LOC120556080


Basic Information

Item Value
gene id LOC120556080
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 11303593 ~ 11325210 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638791.1
aagagaatagaacagagaagacagacaaacagaagtGGAAGGCAACAGATCTAGACTACTggtcatattactgcctgtagtatctgtatagactactgttcatattactgcctgtagtatctgtAAATactactgttcatattactgcctgtagtatctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638791.1 True 160 lncRNA 0.38 3 11303593 11325210

Neighbor

gene id symbol gene type direction distance location
minar1 kiaa1024,LOC107562943,LOC102799073 coding upstream 165195 10934633 ~ 11138398 (+)
LOC120555826 NA coding upstream 172121 11129921 ~ 11131472 (+)
shcbp1 shcbp1,LOC104947898,LOC104967817 coding upstream 463444 10789845 ~ 10840149 (+)
LOC120555949 NA coding upstream 558267 10741710 ~ 10745326 (+)
LOC120555948 LOC103462314 coding upstream 694512 10527838 ~ 10609081 (+)
LOC120556595 NA coding downstream 706411 12031621 ~ 12031728 (+)
LOC120555527 NA coding downstream 1230837 12556047 ~ 12562553 (+)
LOC120556313 LOC104939823,LOC100707594,LOC101479997,LOC105924362 coding downstream 1740742 13065952 ~ 13071332 (+)
LOC120556474 NA coding downstream 1764325 13089535 ~ 13091435 (+)
si:cabz01068815.1 NA coding downstream 1819297 13144507 ~ 13176403 (+)
G26724 NA non-coding upstream 78868 11224420 ~ 11224725 (+)
G26722 NA non-coding upstream 94292 11208721 ~ 11209301 (+)
G26714 NA non-coding upstream 116009 11187111 ~ 11187584 (+)
G26713 NA non-coding upstream 123475 11179611 ~ 11180118 (+)
G26712 NA non-coding upstream 124340 11177673 ~ 11179253 (+)
G26746 NA non-coding downstream 733 11325943 ~ 11329657 (+)
G26748 NA non-coding downstream 10225 11335435 ~ 11335807 (+)
LOC120555674 NA non-coding downstream 53225 11378435 ~ 11379500 (+)
G26781 NA non-coding downstream 140741 11465951 ~ 11466168 (+)
G26816 vps35 non-coding downstream 281113 11606323 ~ 11609317 (+)
aldh1a3 aldh1a3,LOC106562593,LOC103357544,LOC104941118 other upstream 1443593 9814697 ~ 9860000 (+)
asb7 asb7,LOC102792420 other upstream 1626566 9653578 ~ 9677027 (+)
adamts17 adamts17 other upstream 1699131 9391108 ~ 9604462 (+)
cers3a cers3,LOC102798777 other upstream 1924982 9333229 ~ 9378611 (+)
G26236 NA other upstream 2148250 9068729 ~ 9155343 (+)
lto1 oraov1 other downstream 578062 11903272 ~ 11912722 (+)
G27086 NA other downstream 1784547 13109757 ~ 13110339 (+)
LOC120556202 NA other downstream 1910025 13235235 ~ 13237819 (+)
slc35c1 slc35c1 other downstream 2346267 13671477 ~ 13676613 (+)
lrrc4cb LOC104946080,LOC107396660,LOC103367510,LOC108234802,LOC101071141 other downstream 2484725 13809935 ~ 13856423 (+)

Expression


Co-expression Network