irf8 (irf8)


Basic Information

Item Value
gene id irf8
gene name irf8
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 28199110 ~ 28203878 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039796242.1
AGTCCATAGGCATATGTCAGAGAGAACTCACTTGATTAAAGCTGACAGTGAGCCATCAATCAACATCGCAGGATATCCCAAGCAGGGCAAAGACCTCAACCGCTTGTTAAACTGTACAAGGGAACAATCCGAAAACAACTTTTCTCCATCGGGATGTCAAACCCGGGAGGTCGGAGACTGAAGCAGTGGCTGGTGGAGCAGATCCAGAGCGGGCAGTACTCTGGACTGCAGTGGGAGGATGACAGCCGCACTATGTTCCGAATTCCATGGAAACACGCAGGGAAACAGGATTACAACCAAGAAGTAGACGCATCCATTTTTAAGGCCTGGGCTGTGTTTAAAGGCAAGTTTAAGGAGGGGGACAAGGCTGAGCCTGCAACATGGAAGACCAGACTCCGCTGTGCCCTGAATAAAAGCCCCGATTTTGAGGAGGTGACAGAAAGGTCGCAGCTGGACATCTCTGAGCCCTATAAAGTCTATCGCATTGTACCAGAGGAAGAGCAGAAGCATGGCAAAGTCTCAGTGATGGTCATGGCATCTACCACCTGCTCTGGTGATATCCCTGACATGGACTGCAGTCCTGCAGAGATAGAGGAACTCATTAAAGAGGAGGAAGGCTGTAGTATCCAGGCCAGTCCAGAGTATTGGTCCCCGGGCAGCATCAACGCTTTCCCCTTGCATCAGGACCCTTTGCCATCAGGCAATGTCAACTCAGCTTTCTCCCAGATGATGATCAGTTTCTACTATGGAGGAAAGTTGATGCACACCACACCGGTTACTCATCCTGAAGGCTGCCGGATCGCCCCACAGCAACTGGGCCGTGGCGCCCTATACAGTTCAGACAGCATGCAGAGTGTTCATTTTCCTCCGGCTGAGCACATCGAGTACGACCGCCAGCGCCACGTTACACGCAAGCTCCTGGGCCACCTGGAGAGAGGTGTACTGGTCCGTGCCAACCAAGAGGGCATCTTCATCAAAAGGCTGTGCCAGAGCCGTGTTTTCTGGAGTGGGCTGGGAGAAGTGGGCTCACAATACAGCCCCATGCCTTCTAAACTTGAGAGAGATGCTGTAGTCAAGATTTTTGACACAGGAAAGTTTCTCCAAGCTCTACAGCTGTACCAGGAGGGTCAGTTTCCTGCTCCTGATCCGACAGTGACTCTGTGTTTTGGAGAAGAGCTCCATGATCTCAGCAATGCCAAGAGCAAACTGATCATAGTGCAGATCACTGTGGTGAACTGCCAGCACCTGCTGGAGGCAGTGAACATGCGGCGCTCCCAGCCCTACTGCAACAACCCAAACCTGGAGATGTCTGATAATCTGGCCAGTGACCAGATGGCCCGCATCTACCAGGACTTGTGCAGCTACAGCGGCCCCCAGAGGCCAGCCTGTTACAGAGACAACATGTCCATCACTGCCTGAACTGTGATCAGCAACACACCTGCCTGGAGCTCTACAGCTTGTACCAGACTCAATGTACAATGTATTAGGGACATTCCTTATTTTCCTGACATAGACTGACAAGGTGAATTTGGATAAACACCAGTATCACAgttattttagactttttattaaatgtatacCAATCACAGTGGAGACATAAATATAAGGAGAAGCATATCTCTTATAGTAAGACTTTTAAGCTGCAGTTCAGTATTAAGATGTCCCTAATATGTTGTATATCAGTAATGTTTATGTTTCTTATATGTAAAGCGCTAACACAATCTCTGTGTCTAACTTCTGCTTTTCAATTATAAGAGTGTTATCATCTAGCTCAAGAGAAAAAGTGGTATTATGTTGTTGTTATACACAACTTTTGTAAAGCCTTAAGAACAGATCCATTTTGGTGACTTTCTTGACAAATATTTCTTATATATATGTAAAGACATCTGTGCAGTATGACAACAGTTTGATATATGCAATTTAGTTCTCAAAGCtgaattttattttgacatgcagcatcttttttgtttttgcagttgAGTTGATTCCTTATGTGATGACCAAATGAATATTTTGTCagatatttttctattttttacaaGTTGATGAATTGATAAAAGATTTCATTGAATTTTAGATGCAATGTGGCATTAAATGACAGATAGGTTTTACTATCATACTGTTTTTATAAACTGCATTTTTAGTAAAGTTTGTGCTGAACTACA

