LOC120556547 (LOC103359454,LOC102294290,LOC100700192)


Basic Information

Item Value
gene id LOC120556547
gene name LOC103359454,LOC102294290,LOC100700192
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19535697 ~ 19545656 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796192.1
TGGTACAACAGTGTCTTGCTTGTGAACAGTCTTTGCGCCAGTCATCGCCTGGTAGCTGTGCACCATATAGAGTATAGCTACAGCTGGCTATTTACACATACGTGACAGGATCATTGCATTTGCAGATGTGAAATCTGCCGGCTTTAGACTTTGACTCGATCATATAGCCTATCGTTTGTGCGCACGGAAACACCGAAAAGTATCAAAAACAATGGCAATCCTGAATCATTTTGCGACAGCAtgctggaagaacatgcaagGATATCGGCTAAATAAGCAGTTGTTTGTCTTTTTACGCGCGTTGCACAAGTCAACAGCAAGAGAGGAATTTGGGATCTCCGCGGCTGGAGAGAAGGCCATGCCTGAAAGATTGACCACACCGGCGGATGTCGGCAAGAAAACCAGACTCAAGACCCTGAAGGAGATGCCAGGACCCAGCGCCCTGTCCAACTTCATCGAGTTCTTCTGGAGAGACGGGTTTAGCAGAGTTCATGAAATCCAGATGGAGCACAGGAAGAAGTATGGCAAAATATTCAAATCCCGTTTTGGGCCCCAGCTGGTGGTCTCAGTGGCAGACCGTGACCTGGTGGCTGAGGTGCTGAGGGCCGAGGGCGTGGCCCCTCAGAGAGCTAACATGGAGTCCTGGAAGGAGTACAGAGACATGAGAGGCCGTTCCACTGGCCTCATCTCAGCTGAGGGAGAAGATTGGCTAATGATGCGGAGCGTGCTGAGGCAGCTCGTCATGCGTCCCCGTGATGTAGCGGTCTTCTCTGATGATGTGAACCAAGTGGTAGATGACCTCATCAAGAGAGTTGCTATTCTCCGCAACCAGGAGTCTGACGGAGCAACTGTTCTCAACGTGAATGACCTCTTCTTCAAATATGCCATGGAAGGTGTGGCAGTCATTTTGTACGAGTCCCGACTAGGCTGTTTGGAAAATCAGATTCCCCAGGAAACCCAAGACTACATCGGTGCTCTGCACCTCATGTTCAGCTCCTTCAAGACAACCATGTATGCCGGGGCGATCCCCAAGTGGCTCCGACCGGTCATCCCCAAACCATGGGAGGAGTTCTGTTTCTCCTGGGATGGCCTCTTCAAATTCAGCAGTATTCACGTTGATAAGAGGCTCGCAGAGATTAAGGCCCAGctggagaggggagaggaggtgaAGGGGGGACTGCTCACACATATGCTCATTACCAAGGAGATGAGCACTGAGGAGATCTACGCCAATTTTACGGAGATGCTACTGGCTGGGGTCGACACGACATCCTTTACTCTTTCATGGGCCTGCTACCTGTTAGCGCGGCACCCTCAAATACAGCAGCAAATCTTTACGGAAGTGACGGAGACCCTGGGACCTGGAGCAGTTGCCACAGCAGACGATGTCCCTCGTCTGCCTCTCATCAGAGGGCTGGTCAAAGAGACACTCAGGTTTTTTCCAGTTCTCCCAGGCAACGGACGGATAACCCAGGATGACTTGGTGGTGGGCGGATACTTCATCCCCAAAGGGACTCAGTTGGCCCTTTGTCACTACTCCACATCTTTTGATGAAGAGAACTTTGGCGATGCATCAGACTTCAGACCTGATCGCTGGATACGGAAAGATTCCACAGATCGTGTCGACAACTTTGGCTCGATTCCCTTTGGCTACGGCATCAGGAGCTGCATCGGCAAGAGAATAGCAGAGTTAGAGATGCATCTAGCTCTCACAAGGCTCATTCAAAAGTTCCACATTGGAGTGTCTCCGCTTACTACTGATGTCAAGGCCAAAACCCACGGCCTGCTCTGCCCTGCTGCCCCCATCCACCTGCAGTTCATCGACAGGGAAAACTAGACTCCGACTCCTCTCCATAAGGTCTACTGtactttgtttttaaagtgctgaTTCGTGTGTATTACCTCCTCCTGTTCGTTAGTGAGGACACAAAATGAGTGTGGGACCAGTAAAAATAGATTCATACTAATGTGCATACATGTGTGTTATAATGTGTGAACACACATTAATACATAATCACACTGTTTCCTCTTAAGAAAAAACTGtttataatatttttaaatgtaaacaaattcTAGGAAAAATGCTTTTAGCTTTTTTATATGAAGGGACTTTGATCATCCTGTGAGATGGAACTAAAGAATGATTTATAAACTAAAAAGTAGATTATTTGCTCAACtaatgaaatatatatttttttacactaCGCTCGGATCAATAAATGTGTTCAGTGTT

