hdc (hdc,LOC106587893,LOC103379072)


Basic Information

Item Value
gene id hdc
gene name hdc,LOC106587893,LOC103379072
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18454656 ~ 18458552 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796122.1
CGTTACACGCAACAAATTAACCCTAAGAGCTCTCATCTCAAAAACAATGCAGGCTGAGGAATACAATCGCAGAGGTAAGGAGTTGGTGGACTACATCACACAGTACCTGGGCTCCATCAGGGAGAGGAGGGTGATTCCAGATGTGAAGCCAGGTTACATGAAGGAGCTTCTCCCTGACACAGCGCCTACCGAGCCGGAGGACTGGGAGACTATCTTCAACGACATCGAGAAAGTCATCATGCCAGGAGTGGTTCACTGGCAGAGCCCTCATATGCACGCCTACTACCCTAGTCTGACTTCATGGCCCTCTATGCTTGGAGACATGCTGGCTGACGCCATTAATTGTGTTGGATTCACCTGGGCCTCCAGTCCAGCATGTACAGAATTGGAAATGAATGTGATGGACTGGTTGTGTAAAGCACTGGGGCTCCCGTCCTTCTTCCTGCATCACCATCCTGACAGCAGAGGTGGAGGCATACTGCAGAGCACAGTCAGTGAGAGCACACTGGTTGCTCTGCTGGCAGCCAGGAAAGACAAATTTTTGCAGCTGCAGGCTGAGCTCGACCAGGACGTGGACGATTCGGCCTTAAATTCAAGACTGGTGGCTTACGCTTCAGATCAGGCTCATTCCTCAGTTGAGAAGGCAGGTCTGATCTCTCTGGTGAAGATCAGGTTTCTGCCCACTGATGAGCAGCTGTCTCTGAAAGGAGACACGTTGAAACAAGCCATACAAGAAGACAGGAGAAGGGGATTGGTCCCTTTCATGCTGTGTGCAACTTTGGGAACTACAGGAGTGTAAGAAGGACTGTGGCTCCATGTTGATGCTGCGTACGCTGGCTCAGCCTACTTCTGTCCTGAGCTCCGCTGGTCCCTGGAGGGCATTGAATTGGCTCACTCTTTTGTCTTCAACCCCTCCAAGTGGATGATGGTTCACTTTGACTGCACAGCATTCTGGGTGAAGGACAAATATAAGCTCCAACAGACGTTCACAGTTGATCCTGTTTACCTCAGACATGAAAACTCACAGGCAGCCACGGACTTTATGCACTGGCAAATTCCCCTCAGCCGACGATTCCGTTCTCTCAAACTCTGGTTTGTTATGCGGTCCTTTGGACTGAAAAACCTCCAGGCTCATATCAGACATGGGATTGAGATGGCAAAACTCTTGGAGTCTCACATAAAGAGTGACCCAAATTTTGAGGTTCCTGCTGAGAGGCACCTTGGCTTGGTGGTGTTCTGCCTGAAAgGTGGAAATGCTTTAACCCAGGAGCTGCTGAGGAGACTGACCCGGTCAGGCACAATGTACCTCATCCCTGCAGACATTCACACCAAGCGTATCATCCGATTCACAGTGACCTCACAGTTCACTACCGCAGAGGACATCCTTAAGGACTGGAGCATCATCTCCAAAACGGCTTCCACTCTTCTGGCTGAGACACAGGCCCTGAATAATGCAGACCAACCAAAATCAGGGAAAGATGAGGCGACAGAACAACTGTTGTCTGGCTACAACTTTGAAACAAGGCCTAGTCTTAAAGATGCTGCAGGTGCCCTCCCCAGCACGCCATCAACGGCAGGATCTGGTCCTATGTTTAAGATTACAGAGACGCCTTCAAATATTCTGGGTAAACAGGTTCTGAAAAAGCTGACAAAGTTCTACAGCGTGCCCAGTTTCTGCAACCAGTGGGTGCAATGTGGCCCGCACCAGCTCTGCTGCCCTGTGAAGGTTTCACAGGCAACTCCAAAACACTTGTCCTCCACCTGCAGAAGAATGAACTGTATGACTTCTTCTACTGTAGCCAACACAGCTCCCTCTCCTACAACTCTGGAAACTGCCACGGCACCCGAGCGCTTGTAA