Function

symbol description
irf8 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within microglia development; regulation of macrophage differentiation; and regulation of neutrophil differentiation. Predicted to be active in nucleus. Is expressed in brain; eye; hematopoietic cell; hematopoietic system; and yolk. Human ortholog(s) of this gene implicated in immunodeficiency 32A and immunodeficiency 32B. Orthologous to human IRF8 (interferon regulatory factor 8).

NR:

description
interferon regulatory factor 8-like isoform X5

GO: NA

KEGG:

id description
K10155 IRF8; interferon regulatory factor 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039796242.1 True 2165 mRNA 0.45 9 28199110 28203878

Neighbor

gene id symbol gene type direction distance location
foxf1 foxf1 coding downstream 101963 28093058 ~ 28097147 (-)
trnal-uaa_2 NA coding downstream 318897 27880131 ~ 27880213 (-)
LOC120556190 LOC104927843,LOC104965371,LOC100704236 coding downstream 327853 27863663 ~ 27871257 (-)
kif7 kif7 coding downstream 343523 27841587 ~ 27855587 (-)
si:ch211-122f10.4 LOC104945215,LOC102776050,LOC102212265,LOC101480742 coding downstream 544702 27649504 ~ 27654408 (-)
dusp22a LOC104927513,LOC103374648 coding upstream 1848 28205726 ~ 28224206 (-)
LOC120555377 LOC101062555,LOC102216107,LOC102302772,LOC101473643 coding upstream 21746 28225624 ~ 28227538 (-)
gse1 gse1 coding upstream 35652 28239530 ~ 28420256 (-)
atmin atmin,LOC102791907 coding upstream 253522 28457400 ~ 28464778 (-)
cenpn cenpn,LOC102790979 coding upstream 262147 28466025 ~ 28469643 (-)
G30586 NA non-coding downstream 160903 28037134 ~ 28038207 (-)
G30579 NA non-coding downstream 180035 28011000 ~ 28019075 (-)
G30576 mc1r non-coding downstream 197682 28001197 ~ 28001428 (-)
G30551 LOC102797876,LOC102077336,LOC101469017,LOC102307906,LOC103372225 non-coding downstream 241486 27956247 ~ 27957624 (-)
G30519 NA non-coding downstream 300725 27897943 ~ 27898385 (-)
G30634 NA non-coding upstream 21215 28225093 ~ 28225447 (-)
G30644 NA non-coding upstream 138822 28342700 ~ 28392518 (-)
G30691 NA non-coding upstream 464720 28668598 ~ 28668964 (-)
G30759 NA non-coding upstream 936476 29140354 ~ 29140638 (-)
G30852 pax6 non-coding upstream 1182879 29386757 ~ 29396683 (-)
dbndd1 dbndd1,LOC103136566 other downstream 125631 28046759 ~ 28073479 (-)
G30577 mc1r other downstream 196640 28001640 ~ 28002470 (-)
G30465 furin,LOC102777676 other downstream 427300 27766831 ~ 27771810 (-)
G30422 got2 other downstream 565488 27626893 ~ 27633622 (-)
G30319 NA other downstream 882952 27310171 ~ 27316158 (-)
LOC120555801 LOC103366895,LOC102194278,LOC102079963,LOC102301182,LOC101475385,LOC102792507 other upstream 244078 28447956 ~ 28550000 (-)
G30693 NA other upstream 465313 28669191 ~ 28669868 (-)
mafa maf,LOC101477682,LOC100702616,LOC102790406,LOC102298902,LOC104927625,LOC102192535,LOC105919746 other upstream 566123 28770001 ~ 28846965 (-)
LOC120555471 hipk3 other upstream 1013975 29217853 ~ 29269183 (-)
prrg4 NA other upstream 1106672 29310550 ~ 29314709 (-)

Expression


Co-expression Network