LOC120555431


Basic Information

Item Value
gene id LOC120555431
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15818610 ~ 15848699 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638712.1
catattaatgttaaaaaacctcataaagtgaaattttcatgccatgggaccattAATGTTTTATACAACCAGGTAATCACTCAATATGCTCTCTGGGCAAATACAATCAATCAACTTTAGAATGCCATTGCCAATTAAACTTGACATAGAcacaaataattgttttttttctccaaaatctGATAGTTATTTTTGGGTTTTCTGAGGTGTTATTGGAGCTGGCTCACCAACATCcttgtttagatttttttccagCTGTGAGCAgctctttcatttcatttcatttcgtTGCTTTGTGGGAGAATATTGTCTACAACAGTACACTCACAAATCTAGTGCTTTTTAGTATGAGTCCTGTCTATTTAGCCATGCTGGTTtcggtcagtccaccactttgattcagactgaaatatcccAACAAACAAATTTTCATCTGCTGACCTTGGTGATTCCGTGACAtcttcctctagcgccaccatgaggtttacatttgttttttttcagtgaaatgtctcaagaATTATTGGAAATTTGCCCCTTTCGGGTTATCctgcacggcagctggattctcacgAGATCACGCTACAATCGTGTGATCACATATCACACGATAATCCATACGTCATGCTTCAAGTAATGCTTTTTGTGTCTGAACTCCCAACTAActgaaccaatcagcgtccGGTGAGGAGCTACTAGCAGCTACGGGCGTGGTTTAGGAGCGTGTGACAGCCGCGACTGTTCGTTCAAAACAACCAGGGGTGTCAGACTGGGAGTGGAAAGGGCCTGAGTGCTCAGGgcccctcatgtgaggaggacCCAAAAAGATGCttgaatgaatagctgtggatgtggggagaGGCCCATAGAATAtgtctttctacagggcccagaacgTTATGCTACGCCCCTGAAAACAACAATGGTGGACGTGATAGACGGATGGTTCATcgaatcacctgccaggtatttttttttaaagtgcctgccctttctaaacagtttccaatgacggcttctcagatcATTCAGTTTATCTCTCAGGACCATGAGGTAAAATTTTCTTATGACCATCTACTGCAAAACTAATTACATTTCTGTCAATCTGTTGTCCTATCCATGCAAAAACAGTTAGTCAATACATTGCAATTTTAAGCTCTTGTGCCGTGCCACTTTTCATGTAATACCACCTGTATTAGGGCACAGGGCACTGCACAAGAGCCTGAAAATCGTGCCCAATGTTCAGCCAATTTCcaacactatttatttctgataATCCCACTTACTGTGCAAATCTTTATATGTGGCTCTTGAAAAGCAAATCACAGTAATCATCTGTCACAAGGTCAGTCCTGCTTTTCCCCCATTCTACTCCTGTCACTCCTTTCAGCCACCTCCTCATTTCCGCAGCACCCTGCAGTGCCATTTTCCACCCATCCACCAGATGCCCTAAGACTTTTCCACTCATCCCAATCAACTGACCCTCTCATTTACCTGCTCACCTGTTTCCACTTTCTCTCATCAGCCCTGCAGTGTATTATCGGCGCATTTCATTTTCCCTGCCAGGTTGCCAGTGTTTCTACATGGCTTGTTTTCCAGCGACCTGAACCTGAATCCTAAACCCTGGAATCTGGAACCTGGAACCTGTACCTGCCTAGTCAGCGCTGGGGAGAATAACAGCAGGTTGCAGTGCCAGAGGTGAGCAAGGTGACAGCAGTGAAGCAGACGTTCGCGTTGCTGCTACTCCATTATCTGTCACACTGATTCCCCAGCAGACTCCAGCAGTCTCCAGCAGGCTGCAGCTCCTTCAGTTAACATTTCCAGCTGCCCTGAG
>XR_005638713.1
