tradd (tradd)


Basic Information

Item Value
gene id tradd
gene name tradd
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 27490013 ~ 27499955 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796210.1
caccaatcagagagttctttgattccagctcgGCCAATGGGAGGCCAGGAAGTTATTACCGTGTCAGTGGGTGTGATCCTGCAGAAGGAAGCGTTACTGAACAATATATATCAAAGTTTTAAGAGGATGGCAGACAAGACTGTGGATCGTGGGCCATGGACTGGATGTGCGGTTATGTTTCTGCAGTCGCTCTGTCCTGGTGTGAACCTGCTCTCTCTCTACAAAGACCGAGAACAGGGAAAGTTCATCGTTTTTAAAGTCATTAAGCTGACACTTACAGATTCTGCAGGAGGTCTGGGTGGTTATGAGATCCTTAAGGTCCATGACGCTGATCCCTTTCTGGGGGTGGAGGTGAAGTTTGAGGATGTGGCAGCATGTCAGCAGTTCCTCGAGAGCTACAGCTCTGGAGCGGTGCGTCAGTCCCTCTCGCAGCACGCCTGCCGGCTTCTTGCACTCAGCCAAGAGTTCACAGTGGAAACTCAGCTCAAGGCCAGCACTCACATCCTGGATCTTTATCTGGACAAGCTGgagctttgcctgcagcacATCCACCTGTCACAGCCGGAGCGCCTGCGCGATGAGGAGATTGATCATCtggagcagcagctgcagactCAGGCCCTCCGCCCAGCCCCACAGTCGACCCCTGTTACACAGGAAGAGTCTCCGGTCCCCAGCAACAGCTTCAAATTTCAGAATAAAGTCTTCGAGGACCGAATGCTGACAGCAACAGACGTTCAGAGCTTTTCTAACGGAGTGGGCCgtcagtggaagcatgtagggAGGGCCTTGGGGAAGAGCTGCCGGGCTTTGAAGGGTCCGGCCATAGACAACCTGGCCTACGAGTATGAGAGAGAAGGCCTGTATGAGCAAGCCTATCAGCTGCTGAGCCGCTTCATCCAGGCGGAGGGCAGAGCGGCCAAGCTGAGCCGGCTGGTCAAAGCACTGGAGGACTGCAAACTCACCAGCCTGGCTGAAAATATTCTGGACATACAGCCACGAGAGTAACTCTGTGTGCTTTTGTTTCATGTGTACGCATCGTGAAAACTGAGGAGCGGGTGACTCTGTCCTGCCTGCttttacagtatgtttgttATTGATTGACTGTCTGTCATTCAAAAccattcctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgagagagagagacgtgttTCAGACTTGATTCATATCCTGATTTGcttttcaatttttattttcatttagagGAAATTATCTGTCATCACTGTTTAAAAGATATACTATCTTGAGTTTAATGCACTGTTTAAACCTCTTTCGTTTGTGCTTTATAAGTCAATTTACAGATGAATCCTTCCACAACTGAAGGTTattgaggtttttttttctacaaaatgGGTGCATACAAATTAaatggttgtaaaaaaaaaaaaagtctttatgt

Function

symbol description
tradd Predicted to enable transmembrane receptor protein tyrosine kinase adaptor activity. Acts upstream of or within positive regulation of apoptotic process. Predicted to be located in cytoplasm; cytoskeleton; and nucleus. Predicted to be part of tumor necrosis factor receptor superfamily complex. Orthologous to human TRADD (TNFRSF1A associated via death domain).

NR:

description
tumor necrosis factor receptor type 1-associated DEATH domain protein isoform X1

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K03171 TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796210.1 True 1518 mRNA 0.48 5 27490013 27499955

Neighbor

gene id symbol gene type direction distance location
nudt21 nudt21 coding upstream 18004 27467865 ~ 27472009 (+)
rab27a rab27a coding upstream 64311 27410828 ~ 27425702 (+)
ccpg1 NA coding upstream 86699 27391122 ~ 27403314 (+)
prtga prtg,LOC102785529 coding upstream 100646 27356268 ~ 27389367 (+)
mns1 mns1,LOC102786898 coding upstream 202457 27281412 ~ 27287556 (+)
gnao1b gnao1,LOC103374184,LOC101483250 coding downstream 1211 27501166 ~ 27509230 (+)
thap11 thap11 coding downstream 48499 27548454 ~ 27552229 (+)
nrn1lb nrn1l,LOC101167108,LOC107381583,LOC103366277 coding downstream 55238 27555193 ~ 27560381 (+)
slc38a8b LOC104927248,LOC103366290 coding downstream 63449 27563404 ~ 27570646 (+)
cmtr2 cmtr2 coding downstream 78147 27578102 ~ 27585443 (+)
G30364 NA non-coding upstream 2416 27486804 ~ 27487597 (+)
G30287 ctcf,LOC103374180,LOC104965832,LOC102192328 non-coding upstream 34042 27451338 ~ 27455971 (+)
G30280 NA non-coding upstream 190446 27298829 ~ 27299567 (+)
G30235 cgnl1 non-coding upstream 358105 27130176 ~ 27131908 (+)
G30148 aqp9 non-coding upstream 460459 27016958 ~ 27029554 (+)
G30423 NA non-coding downstream 136904 27636859 ~ 27637082 (+)
G30428 NA non-coding downstream 163245 27663200 ~ 27663466 (+)
G30461 NA non-coding downstream 311173 27811128 ~ 27811547 (+)
G30518 NA non-coding downstream 397722 27897677 ~ 27898381 (+)
LOC120555388 NA non-coding downstream 597778 28097733 ~ 28108311 (+)
G30366 NA other upstream 1222 27487677 ~ 27488791 (+)
ogfod1 ogfod1,LOC102779874 other upstream 3244 27473665 ~ 27486769 (+)
G30295 NA other upstream 22992 27465778 ~ 27467021 (+)
LOC120555924 LOC103398348,LOC104965831,LOC103374185 other upstream 25254 27456416 ~ 27464759 (+)
vrk3 NA other upstream 49599 27426288 ~ 27440414 (+)
LOC120555373 LOC102214634,LOC101478275,LOC102310185,LOC103366289 other downstream 300513 27800468 ~ 27807464 (+)
LOC120555397 LOC100695720,LOC100703698,LOC102797576,LOC101469320,LOC102211850,LOC101061652 other downstream 460965 27960920 ~ 27963055 (+)
mvda mvd other downstream 469943 27969898 ~ 27975301 (+)
G30631 NA other downstream 917402 28417357 ~ 28417812 (+)
cmc2 cmc2,LOC102791261 other downstream 970917 28470872 ~ 28477283 (+)

Expression


Co-expression Network