGGATCAGTCTAATGTGCGACGAATGCATACAGCTGTGAAGCTGAACGAGGTAATAGTCAACAGGTCCCATGATGCTCGATTAGTGCTGCTCAACATGCCAGGGCCACCTCGTAACACAGACGGAGATGAGAACTATATGGAGTTTCTGGAGGTGTTGACTGAAGGCTTGGAAAGAGTGCTGCTGGTCCGAGGTGGAGGTCGAGAGGTTATCACCATCTACTCATGATCAATTATTAGCTGCTACACCTTAGCATCTGCCTCATCAGAATGCATTCCGCCTCTGGACAGGAGGCAGCACCTGCTTTGCTGCCAGACAGTTCTGGGTAGACGCATGAATTTGACACTTTTATAGTAAAGTATGGATTTTTCAGTAcgaaggagttttttttttttatttgtatagaaTACTGGCACACACTAGTGTTCACCTCCACCTGTATGTTCACAACTCTGCcattctttacaaatgaaagcTGTTTCTCCTTCAGAAATCAATACTTTAGATAAGCATTTTCTTATTCATAGGTCACAAATGCCTCTTCATATGTGATAATAAACCTATTTTTGAAAGACTATGGCAGACTATCCTGACTGAGAAGTACACATGTTGGTAGAACAGTTTTAATAGTATGCCAGATTTTTATTCTGAAACAGCTCTTCGATTATTTTGGAAGCACatctctatttatttatttatttttttcaacatttcccCACTGAGATAAAGTAAATGTTACTGTGGTTATCGAACACACCGCTTGACGTTGGTTGTGCTGTAGAGGTGGCATGCCAGAGATCATAAAGCAAGTTTTCAAAAGAAGTTAtaatttatgatttttttggacAGATATTTGTGTTGTTAATATGAGAGAAAAATGTATATGCATGACTTTTGACTGTTACATTTGTACTTTTTCTACAGACCTGGAAAGCTTAAAAAGATGGCTTAATTTAAAGTTATAATCCCACTTTTGATACTATTTATGGTCTGCATTTTTTATGCAATAGCCATTAAACATATTCACACTGAATGGCAATTGTAAATACCTTTCTATTTAGTTGTTTTCATCGTTTCATCCCTCACTGGATTATAACATACCTACAAcgtgagtttgtttgtttgtgctgaaaacaaatacactaGTTGGTATTGTGTTGTATTTCTGACAAAGTAGCTGCTCAAGGAGTATTACACTTCCTTACAATAACCATAGGTGTAGCCAAATCAACCCTGGCTGAAATCTTAAGGATTACAACTTTAAGCAATTCTGATCTCAGCTACATGAAACTTTCAGACactgttttgtgtattttccgttttattttttttatttttattttataagaaGCTGATTATGATAAGTATTTCAGGCCAGAATACAGTGTAGAGAACAACTGTATGTAACTGTATGTAGACTAAACGATCTGTACaagctaacagtgttttattTGTAAGGGATCAACCATGACAAGCTGTGcagttattaaaaatgtatttcacaatGCTAAGAATGCTCCTGGTATTCCCTTCACTTTAATAAAAACAGGCTGGAGTGGATTATCCCACTGAAAAATA
>XM_039796100.1
GTATTCACCCTGGGTGACCGAGTGTCCTGTATAGTGATCGACAATTCCCCAAGCTAGAGCACAGAGTGCTCTGTTGCAGTCTTCACACATCGTATAACTATGCTTACCCACAGAGATACTAGCAGCAGtgggacacaggacacagGACACGAGAATCATAAAGAAGACAGTCCATTTCTCAACAATGCTGATGCTGCTAGCAAAAAGAATGATTTCTATGACAGAAATCTGGCTTTGTTTGAGGAAGAGCTGGACATCCGGCCAAAGGTTTCCTCCCTGCTCAGCCGCTTGGTCAGCTACACCAACATCACCCAGGGAGCCAAGGAGCATGAGGAGGCGGAGAGCGCTGAGGCCTCACGCAGGAAGACCCCCAAGTCTCCCAACATGGGCACTCTGATGGGGGTCTACTTGCCGTGTCTGCAGAACATCTTTGGTGTCATTCTTTTCCTCCGACTGACTTGGATTGTTGGGATGGCTGGCATCATGCAGTCCCTCCTGATTGTCCTCATGTGCTGCTCATGTACAATGCTCACGGCCATATCAATGAGTGCCATTGCCACGAATGGTGTTGTTCCAGCTGGAGGGGCATACTTCATGATCTCCCGATCCCTTGGCCCTGAGTTTGGAGGAGCTGTGGGTCTGTGCTTCTACTTAGGCACCACCTTTGCTTCTGCCATGTACATTCTGGGTGCCATCGAAATCTTCTTGAAATATTTGGTCCCCCAGGCGGCCATATTTCACGCTACAGACACCCTTGGGAGTGACAGTGCCATGCTGAACAATATGCGAGTCTACGGCTCTATCTGCCTCAGCCTGATGGCTGTGGTGGTTTTTGTAGGAGTCAAATATGTCAACAAGCTGGCTTCTCTTTTCCTGGCCTGCGTCATTATCTCAATTGTTTCTATCTATGCTGGGGCATTAAAATCCATGACTCATCCCCCTGAATTCCCGAtctgcatgctgggaaacagaACGTTGGTGAGAGATCGCTTCGATGTGTGTGCTAAGACTGTGATAAAGGGTAACATCACGGTGCCCAGTCAGCTGTGGGAAAGGTTCTGTCTGCCGGGGAACATGAGCAGCGCTCAGTGTGATGACTACTTCATCCAGAACAATGTGACAGAGATACAGGGCATCCCTGGACTTGGCAGTGGAATTATAAGAGAAAACATGTGGGGCGACTACCAACAGAAAGGGGAGATCTTAGAGAAAGCGGGGCTACAGTCAGTGGATGCCCATGGTGCCGTGGAGAACTTTGGCATGTATGTGTCAGCAGACATCGCTACATCATTCACACTTCTGGTTGGGATCTTCTTCCCATCTGCCACAGGTATCATGGCAGGGTCCAACAGATCTGGTGATCTCCGTGATGCTCAAAAGTCCATCCCTGTGGGAACTATCTTAGCCATTACTACTACTTCACTTGTTTATTTCAGTTCTGTGGTTCTGTTTGGATCTTGTATCGAAGGAGTAGTCCTTAGGGACAAATTTGGAGACGCCGTTCGAAAAAACTTGGTGGTGGGAACGCTCTCCTGGCCGTCTCCGTGGGTTATTGTCATTGGCTCCTTCTTCTCTACGGTTGGGGCAGGCCTGCAGTCGCTCACTGGGGCTCCCCGACTTCTACAGGCTATAGCCAAAGACAACATCATTCCTTTCCTCAGGgTGTTCGGTCACGGAAAGACCAATGGAGAGCCTACATGGGCCCTACTACTGACTGGTCTCATAGCTGAGCTGGGCATCCTTATTGCCTCCCTCGACATGGTGGCTCCCATACTTTCAATGTTCTTCTTGATGTGCTATCTCTTTGTGAACTTAGCCTGTGCAGTTCAGACTCTTTTACGAACACCCAACTGGAGGCCAAGGTTTAAATATTACCACTGGGCTCTGTCCTTCCTTGGCATGAGTATGTGTCTGGCTCTAATGTTCATCTCCTCCTGGTACTACGCTATTGTGGCCATGGTCATTGCTGGGATGATCTACAAATACATTGAGTACCAGGGAGCAGAGAAGGAGTGGGGAGATGGCATAAGAGGACTGTCCCTTAGCGCTGCGCGATACGCCCTGTTGAGACTAGAGGTTGGACCCCCGCACACCAAGAACTGGAGACCTCAGCTGCTTGTGCTGTTGAAACTGGATGAGGACCTCCATGTAAAATACCCTCGTCTGCTCACCTTTGCCTCGCAGCTAAAGGCAGGAAAGGGTCTGACCATTGTGGGCTCTGTCGTCCAGGGCAACTTCCTGGAAAGCTATGGGGAAATGCAGGCCGCTGAGCAGACCATTAAGAATATGATGGAGATTGAGCGAGTCAAGGGTTTCTGCCAGATTGTGGTGGCATCTAAGGTGCGGGAGGGTATTGTCCATCTGATCCAGTCCTGTGGTCTGGGGGGCATGAAGCACAACACTGTGATGATGGGCTGGCCGTACGGCTGGCGACAGAGTGAGGACCCTCGTGCCTGGAAGACTTTTATCAACACAGTCCGCTGCACCACAGCTGGCCACCTGGCCCTGATGGTGCCCAAAAATGTGTCCTTTTACCCGAGCAACCATGAACGCTTCACAGATGGCAACATTGACGTTTGGTGGATCGTCCATGATGGGGGGATGCTAATGCTGCTGCCTTTTCTGCTCAAACTGCATAAAGTTTGGAGGAAATGCAAGATGCGCATCTTCACTGTAGCCCAGATGGATGATAACAGCATCCAGATGAAGAAAGATCTGGCCACATTCCTTTACCAGCTGAGAATAGAGGCTGAGGTGGAGGTGGTGGAGATGCACGACAGTGACATCTCAGCGTACACCTATGAGCGAACGTTAATGATGGAGCAGAGGTCCCAAATGTTGAGGCAAATGAGGCTGTCcggtgcagaaagacaaagagaaGCCCAGCTGGTTAAGGACAGACACTCTTTGGTGCGTATGGGAAGTCTATActcagatgaggaggaggaggtggtggaggcTCCTCCAGAGAAGGTCCAGATGACGTGGACAAGAGAGAAGTGTGAGGCTGAGAGGAGGAACAGGAACAATGCACCCGAGAACTTCAGAGAACTCATGAGCCTCAAACCGGATCAGTCTAATGTGCGACGAATGCATACAGCTGTGAAGCTGAACGAGGTAATAGTCAACAGGTCCCATGATGCTCGATTAGTGCTGCTCAACATGCCAGGGCCACCTCGTAACACAGACGGAGATGAGAACTATATGGAGTTTCTGGAGGTGTTGACTGAAGGCTTGGAAAGAGTGCTGCTGGTCCGAGGTGGAGGTCGAGAGGTTATCACCATCTACTCATGATCAATTATTAGCTGCTACACCTTAGCATCTGCCTCATCAGAATGCATTCCGCCTCTGGACAGGAGGCAGCACCTGCTTTGCTGCCAGACAGTTCTGGGTAGACGCATGAATTTGACACTTTTATAGTAAAGTATGGATTTTTCAGTAcgaaggagttttttttttttatttgtatagaaTACTGGCACACACTAGTGTTCACCTCCACCTGTATGTTCACAACTCTGCcattctttacaaatgaaagcTGTTTCTCCTTCAGAAATCAATACTTTAGATAAGCATTTTCTTATTCATAGGTCACAAATGCCTCTTCATATGTGATAATAAACCTATTTTTGAAAGACTATGGCAGACTATCCTGACTGAGAAGTACACATGTTGGTAGAACAGTTTTAATAGTATGCCAGATTTTTATTCTGAAACAGCTCTTCGATTATTTTGGAAGCACatctctatttatttatttatttttttcaacatttcccCACTGAGATAAAGTAAATGTTACTGTGGTTATCGAACACACCGCTTGACGTTGGTTGTGCTGTAGAGGTGGCATGCCAGAGATCATAAAGCAAGTTTTCAAAAGAAGTTAtaatttatgatttttttggacAGATATTTGTGTTGTTAATATGAGAGAAAAATGTATATGCATGACTTTTGACTGTTACATTTGTACTTTTTCTACAGACCTGGAAAGCTTAAAAAGATGGCTTAATTTAAAGTTATAATCCCACTTTTGATACTATTTATGGTCTGCATTTTTTATGCAATAGCCATTAAACATATTCACACTGAATGGCAATTGTAAATACCTTTCTATTTAGTTGTTTTCATCGTTTCATCCCTCACTGGATTATAACATACCTACAAcgtgagtttgtttgtttgtgctgaaaacaaatacactaGTTGGTATTGTGTTGTATTTCTGACAAAGTAGCTGCTCAAGGAGTATTACACTTCCTTACAATAACCATAGGTGTAGCCAAATCAACCCTGGCTGAAATCTTAAGGATTACAACTTTAAGCAATTCTGATCTCAGCTACATGAAACTTTCAGACactgttttgtgtattttccgttttattttttttatttttattttataagaaGCTGATTATGATAAGTATTTCAGGCCAGAATACAGTGTAGAGAACAACTGTATGTAACTGTATGTAGACTAAACGATCTGTACaagctaacagtgttttattTGTAAGGGATCAACCATGACAAGCTGTGcagttattaaaaatgtatttcacaatGCTAAGAATGCTCCTGGTATTCCCTTCACTTTAATAAAAACAGGCTGGAGTGGATTATCCCACTGAAAAATA