catattaatgttaaaaaacctcataaagtgaaattttcatgccatgggaccattAATGTTTTATACAACCAGGTAATCACTCAATATGCTCTCTGGGCAAATACAATCAATCAACTTTAGAATGCCATTGCCAATTAAACTTGACATAGAcacaaataattgttttttttctccaaaatctGATAGTTATTTTTGGGTTTTCTGAGGTGTTATTGGAGCTGGCTCACCAACATCcttgtttagatttttttccagCTGTGAGCAgctctttcatttcatttcatttcgtTGCTTTGTGGGAGAATATTGTCTACAACAGTACACTCACAAATCTAGTGCTTTTTAGTATGAGTCCTGTCTATTTAGCCATGCTGGTTtcggtcagtccaccactttgattcagactgaaatatcccAACAAACAAATTTTCATCTGCTGACCTTGGTGATTCCGTGACAtcttcctctagcgccaccatgaggtttacatttgttttttttcagtgaaatgtctcaagaATTATTGGAAATTTGCCCCTTTCGGGTTATCctgcacggcagctggattctcacgAGATCACGCTACAATCGTGTGATCACATATCACACGATAATCCATACGTCATGCTTCAAGTAATGCTTTTTGTGTCTGAACTCCCAACTAActgaaccaatcagcgtccGGTGAGGAGCTACTAGCAGCTACGGGCGTGGTTTAGGAGCGTGTGACAGCCGCGACTGTTCGTTCAAAACAACCAGGGGTGTCAGACTGGGAGTGGAAAGGGCCTGAGTGCTCAGGgcccctcatgtgaggaggacCCAAAAAGATGCttgaatgaatagctgtggatgtggggagaGGCCCATAGAATAtgtctttctacagggcccagaacgTTATGCTACGCCCCTGAAAACAACAATGGTGGACGTGATAGACGGATGGTTCATcgaatcacctgccaggtatttttttttaaagtgcctgccctttctaaacagtttccaatgacggcttctcagatcATTCAGTTTATCTCTCAGGACCATGAGGTAAAATTTTCTTATGACCATCTACTGCAAAACTAATTACATTTCTGTCAATCTGTTGTCCTATCCATGCAAAAACAGTTAGTCAATACATTGCAATTTTAAGCTCTTGTGCCGTGCCACTTTTCATGTAATACCACCTGTATTAGGGCACAGGGCACTGCACAAGAGCCTGAAAATCGTGCCCAATGTTCAGCCAATTTCcaacactatttatttctgataATCCCACTTACTGTGCAAATCTTTATATGTGGCTCTTGAAAAGCAAATCACAGTAATCATCTGTCACAAGGTCAGTCCTGCTTTTCCCCCATTCTACTCCTGTCACTCCTTTCAGCCACCTCCTCATTTCCGCAGCACCCTGCAGTGCCATTTTCCACCCATCCACCAGATGCCCTAAGACTTTTCCACTCATCCCAATCAACTGACCCTCTCATTTACCTGCTCACCTGTTTCCACTTTCTCTCATCAGCCCTGCAGTGTATTATCGGCGCATTTCATTTTCCCTGCCAGGTTGCCAGTGTTTCTACATGGCTTGTTTTCCAGCGACCTGAACCTGAATCCTAAACCCTGGAATCTGGAACCTGGAACCTGTACCTGCCTAGTCAGCGCTGGGGAGAATAACAGCAGGTTGCAGTGCCAGAGGTGAGCAAGGTGACAGCAGTGAAGCAGACGTTCGCGTTGCTGCTACTCCATTATCGTATTAAACCCCAAGCAGTGAGGCGCCACACAGGGAGCTgcaaacatctcctcctccCCGCCGATGAGCCTTTGCTCAACTGCCAGCGTCGTCAGTAGTCGAGCAAAGCAAACTGGTGGCGCAGCCAGCCTGCAAATTACTGCCAAGGCAGTTGGTGTCAGTGAGGGGAACAAGTTGTCAACGCTGCACGTCTCTCAACATCTCTGTTTCTTCGGGATAAATCAActgaacatgtttttaaatcccCTTCCTCCTCACTTGTAAACATGACTTTTGTTTGTATGAACGGAGCATACGTGTTTAGGTGAGCCAGGCACGGCGTCATTGTGAATGGCTGAGCTAAATCTATCCACCGGAGAATAATGTATACCCATGCGTGCTGAATGGTTTTGATTATGGAACAATCTGTTACTCGCGTTGCATGGTTCATGGCAAACATCCTGCCATATATCAAACAACTGTCTGAATCTGCTTGGCCGGTCACAGATGTCCAAATCGCTCTTTCATCCTGTTTATCTAGAAATGTATCTCTGATTTACTCTGGTGGCTCAATTATAGGCACATATGTTTACATCCACAAGCTGTGATTGATTATTTTGATAAGAGTTTTGTCCCTGAGGTAGTTTGAGGAGTATAATGTTGTGCTGCAGCGCAATGAAATGCCATCATATTGTGTCTTTATTCTGAAACCTTTTACGTTTAAATATACTGCACAAGATTGATCAAAAAAGACTTCAAATTACACTGCACAATGTAAAACCA