Function

NR:

description
PREDICTED: cytochrome P450 27C1-like

GO: NA

KEGG:

id description
K17951 CYP27C1; all-trans-retinol 3,4-desaturase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796192.1 True 2233 mRNA 0.48 9 19535697 19545656

Neighbor

gene id symbol gene type direction distance location
LOC120556555 LOC103359454,LOC102294290 coding upstream 1884 19528085 ~ 19533813 (+)
wdsub1 wdsub1 coding upstream 76698 19446170 ~ 19458999 (+)
baz2ba baz2b coding upstream 91028 19373981 ~ 19444669 (+)
ly75 NA coding upstream 193120 19308338 ~ 19342577 (+)
pla2r1 pla2r1 coding upstream 229785 19277153 ~ 19305912 (+)
rbm26 rbm26 coding downstream 3698 19549354 ~ 19561725 (+)
obi1 NA coding downstream 60467 19606123 ~ 19613725 (+)
pou4f1 pou4f1,LOC103143517,LOC106914826 coding downstream 69189 19614845 ~ 19617452 (+)
LOC120555422 pcdh20 coding downstream 896743 20442399 ~ 20446773 (+)
LOC120555780 diaph3 coding downstream 958442 20504098 ~ 20692974 (+)
G28590 NA non-coding upstream 23955 19511014 ~ 19511742 (+)
LOC120555526 NA non-coding upstream 35474 19496214 ~ 19500223 (+)
LOC120556586 NA non-coding upstream 37473 19498093 ~ 19498224 (+)
LOC120556587 NA non-coding upstream 37824 19497738 ~ 19497873 (+)
G28580 LOC103359460 non-coding upstream 49172 19486270 ~ 19486525 (+)
LOC120555794 NA non-coding downstream 425563 19971219 ~ 19972240 (+)
G28696 NA non-coding downstream 568331 20113987 ~ 20114360 (+)
G28721 LOC103376870 non-coding downstream 810416 20356072 ~ 20356354 (+)
G28745 NA non-coding downstream 1033486 20579142 ~ 20580115 (+)
G28776 NA non-coding downstream 1231887 20777543 ~ 20777816 (+)
ercc3 ercc3 other upstream 15479 19512356 ~ 19520218 (+)
G28581 NA other upstream 48164 19487246 ~ 19487533 (+)
LOC120555697 NA other upstream 448633 19074308 ~ 19087064 (+)
LOC120556478 LOC103360749,LOC104942123,LOC102301404 other upstream 959755 18561873 ~ 18575942 (+)
LOC120555788 NA other upstream 1792249 17724545 ~ 17743448 (+)
LOC120555792 pcdh9,LOC102784100 other downstream 226463 19772119 ~ 19993954 (+)
G28770 NA other downstream 1165448 20711104 ~ 20761147 (+)
G28826 NA other downstream 1850557 21396213 ~ 21403450 (+)
grk1a grk1 other downstream 1875454 21421110 ~ 21433147 (+)
tpp2 tpp2 other downstream 1979936 21525592 ~ 21562814 (+)

Expression


Co-expression Network