LOC120555818


Basic Information

Item Value
gene id LOC120555818
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 25442301 ~ 25446052 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638758.1
AGCGGTCTCCCAGAAAAACTTCCCTGCGCCGACTGCAGCAGACGCGGAGGACTTGATTGGGCAAGGGCTGAAGTTTGCCCCACACAGACGGTCAGCTGAGAAGGACTGAGCCTTCAAAACCATGgagctctatttttttttttttgcggaagcaagagctgttggccatcttctacactgctgccatcctccTGCCTTCTCCCCTCTGGCTGGCGCtacagatccctgcacacaaaaaaacgttccataaagTTTTGGAAGTGAAAACTCTGGGGAGGCACTAGCAAAAATTGCCACAGAAGGTGAAGATGAGCGGCAGAGGAGAGACTAAAAACAGCTGCTTGAAGAGACTGCGATCCCAATGGCAAGCTGTTTTGATTGGgattttgatgttgcttttttgTGGAGTGACCAGTGTCAGATAACTCAGATAAATAACCAGCAAAGTCTGGTAGAAGATTTACAGCATATGGAAAAGAACACCAAATTGCAAATAGAAAACAATCAGCTGAAGCTACTTCTGAGCTCCACTCAACTCCAGTATGACCAACTGAAGCTGCTCATAAATGCAACATGGTACAACTTCACCTTGTCTGCTAAAAATAAACAGTTGAGCCTGCTTTTGAAGAACACTTTGCAAGAAAAAAGTCAGTTGCAAGTGGAGAACCAAGTGTTAAAGCAACTTCTTAACTCCACCTGTCAAAACTCAACACTTCTGGGAAATGAGTATGCAACACCATACAACTTCACCTTGTTGTTTGCTGAAAATACACAGCTGAGCCTGCTGTTGAAGAACACATTACAAGGAAATACACAGTTGAGCCTGCTGTTGATGAACACATTGCAAGAAAAAACTCAGTTGCAAGTGGAGAACCAAGTGTTACTTCTTAACTCCACCTGTCAAAACTCAACACTTCTGGGAAATGAGTATGACCAGCTGAAGCTGATCATAAATGCAACACCATACAACTTCACCTTGTTGTCTGCTGAAAATACACAGCTGAGCCTGCTGTTGACGAACACgttacaagaaaaaaacagttttaagtGGAGAACAAAGAGCTGAACCTGCATGGTTCTAAAGTCAACCCTGGAGGAGAACGGACAACTGAGTCTGCTCTCGAGCAAAATATCGCAAGAAAAAACCCAGTTGCAAGTGGAGAAAGAAGAGCTAAAGCAACTCCTGAAATCCACCTATCAAAACTTCACACTTCTGGGAAGTGAGTATGGCCAACTGAAGCTGCTCATAAATGCAACACGGTACAACTTCACCTTGTTGTTTGCAGAAAAAACACAGCTGAGCCTGCTGTTGAAGAACACGTTGCAAGAAAAAACCCAGTTGCAAGTGGAGAAAATGAGCTGAACCTGGTTAAAGTCAACCCTGGAGGAGAACGGACAACTGAAGCTGAGACTGAGTGAATCATTGGACATCATCACCCTGGCATCTGCAGAAAGCAATCAGTTGCGCCTGCTGTTAAACAATGAACAAGAAACCTCCTTGCAGctgcaggaaaaaaataaactccaGCATTCACTCCTTTATTCCAACAAACTGTCCAACATCTGGAAATACTGTGAAAACGACACACTGCAGTGTTCACACTGCATGTCTGGCTGGACCGAACACGGTTCACGTTGCTTCTTGCTATCAAAAGAAATTAAGAAGTGGGAATTTGGTCGCAGTGATTGTCTTGACATGGGGGGTGACCTGGCTATTGTTTTGAATGCCGAAGACCAGACATTCTTGACCAACATGACTCTTCAATATGTAATGGAGAACCCTACAGTAGATTTCCATTCAGCGTGGATTGAGTTGCAGGACATGGTGAAAGAGGGCGACTACATCTGGATCACTGGCGAGAGAATTCAGAAAACTGTAAGTTAGTGGCTGCCCGGGCAGCCAAACAACGCCATAGCAACCTGGGACAAAGAACAGGCAGGCCAGGACTGTATTGCCATTATCCCACCGAAAGTCATTGGAAAGGGTTCGTTGAGATCCTGGGATGACATTGTTTGTGGTGGCGAACGGCACTACATATGTGAGACCATGGCTTTAATTTTGTCCTGACAGATGATGAAGCTGCATGTTGTAGATGTATGGTCGTTAAGACGTGGAGGAAAAGCCACATTTACTTGGGCGCCCAAAGATGTTTCCtttgtttgtatattaataatTTCTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638758.1 True 2182 lncRNA 0.44 3 25442301 25446052

Neighbor

gene id symbol gene type direction distance location
ctr9 ctr9 coding upstream 25515 25407601 ~ 25416786 (+)
ampd3a LOC104930104 coding upstream 86448 25326246 ~ 25355853 (+)
adma NA coding upstream 106822 25332984 ~ 25335479 (+)
swap70a swap70,LOC104918979 coding upstream 227241 25202025 ~ 25215060 (+)
ipo7 ipo7 coding upstream 241337 25184680 ~ 25200964 (+)
btbd10b btbd10,LOC103362377 coding downstream 193477 25639529 ~ 25650613 (+)
dkk3a dkk3 coding downstream 359393 25805445 ~ 25810504 (+)
kars1 kars,LOC102775760 coding downstream 485224 25931276 ~ 25942831 (+)
gcshb gcsh coding downstream 507746 25953798 ~ 25957807 (+)
rpl13 rpl13 coding downstream 514866 25960918 ~ 25966638 (+)
G29790 NA non-coding upstream 4442 25437650 ~ 25437859 (+)
G29787 NA non-coding upstream 15943 25424909 ~ 25426358 (+)
G29786 eif4g2,LOC102309340 non-coding upstream 21795 25417807 ~ 25420506 (+)
G29747 NA non-coding upstream 220864 25221046 ~ 25221437 (+)
G29685 NA non-coding upstream 342708 25098170 ~ 25099593 (+)
G29794 NA non-coding downstream 8616 25454668 ~ 25455139 (+)
LOC120555969 NA non-coding downstream 124739 25570791 ~ 25574421 (+)
G29849 NA non-coding downstream 176137 25622189 ~ 25622452 (+)
G29851 NA non-coding downstream 178896 25624948 ~ 25637125 (+)
G29868 NA non-coding downstream 239788 25685840 ~ 25688108 (+)
sox6 sox6,LOC103363464 other upstream 986613 24320064 ~ 24455688 (+)
plekha7b NA other upstream 1127656 24235723 ~ 24314645 (+)
G29433 NA other upstream 1709830 23727012 ~ 23732471 (+)
igdcc3 igdcc3 other upstream 1925038 23443149 ~ 23517263 (+)
G29292 NA other upstream 2305274 23136732 ~ 23137027 (+)
pkd1l2a vat1l,pkd1l2,LOC102776808 other downstream 409787 25855839 ~ 25883360 (+)
nfat5b nfat5 other downstream 437402 25883454 ~ 25927726 (+)
LOC120556198 LOC103371916,LOC104965843 other downstream 1849705 27295757 ~ 27316181 (+)
nedd4a nedd4,LOC103371920,LOC102785817 other downstream 1872318 27318370 ~ 27351837 (+)
LOC120555577 NA other downstream 1962988 27409040 ~ 27410250 (+)

Expression


Co-expression Network