Function

symbol description
slc12a4 Predicted to enable potassium:chloride symporter activity. Predicted to be involved in several processes, including cell volume homeostasis; inorganic ion homeostasis; and inorganic ion transmembrane transport. Predicted to act upstream of or within potassium ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in anterior neural keel; anterior neural rod; central nervous system; eye; and margin. Orthologous to human SLC12A4 (solute carrier family 12 member 4).

NR:

description
PREDICTED: solute carrier family 12 member 4 isoform X1

GO:

id name namespace
GO:1902476 chloride transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015379 potassium molecular_function

KEGG:

id description
K14427 SLC12A4_6, KCC1_3; solute carrier family 12 (potassium/chloride transporter), member 4/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796099.1 True 4753 mRNA 0.46 24 35442829 35468809
XM_039796100.1 False 4644 mRNA 0.46 24 35442829 35458846

Neighbor

gene id symbol gene type direction distance location
pkma pkm,LOC101466927,LOC102785629,LOC105930156,LOC107381266 coding downstream 283296 35139463 ~ 35159533 (-)
rec114 NA coding downstream 421525 34964659 ~ 35021304 (-)
LOC120556290 LOC102076597,LOC103462686,LOC102304084,LOC106922154,LOC106961725,LOC106587172,LOC107081502 coding downstream 473204 34964948 ~ 34969625 (-)
chrna5 NA coding downstream 487752 34942334 ~ 34955077 (-)
LOC120556551 LOC103358809,LOC104958159 coding downstream 501924 34937904 ~ 34940905 (-)
slc6a2 slc6a2 coding upstream 20271 35489080 ~ 35523483 (-)
lpcat2 lpcat2 coding upstream 63139 35531948 ~ 35544685 (-)
mmp2 mmp2 coding upstream 76735 35545544 ~ 35562094 (-)
irx6a irx6 coding upstream 141344 35610153 ~ 35616798 (-)
irx5a irx5 coding upstream 302500 35771309 ~ 35775069 (-)
G32072 NA non-coding downstream 259056 35101940 ~ 35183773 (-)
G32077 LOC102786496,LOC102306459 non-coding downstream 307119 35134739 ~ 35135710 (-)
G32070 NA non-coding downstream 371938 35070367 ~ 35070891 (-)
G32060 LOC103373785,LOC104925039 non-coding downstream 439378 34993457 ~ 35003451 (-)
G31994 NA non-coding downstream 575311 34864877 ~ 34867518 (-)
G32153 NA non-coding upstream 157722 35626531 ~ 35700759 (-)
G32187 NA non-coding upstream 297919 35766728 ~ 35766929 (-)
G32236 NA non-coding upstream 561046 36029855 ~ 36030115 (-)
G32242 aktip non-coding upstream 746201 36215010 ~ 36216531 (-)
G32246 NA non-coding upstream 751642 36220451 ~ 36222194 (-)
G31955 NA other downstream 843288 34490660 ~ 34599541 (-)
LOC120555494 arpp19,LOC101481874,LOC103358163 other downstream 1626441 33806918 ~ 33816388 (-)
serf2 NA other downstream 1873450 33566371 ~ 33569379 (-)
znf710b LOC104936257,LOC102799163,LOC101477128 other downstream 1971494 33436811 ~ 33471335 (-)
wdr76 frmd5,LOC103354945,LOC103374291 other downstream 2089381 33342247 ~ 33353448 (-)
cylda cyld other upstream 1390738 36859547 ~ 36882795 (-)
nod2 nod2 other upstream 1414842 36883651 ~ 36891304 (-)
ss18l2 ss18l2 other upstream 1762332 37231141 ~ 37253426 (-)
LOC120556344 lrrc49,LOC102795887 other upstream 2319916 37788725 ~ 37827271 (-)
slc6a5 slc6a5 other upstream 3736466 39205275 ~ 39235746 (-)

Expression


Co-expression Network