>XR_005638714.1
catattaatgttaaaaaacctcataaagtgaaattttcatgccatgggaccattAATGTTTTATACAACCAGGTAATCACTCAATATGCTCTCTGGGCAAATACAATCAATCAACTTTAGAATGCCATTGCCAATTAAACTTGACATAGAcacaaataattgttttttttctccaaaatctGATAGTTATTTTTGGGTTTTCTGAGGTGTTATTGGAGCTGGCTCACCAACATCcttgtttagatttttttccagCTGTGAGCAgctctttcatttcatttcatttcgtTGCTTTGTGGGAGAATATTGTCTACAACAGTACACTCACAAATCTAGTGCTTTTTAGTATGAGTCCTGTCTATTTAGCCATGCTGGTTtcggtcagtccaccactttgattcagactgaaatatcccAACAAACAAATTTTCATCTGCTGACCTTGGTGATTCCGTGACAtcttcctctagcgccaccatgaggtttacatttgttttttttcagtgaaatgtctcaagaATTATTGGAAATTTGCCCCTTTCGGGTTATCctgcacggcagctggattctcacgAGATCACGCTACAATCGTGTGATCACATATCACACGATAATCCATACGTCATGCTTCAAGTAATGCTTTTTGTGTCTGAACTCCCAACTAActgaaccaatcagcgtccGGTGAGGAGCTACTAGCAGCTACGGGCGTGGTTTAGGAGCGTGTGACAGCCGCGACTGTTCGTTCAAAACAACCAGGGGTGTCAGACTGGGAGTGGAAAGGGCCTGAGTGCTCAGGgcccctcatgtgaggaggacCCAAAAAGATGCttgaatgaatagctgtggatgtggggagaGGCCCATAGAATAtgtctttctacagggcccagaacgTTATGCTACGCCCCTGAAAACAACAATGGTGGACGTGATAGACGGATGGTTCATcgaatcacctgccaggtatttttttttaaagtgcctgccctttctaaacagtttccaatgacggcttctcagatcATTCAGTTTATCTCTCAGGACCATGAGGTAAAATTTTCTTATGACCATCTACTGCAAAACTAATTACATTTCTGTCAATCTGTTGTCCTATCCATGCAAAAACAGTTAGTCAATACATTGCAATTTTAAGCTCTTGTGCCGTGCCACTTTTCATGTAATACCACCTGTATTAGGGCACAGGGCACTGCACAAGAGCCTGAAAATCGTGCCCAATGTTCAGCCAATTTCcaacactatttatttctgataATCCCACTTACTGTGCAAATCTTTATATGTGGCTCTTGAAAAGCAAATCACAGTAATCATCTGTCACAAGGTCAGTCCTGCTTTTCCCCCATTCTACTCCTGTCACTCCTTTCAGCCACCTCCTCATTTCCGCAGCACCCTGCAGTGCCATTTTCCACCCATCCACCAGATGCCCTAAGACTTTTCCACTCATCCCAATCAACTGACCCTCTCATTTACCTGCTCACCTGTTTCCACTTTCTCTCATCAGCCCTGCAGTGTATTATCGGCGCATTTCATTTTCCCTGCCAGGTTGCCAGTGTTTCTACATGGCTTGTTTTCCAGCGACCTGAACCTGAATCCTAAACCCTGGAATCTGGAACCTGGAACCTGTACCTGCCTAGTCAGCGCTGGGGAGAATAACAGCAGGTTGCAGTGCCAGAGGTGAGCAAGGTGACAGCAGTGAAGCAGACGTTCGCGTTGCTGCTACTCCATTATCCCTCCAGCAGCTAGCAGAGATGAGCTGTCTGGGAAGAGAGGCCAACGCAGCGCTTCTCGTCTCATCTCCTCCTAATCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638712.1 False 1834 lncRNA 0.44 3 15819463 15848699
XR_005638713.1 True 2515 lncRNA 0.44 3 15818610 15848699
XR_005638714.1 False 1833 lncRNA 0.44 3 15829888 15848699

Neighbor

gene id symbol gene type direction distance location
