LOC120556100


Basic Information

Item Value
gene id LOC120556100
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10659569 ~ 10660575 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638795.1
GCCAGTTCGTTACAACCGTACATGTGATCCCGTTCTGAAACTGCTACCTACCTGCCCTCCTGCTGTGATCTGCTTGCCTGCTGCTAGCTACTCTGCTCGCAGCACTCTCTCAAACTGACCTCCTTGTCTCTGCTAATGCTCCTGCCCCCCGGGAACCCCCAGTTACCTCGCCTGAACCCTTCGCCGGGGAGTTGAACAAGTGCCGTGGTTTCCTGCTTCAGTGCCGCCTGGTTTTCCAACAGAAACCCCTATCATTCTCCACTGAATCCTCTAAGAATTGTGTTTGACCATCCGGACCATGCCGGTAATGCCTCCAAGAGACTCCTGAAGCTGAGGAAGGGCACGGGCAGTGTGGCCGAATATTCAATTGAATTCTGGACGTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638795.1 True 385 lncRNA 0.54 4 10659569 10660575

Neighbor

gene id symbol gene type direction distance location
LOC120555948 LOC103462314 coding upstream 50488 10527838 ~ 10609081 (+)
LOC120555947 hnrnpab,LOC100707314,LOC102779500,LOC101480042 coding upstream 174258 10484463 ~ 10485311 (+)
LOC120555943 LOC103372586 coding upstream 194015 10425163 ~ 10465554 (+)
lrrk1 lrrk1 coding upstream 562930 9861152 ~ 10096639 (+)
lins1 NA coding upstream 1016611 9632007 ~ 9642958 (+)
LOC120555949 NA coding downstream 81135 10741710 ~ 10745326 (+)
shcbp1 shcbp1,LOC104947898,LOC104967817 coding downstream 129270 10789845 ~ 10840149 (+)
minar1 kiaa1024,LOC107562943,LOC102799073 coding downstream 274058 10934633 ~ 11138398 (+)
LOC120555826 NA coding downstream 469346 11129921 ~ 11131472 (+)
LOC120556595 NA coding downstream 1371046 12031621 ~ 12031728 (+)
G26530 NA non-coding upstream 180208 10479022 ~ 10479361 (+)
G26526 NA non-coding upstream 203957 10455401 ~ 10455612 (+)
G26512 NA non-coding upstream 273928 10385230 ~ 10385641 (+)
G26508 NA non-coding upstream 323187 10330691 ~ 10336382 (+)
G26505 NA non-coding upstream 349566 10309674 ~ 10310003 (+)
G26605 NA non-coding downstream 110384 10770959 ~ 10771999 (+)
G26634 NA non-coding downstream 218367 10878942 ~ 10879304 (+)
G26636 NA non-coding downstream 240053 10900628 ~ 10900858 (+)
G26639 NA non-coding downstream 255137 10915712 ~ 10916142 (+)
G26711 NA non-coding downstream 516299 11176874 ~ 11177288 (+)
aldh1a3 aldh1a3,LOC106562593,LOC103357544,LOC104941118 other upstream 799569 9814697 ~ 9860000 (+)
asb7 asb7,LOC102792420 other upstream 982542 9653578 ~ 9677027 (+)
adamts17 adamts17 other upstream 1055107 9391108 ~ 9604462 (+)
cers3a cers3,LOC102798777 other upstream 1280958 9333229 ~ 9378611 (+)
G26236 NA other upstream 1504226 9068729 ~ 9155343 (+)
lto1 oraov1 other downstream 1242697 11903272 ~ 11912722 (+)
G27086 NA other downstream 2449182 13109757 ~ 13110339 (+)
LOC120556202 NA other downstream 2574660 13235235 ~ 13237819 (+)
slc35c1 slc35c1 other downstream 3010902 13671477 ~ 13676613 (+)
lrrc4cb LOC104946080,LOC107396660,LOC103367510,LOC108234802,LOC101071141 other downstream 3149360 13809935 ~ 13856423 (+)

Expression


Co-expression Network