LOC120555486


Basic Information

Item Value
gene id LOC120555486
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 3388522 ~ 3389725 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638719.1
tgtctgcaagtccagatttacatgatactgataatgacgccattgtgtctgcctgtaagacatattaCGAGACAGCACGCAGGAGCTTCAGGTAGAAACAACCAGATCTGGCATCGtgggcagaagctgtgaagagttcagctcggagtcggtcaagaagaaaagaggctgctggaagcgagacagagtgtgCTGGCTGCGGGTGAGGTGGACATTTGTAAGTGCGCCACCATAGACCTGATGATCCGAAATACAGGGCAAAGCATCACAGACGCCTGAAAAATGGACCGAATTCAGACAGAATGCCATCAGTTACCTACAGCTCCAAGGCGGCCGTGGTTTAGGGGTTGACGGTGCTGTATGATTTGGCTTCTCATGTGCgtgggatatttgttgtgtgtgctgtgtgtctcctatgctttgtacatagttttttttctgattgcgtttgtgttttgtgttaataAAGCTCTACCTTTGAACAGAGCCGGATTAACCATTAGGGCAACTGGTCACGTGCCCAGGGGCACAGGACATCTAAGGGGCCCTGGGCTCCGGCAAATATTATGTTAGATCACATTATAAACGCAGTCCTCACTTTCCTAATTATATGCGGATTTTTGCAACCCGTTCCATCAAAATATTATGTTAAATTGCGTCAAAAACAGTGTCTGTAGCTTCCTCCATAGCGAGCGACAAGAGAACGAGCTGTCACAGACGGTGGTAAAGTTTGTTTTATATTGGAAGGTCAAGCTGGataatagatttttcgaatgtgtcgaatatccaacgtccaatataaaaccaactttaccacggtcTGTCACAGCGAGTTGGCTGCGGTGTGTTGGCAATGCATCAcggcaaagactggagcgaTTGAGCTGCACCCCGAGCCTATGAAAGTGAAGTCAGTTTCCCCAGGGGaagtttaaacacacatttaaaggtgcaatatgtaatattgtgtgtaatactggcagctagcggttaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638719.1 True 995 lncRNA 0.46 3 3388522 3389725

Neighbor

gene id symbol gene type direction distance location
slc7a6 slc7a6,LOC104919890,LOC103355407,LOC102782072 coding upstream 83034 3280076 ~ 3305488 (+)
adgrg1 NA coding upstream 115344 3250608 ~ 3273178 (+)
LOC120555875 LOC103368003,LOC100711702 coding upstream 152503 3223869 ~ 3236019 (+)
phkb phkb coding upstream 1205768 2039463 ~ 2182754 (+)
slc7a10a LOC104919817,LOC103369274 coding upstream 1570528 1789953 ~ 1817994 (+)
LOC120555909 NA coding downstream 31478 3421203 ~ 3422406 (+)
mtss1lb LOC102779958,LOC108237900,LOC103462242,LOC103355402 coding downstream 233909 3623634 ~ 3724143 (+)
LOC120556182 LOC101467318,LOC102294465,LOC102206054,LOC108237897 coding downstream 483307 3873032 ~ 4152064 (+)
LOC120555911 LOC102783822,LOC103462246,LOC106925612,LOC102294465 coding downstream 773951 4163676 ~ 4254074 (+)
LOC120555425 NA coding downstream 943340 4333065 ~ 4341288 (+)
LOC120555485 NA non-coding upstream 9 3382656 ~ 3388513 (+)
LOC120555484 slc7a6os,LOC102781591 non-coding upstream 8607 3309375 ~ 3379915 (+)
G25288 NA non-coding upstream 248135 3139689 ~ 3140387 (+)
G25281 NA non-coding upstream 416612 2971607 ~ 2971910 (+)
G25279 NA non-coding upstream 418264 2969770 ~ 2970258 (+)
LOC120555487 NA non-coding downstream 23287 3413012 ~ 3414535 (+)
G25380 NA non-coding downstream 73332 3463057 ~ 3463523 (+)
G25418 NA non-coding downstream 224521 3614246 ~ 3614516 (+)
G25436 NA non-coding downstream 426112 3815837 ~ 3816148 (+)
G25486 NA non-coding downstream 955913 4345638 ~ 4348769 (+)
adamts18 adamts18 other upstream 1076365 2240414 ~ 2312157 (+)
G25204 NA other upstream 1305203 2081958 ~ 2083319 (+)
G25173 dnaja2,LOC106524269 other upstream 1545711 1839333 ~ 1842811 (+)
mapk8ip1b mapk8ip1,LOC102793463 other upstream 3304096 11843 ~ 84426 (+)
mmp15b mmp15,LOC104948393 other downstream 91572 3481297 ~ 3518086 (+)
G25431 NA other downstream 395208 3784933 ~ 3785542 (+)
G25512 NA other downstream 1180648 4570373 ~ 4575645 (+)
tshz3b tshz3 other downstream 1404090 4793815 ~ 4837285 (+)
G25708 NA other downstream 2644484 6034209 ~ 6035193 (+)

Expression


Co-expression Network