neo1a NA coding downstream 31242 15599975 ~ 15787368 (-)
LOC120556584 NA coding downstream 178650 15639769 ~ 15639960 (-)
LOC120555812 snx1,LOC102784823 coding downstream 226754 15580040 ~ 15591856 (-)
csnk1g1 csnk1g1,LOC103370372 coding downstream 240518 15536974 ~ 15578092 (-)
LOC120556400 rps17,LOC100699764,LOC107389132 coding downstream 286600 15524344 ~ 15532010 (-)
bbs4 bbs4,LOC102786181 coding upstream 8016 15856715 ~ 15872441 (-)
scamp2l scamp2,LOC106512987,LOC107381771 coding upstream 24012 15872711 ~ 15884598 (-)
myo9aa myo9a coding upstream 38312 15887011 ~ 16017712 (-)
gramd2aa gramd2,LOC102079700,LOC101472756 coding upstream 182971 16031670 ~ 16068535 (-)
trip4 trip4,LOC102789106 coding upstream 319776 16168475 ~ 16254605 (-)
G27594 NA non-coding downstream 221743 15596613 ~ 15596867 (-)
G27587 NA non-coding downstream 271819 15546578 ~ 15546791 (-)
G27582 NA non-coding downstream 283273 15534000 ~ 15535337 (-)
G27552 NA non-coding downstream 312942 15479306 ~ 15505668 (-)
G27554 NA non-coding downstream 332145 15483110 ~ 15486465 (-)
G27659 NA non-coding upstream 180188 16028887 ~ 16029172 (-)
G27698 NA non-coding upstream 318260 16166959 ~ 16168421 (-)
G27725 NA non-coding upstream 538197 16386896 ~ 16387172 (-)
G27729 NA non-coding upstream 560771 16409470 ~ 16409936 (-)
G27767 NA non-coding upstream 708834 16557533 ~ 16558521 (-)
cfap70 LOC103368539,LOC102222702,LOC102790175,LOC102296598,LOC102204478,LOC104922799 other downstream 739780 15050662 ~ 15078830 (-)
G27420 NA other downstream 974705 14842713 ~ 14843905 (-)
LOC120556476 NA other downstream 1238599 14578027 ~ 14580011 (-)
G27321 NA other downstream 1348265 14469758 ~ 14470345 (-)
G27075 LOC104939823,LOC100707594 other downstream 2722844 13069996 ~ 13095766 (-)
LOC120556162 znf609 other upstream 222870 16071569 ~ 16159882 (-)
LOC120555730 adamts7 other upstream 473264 16321963 ~ 16408868 (-)
LOC120556401 LOC104927750,LOC104949847,LOC103353195 other upstream 1344814 17193513 ~ 17284509 (-)
G27925 LOC103353204,LOC106512954,LOC102223374,LOC104951141 other upstream 1659424 17508123 ~ 17513168 (-)
c3h15orf48 clg1h15orf48,csgr07h15orf48,LOC103353210,LOC107085327,LOC104951152 other upstream 1751051 17599750 ~ 17601390 (-)

Expression


Co-expression Network