XLOC_005079 (rfng)


Basic Information

Item Value
gene id XLOC_005079
gene name rfng
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3054442 ~ 3077395 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009879
TTCAAAACGTGCGTCTTTGGCATCAACAGAAAGGACAATGTAGTTGTTGGATATATATTTGGCAACGCGCAGACGCAGAGGTCATTATAAACAACCCAAGACAGCAGAGATGATGCACAACTGAACAACAGAGAGTTTGAGCTGCTGAAACCAAAGATATGCGTGAAACTTTATAATAAACAGCGGAAACTGACTGAACATATGAGCTCCAGAAGCAGAAGAAGTCAAGCAGGAACAATAAGGCTTGTGTGATTCATGCTGATTTCTACTCGACGAAAAGCTGCTGAAATCACCGACCCAGCCTTCGCCTGCGGATTATTTCAGCCTAGCATGATCTATACTGATTTCTGTGGTTTCACCGGTTTAAAAGTCTGGAAAATGAGGAGTATATTGACCCGAAACCAGTCCGACCGCTCTCGAATGATGCACTGAAGATGGGCTCTGCAGCAGTGAGTCAGGCAGGCGCGGGCGGTTGAGCTGGCGTTCAGCATTGGAAGAATGCACTTATCCCATGTCGGCTCCAACAAAACCTGCTTTCTGCTTTCCCTCGCATTCTGTGCCCTGCTGGTGCTGCTTATTCCCTCCTTACAACCTCCACAGCGTCAGGCGGATCTGCCTCAGCCGCGGCCCCATGCCAAACCCGCCAAACACCCACTCAAAAACTCTCTCTACAGACCAAATGAAGACACCAGGGGTGGTAGTTTTACTCAAACAACTCCACCTGAGAACCTGCAGAAGATGGACGATCTAAACTCGCACTACAGAGACTTCCTGGACTTAAGAGACATTTTTATTGCTGTGAAGACCACTAGGAAGTATCACAAGTCCAGATTGCAGCTCCTGTCCCAGACCTGGGTGTCCAGAGCGAAGGAGCAGACGTTTATCTTCACTGATGGGGAGGACAAGGAGCTCCGGCTGAAAGCAGGGCTGAACATCATCAACACCAACTGCTCGGCGGCTCACACACGCCAAGCCCTGTGCTGCAAGATGTCTGTGGAGTATGACAAGTTCATCGAGTCACAGAAAAAGTGGTTTTGTCATGTGGATGATGATAACTATGTGATCCTGCCCAGTCTACTGGAGCTTCTGTCCTCGTACTCTCACACACAGGATGTGTATCTGGGCCGGCCTAGCCTGGATCATCCTATAGAGGCTGCAGAGAGAGTCAAGAGCGACGGATCGGTGTCAGTGAAGTTCTGGTTTGCCACTGGTGGAGCTGGTTTCTGCATCAGTCGAGGTTTAGCGCTCAAAATGAGTCCATGGGCCAGTCTTGGAAACTTTATCACAACAGCAGAGAAGATCCGTCTGCCAGATGACTGTACAATTGGCTACATCATCGAGGCGCTGCTGGAGGTTCCTCTCACCCACACAGGCCTGTTTCACTCACACCTGGAGAACCTGCAGAGACTGCCTGCAGAAAACATCCTGCGACAGGTGACCCTCAGTTATGGTGGATTCGAGAACAGGAGGAATGTGGTCAGTGTTGGAGGAGCGTTTTCATTGGCTGAAGACCCAACACgGTTTAAAACGGTTCACTGCAAGCTCTACCCAGACACCGAGTGGTGCCCACGCAAGACTCGCCATTGACGTCTGGTATACGAATGCATCATCATGGAGCATCAACTTTCTCATGCTTTCCACAACACTATCTATACCAAAGGAACAGGCAGAATAACTGAGCACAGATTGTGATGGTTGCAAATAAGAAACGCTAGTTAGATCACATTCACAGACTACAGTATGTTGTATCTCCTTTGCCAgaacaaaaatctaaacaatcTTAAACCAACATACATTTACTTAAGCAGAAGAAGAACATATCTCAAAGTGTCTTTCAGTTGGTTTTCATTTATAAACATTGATGTTTTCTCCTGTTTTTAACACAAACTTATGATTGAAGTGATGTGCTGCTCATGTAAATGTATGGGGATTTAAGATTTGTGGTATTTTTATAATGGGAGACAAGACTAATATTgagcaagaaaatgttttttCATTGTATCTGGTACTTTTAAATGAAGAAACAGGGTGGCTGACACTCTTTTTCCTCTTGAAATACTGCGTTCTGAGAACTGCCAAGTGATTTACATAAAGCGAGTCCCTTTCATAAGAGCGTTTCGAAAGGATTGCGCAATTATTTTCTTACTGAAATGATTTTATCCACATTTTTTGTGGCTTTGACATCATCTTTATTGAGTTGTCCTTTTCCTAAAGGCCATAAATATGCCCAGCACAGCCCTTTAGATTTGTGTGCGATGATCTGCAACGTCTCCAGGGATGAAGAAAACTGTATTGATGCATCATCTTAGCATTTTGTTTGCAAGATTTATGCAGGCCAGCTCATCTGCTGCCAATGTTTCTCAGCATGTTCTTCTCggtttgtgttttgtgtatcCAGAAGGCCATTTGCACTCGGTATGCCTCTAGATTTATAGGTTGCCGTTAAGTATTAAGGGAATAGTTTAATACACAAAACGAAAAATGCACTCACTTTCAAGTGGTGTCAAACCTTTTTGGGTTTCTTTTgtctttctgttgaacataaaagaatgctgaaaacctgtaaccattgacattcatagtagattagaaaatacagtggaagtcaatgtttaaagCATTCTTCGAAGTATctcctttagtgttcaacagaagaaagtcaaacaggtttggaacagatgctgaaacaacacaattgtggaggtttttttgggacaacttaattgttttatgttcaatccacttcagttTATTaagcttaattgatttgtgtgtgATGATCTGGATGAAGAAAACGGTAATGATGCAAGGTTTGTGCAGGCCAGCTCATCCACTGCCAATGTTTCTCAGCATGTTCTTCTCTGTTTAAGTTTTGTGTATTCAGAAGGACATTTGCACTCCGTATGTCTCTAGATTTATAGGTTGGCATCAAGTATTAAAGGACTAGTGCATTTTTCATTATGGGTATTAAACCATTTACTCActttcaagtggttttaaacctttatgagtttgttttgtttttctgttacatgaaagaagatattttgaagaatgctgaaagcctgaaaccattgacattcatagtacattaaaaatactggaagtcaatgattcaagcattcttcaaaatatctccttttgtgttcagcagaggaaagtcaaacaggtttggaacaagtacaCTTAAAACGCTTGTTCAGTCTACTTACTTAATATGAGCTGAAAACAATTCTGTTGGCTTTTTTTAGGATAACCCAATTGTTTTacgttcagtccacttaaatttatcaagcttaattgatttgtgttgggacaacatgaatgaattgtgtggagccctgcagtgtaaaatgtgtgtaaataatttGAAGTTTTggctaaactatccctttaagactgaATTGAAGATATACAGACCAAAAAGCATCGGTCCAGATCTTGCTAATTCCTCCATTTGCTTTTTGTGGTtcctattaaaatgttttaacattgAGTTATTTTCATTGAAAGATTGGAAACAAGTGTTCATGTTCCTTCTGATATTTGCACAAACACGTTCCTCACTGCAGGCCAGTGGTTTGCGTGAACATGCCAAAACGATCTCTTTTTCCTAATGTTCTCTGAACGTGCCTGCTCTCCGTTGACACTACCAAATGCTGTTATTGACTGTTCTTTTTGTTTTGCTCCTCtttttgttggtgtttttttttttatctgaggaACTGATAAGGTTGtatgattttgattttaataaatttatttattatgc
>TCONS_00009880
TTCAAAACGTGCGTCTTTGGCATCAACAGAAAGGACAATGTAGTTGTTGGATATATATTTGGCAACGCGCAGACGCAGAGGTCATTATAAACAACCCAAGACAGCAGAGATGATGCACAACTGAACAACAGAGAGTTTGAGCTGCTGAAACCAAAGATATGCGTGAAACTTTATAATAAACAGCGGAAACTGACTGAACATATGAGCTCCAGAAGCAGAAGAAGTCAAGCAGGAACAATAAGGCTTGTGTGATTCATGCTGATTTCTACTCGACGAAAAGCTGCTGAAATCACCGACCCAGCCTTCGCCTGCGGATTATTTCAGCCTAGCATGATCTATACTGATTTCTGTGGTTTCACCGGTTTAAAAGTCTGGAAAATGAGGAGTATATTGACCCGAAACCAGTCCGACCGCTCTCGAATGATGCACTGAAGATGGGCTCTGCAGCAGTGAGTCAGGCAGGCGCGGGCGGTTGAGCTGGCGTTCAGCATTGGAAGAATGCACTTATCCCATGTCGGCTCCAACAAAACCTGCTTTCTGCTTTCCCTCGCATTCTGTGCCCTGCTGGTGCTGCTTATTCCCTCCTTACAACCTCCACAGCGTCAGGCGGATCTGCCTCAGCCGCGGCCCCATGCCAAACCCGCCAAACACCCACTCAAAAACTCTCTCTACAGACCAAATGAAGACACCAGGGGTGGTAGTTTTACTCAAACAACTCCACCTGAGAACCTGCAGAAGATGGACGATCTAAACTCGCACTACAGAGACTTCCTGGACTTAAGAGACATTTTTATTGCTGTGAAGACCACTAGGAAGTATCACAAGTCCAGATTGCAGCTCCTGTCCCAGACCTGGGTGTCCAGAGCGAAGGAGCAGACGTTTATCTTCACTGATGGGGAGGACAAGGAGCTCCGGCTGAAAGCAGGGCTGAACATCATCAACACCAACTGCTCGGCGGCTCACACACGCCAAGCCCTGTGCTGCAAGATGTCTGTGGAGTATGACAAGTTCATCGAGTCACAGAAAAAGTGGTTTTGTCATGTGGATGATGATAACTATGTGATCCTGCCCAGTCTACTGGAGCTTCTGTCCTCGTACTCTCACACACAGGATGTGTATCTGGGCCGGCCTAGCCTGGATCATCCTATAGAGGCTGCAGAGAGAGTCAAGAGCGACGGATCGGTGTCAGTGAAGTTCTGGTTTGCCACTGGTGGAGCTGGTTTCTGCATCAGTCGAGGTTTAGCGCTCAAAATGAGTCCATGGGCCAGTCTTGGAAACTTTATCACAACAGCAGAGAAGATCCGTCTGCCAGATGACTGTACAATTGGCTACATCATCGAGGCGCTGCTGGAGGTTCCTCTCACCCACACAGGCCTGTTTCACTCACACCTGGAGAACCTGCAGAGACTGCCTGCAGAAAACATCCTGCGACAGGTGACCCTCAGTTATGGTGGATTCGAGAACAGGAGGAATGTGGTCAGTGTTGGAGGAGCGTTTTCATTGGCTGAAGACCCAACACgGTTTAAAACGGTTCACTGCAAGCTCTACCCAGACACCGAGTGGTGCCCACGCAAGACTCGCCATTGACGTCTGGTATACGAATGCATCATCATGGAGCATCAACTTTCTCATGCTTTCCACAACACTATCTATACCAAAGGAACAGGCAGAATAACTGAGCACAGATTGTGATGGTTGCAAATAAGAAACGCTAGTTAGATCACATTCACAGACTACAGTATGTTGTATCTCCTTTGCCAgaacaaaaatctaaacaatcTTAAACCAACATACATTTACTTAAGCAGAAGAAGAACATATCTCAAAGTGTCTTTCAGTTGGTTTTCATTTATAAACATTGATGTTTTCTCCTGTTTTTAACACAAACTTATGATTGAAGTGATGTGCTGCTCATGTAAATGTATGGGGATTTAAGATTTGTGGTATTTTTATAATGGGAGACAAGACTAATATTgagcaagaaaatgttttttCATTGTATCTGGTACTTTTAAATGAAGAAACAGGGTGGCTGACACTCTTTTTCCTCTTGAAATACTGCGTTCTGAGAACTGCCAAGTGATTTACATAAAGCGAGTCCCTTTCATAAGAGCGTTTCGAAAGGATTGCGCAATTATTTTCTTACTGAAATGATTTTATCCACATTTTTTGTGGCTTTGACATCATCTTTATTGAGTTGTCCTTTTCCTAAAGGCCATAAATATGCCCAGCACAGCCCTTTAGATTTGTGTGCGATGATCTGCAACGTCTCCAGGGATGAAGAAAACTGTATTGATGCATCATCTTAGCATTTTGTTTGCAAGATTTATGCAGGCCAGCTCATCTGCTGCCAATGTTTCTCAGCATGTTCTTCTCggtttgtgttttgtgtatcCAGAAGGCCATTTGCACTCGGTATGCCTCTAGATTTATAGGTTGCCGTTAAGTATTAAGGGAATAGTTTAATACACAAAACGAAAAATGCACTCACTTTCAAGTGGTGTCAAACCTTTTTGGGTTTCTTTTgtctttctgttgaacataaaagaatgctgaaaacctgtaaccattgacattcatagtagattagaaaatacagtggaagtcaatgtttaaagCATTCTTCGAAGTATctcctttagtgttcaacagaagaaagtcaaacaggtttggaacagatgctgaaacaacacaattgtggaggtttttttgggacaacttaattgttttatgttcaatccacttcagttTATTaagcttaattgatttgtgtgtgATGATCTGGATGAAGAAAACGGTAATGATGCAAGGTTTGTGCAGGCCAGCTCATCCACTGCCAATGTTTCTCAGCATGTTCTTCTCTGTTTAAGTTTTGTGTATTCAGAAGGACATTTGCACTCCGTATGTCTCTAGATTTATAGGTTGGCATCAAGTATTAAAGGACTAGTGCATTTTTCATTATGGGTATTAAACCATTTACTCActttcaagtggttttaaacctttatgagtttgttttgtttttctgttacatgaaagaagatattttgaagaatgctgaaagcctgaaaccattgacattcatagtacattaaaaatactggaagtcaatgattcaagcattcttcaaaatatctccttttgtgttcagcagaggaaagtcaaacaggtttggaacaagtacaCTTAAAACGCTTGTTCAGTCTACTTACTTAATATGAGCTGAAAACAATTCTGTTGGCTTTTTTTAGGATAACCCAATTGTTTTacgttcagtccacttaaatttatcaagcttaattgatttgtgttgggacaacatgaatgaattgtgtggagccctgcagtgtaaaatgtgtgtaaataatttGAAGTTTTggctaaactatccctttaagactgaATTGAAGATATACAAACCAAAAAGCATTGGTCCAGATCTTGCTAATTCCTCCATTTGCTTTTTGTGGTtcctattaaaatgttttaacattgAGTTATTTCCATTGAAAGATTAAAAACAAGTGTTCATGTTCCTTCTGATATTTGCACAAACACGTTCCTCACTGCAGGCCAGTGGTTTGCGTGAACATGCCAAAACGATCTCTTTTTCCTAATGTTCTCTGAACGTGCCTGCTCTCCGTTGACACTACCAAATGCTGTTATTGACTGTTCTTTTTGTTTTGCTCCTCtttttgttggtgttttttttttgataaggttgtatgattttgattttaataaatttatttattatgcaga