Function

symbol description
hdc Predicted to enable histidine decarboxylase activity. Acts upstream of or within chemical synaptic transmission; nervous system development; and response to light stimulus. Predicted to be active in cytoplasm. Is expressed in brain; caudal hypothalamic zone; hypothalamus; and posterior recess. Human ortholog(s) of this gene implicated in Gilles de la Tourette syndrome; asthma; and rhinitis. Orthologous to human HDC (histidine decarboxylase).

NR:

description
PREDICTED: histidine decarboxylase

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K01590 hdc, HDC; histidine decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796122.1 True 1858 mRNA 0.51 12 18454656 18458552

Neighbor

gene id symbol gene type direction distance location
LOC120555692 LOC104956759 coding upstream 15216 18433272 ~ 18439440 (+)
mapk6 mapk6 coding upstream 35106 18403621 ~ 18419550 (+)
leo1 leo1 coding upstream 74310 18362149 ~ 18380346 (+)
scg3 scg3 coding upstream 133352 18306445 ~ 18321304 (+)
tnfaip8l3 tnfaip8l3 coding upstream 159142 18273688 ~ 18295514 (+)
gatm gatm,LOC102780634 coding downstream 27510 18486062 ~ 18491068 (+)
pde8a pde8a,LOC100690151,LOC102210709,LOC101463592,LOC102780154 coding downstream 46976 18505528 ~ 18557335 (+)
LOC120555641 whamm,LOC102778540 coding downstream 127221 18585773 ~ 18604970 (+)
LOC120555930 NA coding downstream 180730 18639282 ~ 18642799 (+)
LOC120556269 tm6sf1 coding downstream 201310 18659862 ~ 18663990 (+)
G28163 usp8,LOC102785891 non-coding upstream 9360 18444816 ~ 18445296 (+)
LOC120555993 NA non-coding upstream 273455 18004828 ~ 18181201 (+)
G28083 NA non-coding upstream 535460 17918900 ~ 17919196 (+)
G28065 NA non-coding upstream 565439 17888761 ~ 17889217 (+)
G28066 slc24a5,LOC102781271 non-coding upstream 578483 17871746 ~ 17876173 (+)
G28195 homer2 non-coding downstream 148753 18607305 ~ 18615809 (+)
LOC120556026 NA non-coding downstream 387717 18846269 ~ 18847406 (+)
G28393 NA non-coding downstream 595572 19054124 ~ 19055004 (+)
G28394 NA non-coding downstream 598994 19057546 ~ 19057853 (+)
G28396 NA non-coding downstream 613268 19071820 ~ 19072036 (+)
LOC120555788 NA other upstream 711208 17724545 ~ 17743448 (+)
LOC120556001 rbpms2,LOC107381790,LOC103368877,LOC104957780 other upstream 2968205 15475147 ~ 15486451 (+)
LOC120556433 psma4,psa4,LOC106562664 other upstream 3008164 15441455 ~ 15446492 (+)
LOC120556271 tmem138,LOC104922799,LOC102296598,LOC102204478,LOC104956289,LOC103368539,LOC102790175,LOC102222702 other upstream 3401034 15047877 ~ 15053622 (+)
kcna4 kcna4 other upstream 3489594 14889390 ~ 14965062 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other downstream 103321 18561873 ~ 18575942 (+)
LOC120555697 NA other downstream 615756 19074308 ~ 19087064 (+)
G28581 NA other downstream 1028694 19487246 ~ 19487533 (+)
ercc3 ercc3 other downstream 1053804 19512356 ~ 19520218 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 1313567 19772119 ~ 19993954 (+)

Expression


Co-expression Network