Function

symbol description
rfng Predicted to enable O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity. Acts upstream of or within brain segmentation; fourth ventricle development; and rhombomere boundary formation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Is expressed in hindbrain. Orthologous to human RFNG (RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase).

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0030154 cell differentiation biological_process
GO:0035284 brain segmentation biological_process
GO:0021592 fourth ventricle development biological_process
GO:0007275 multicellular organism development biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0008593 regulation of Notch signaling pathway biological_process
GO:0007389 pattern specification process biological_process
GO:0007399 nervous system development biological_process
GO:0030902 hindbrain development biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0030173 integral component of Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0046872 metal ion binding molecular_function
GO:0033829 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5418 Predicted to enable O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity. Acts upstream of or within brain segmentation; fourth ventricle development; and rhombomere boundary formation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Is expressed in hindbrain. Orthologous to human RFNG (RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase).

Ensembl:

ensembl_id ENSDARG00000019746

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009879 False 3772 mRNA 0.42 10 3054442 3077395
TCONS_00009880 True 3762 mRNA 0.41 9 3058989 3077395

Neighbor

gene id symbol gene type direction distance location
XLOC_005078 dcxr coding downstream 560 3043308 ~ 3053882 (-)
XLOC_005077 si:dkey-202c14.3 coding downstream 61347 2951186 ~ 2993095 (-)
XLOC_005076 fam20a coding downstream 114372 2906610 ~ 2940070 (-)
XLOC_005075 zdhhc16b coding downstream 184858 2849584 ~ 2869584 (-)
XLOC_005074 ubtd1b coding downstream 253583 2780190 ~ 2800859 (-)
XLOC_005080 col1a1b coding upstream 18304 3095699 ~ 3133483 (-)
XLOC_005081 si:ch1073-13h15.3 coding upstream 142890 3220285 ~ 3237561 (-)
XLOC_005082 gngt2b coding upstream 171659 3249054 ~ 3252263 (-)
XLOC_005083 NA coding upstream 204361 3281756 ~ 3284909 (-)
XLOC_005084 lsm12b coding upstream 210388 3287783 ~ 3299149 (-)
XLOC_005073 NA non-coding downstream 309801 2703355 ~ 2744641 (-)
XLOC_005072 NA non-coding downstream 384942 2625669 ~ 2669500 (-)
XLOC_005071 CU929359.1 non-coding downstream 436932 2579237 ~ 2617510 (-)
XLOC_005069 NA non-coding downstream 574511 2067963 ~ 2479931 (-)
XLOC_005068 NA non-coding downstream 1052618 2000636 ~ 2001824 (-)
XLOC_005086 NA non-coding upstream 441773 3519168 ~ 3544016 (-)
XLOC_005087 NA non-coding upstream 492352 3569747 ~ 3570081 (-)
XLOC_005092 NA non-coding upstream 705226 3782621 ~ 3786382 (-)
XLOC_005094 NA non-coding upstream 783069 3860464 ~ 3865234 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_06312165_06320684 NA coding CI01000047 null 6311168 ~ 6321500 (-)