LOC120556195


Basic Information

Item Value
gene id LOC120556195
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 39647947 ~ 39653298 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638823.1
CGttaaagatttgtgttgttgttgcccagaaaatgacagagaaaagaaaaacagacataagatccttttttCAGTAGGCCTACACCAAAACGCCAAgcaaaggagacagaaagaaggaacagggagaccagggacagtcaggtggagagtctcagGTACACATcagtgtctttaaaaaaaaataacacaccgCAGTGCTGTACCGACCATCATTGTCCCCTTTGCCCCACTTCAATATACAAGCCCCGGTGTAGGCAAAAGGTTTTGCAGCACATGGAGGTGCATGTAAAGAATGCCATTCAACATGAAGATTTCTTCATAACAAAATGCCACAAGTCCTGCAGGAGTGGAAGCAGTGGTCACTTCCACTGCCCTTTCTGCCTCAagaccacaataaaaaggcaggatACACTGAGGCATTTGCAGATCTGTAGGCCGCCTCTCCATGACGCCCAGTTGGACGCTGATGCCGACTGCAGAGAGATCGGCATCACTTCCCAGACAGAGGAGTGCAAAGCAGGATCTGTGAACCTACCTCAGCTCAGCACTGACAAACTGCCTGTATCGTTACATGATAGTGAAATACAAGGACAAAGAGACCCAGGAGAGAGACCCCAAGACCCACCGCCAGAATCCTTCTTGCCTATCAGTCCTATCCTGGACAATCCTCCCTGCAGAGTGAGCCGTGTAAAGTTGCCAAATGTACTTTGTCCTCACTGTAATGTGAAGTTCCAAAGAAAAAATATCAAGAAGCACATTTACAGACAACACACCGATAAAGCTGTCAGAGATATCACTGCATATTCCCATGCTGTATGCATTGATGAGAAGAATGGGATATATGCTGTGAAAAAAGTCGTTTCTTGGACCTTTTGTGCCTCTTCATGTCCAAAAGAAAAACCTGGGGGAAAGAGCACAAAATCAAGTGTGAGTCCAGGGAGTGCCAACAGGCCAGTGACTTTGCTGTCAGGAGTGGCTTGAAGACATTTCAATGCCATCATGTCTGCTCTCTTGACTACTGTTCAGCTAATGCCACTGATACTGTACTGAGTGAAGAAATTCTGACTGATATGGCGGAAAACAAGTGGTTTGgagaaaaacaggaaacagcagtGTCTCCAGCTCCAGTCACAGGCAGCTACTGCCAGTGTGCCAGTCTCCTGCCTTGAAATCAGAGCTGAAATGGTACATATCAGTCTATGAACCGAATGTAAGCTATTACAGCCGACTGGGACGAGTCGGCTGTAATGGGAGGCAAAGAGGCCCAGGACAATCCCCCCTGAACAGTCGGAACCTGTTGACCTGACCAAGGAAATGGGGATTTTGGAGATTACAAGATCTTTTCTCGAAGACATATTGCTTGAGGTGGTCCTCCAGGATGGTGATAAGGCACTGATGACCTTGGCCCTAGTCTGTTCAGAGTCATACTCAAGGATGAAAACTTCCGGGAAAGAGCTCACTTTCTGTGGTTTGACACTAAGTAAAAATGTGTGACTAATTGGAGAAGGTTCTCCTCCAAATACAAAAAAGAATTCGGCACTGAGATGTACTCAGTGATGAACTGCTCTCAGTGCTATTGTCCATACAAGAGCTGCATGTTGGGTTACGTTGGAAGAGGAAGGCGGGTGAGCTGCGGGGGATATATTCTGAAGATCCCCACCCAGGATTCTGCAGCCATTTCTGCCAACTAACAGCAGGATTTCCTGAAGAGGGATAACAAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638823.1 True 1723 lncRNA 0.46 10 39647947 39653298

Neighbor

gene id symbol gene type direction distance location
zdhhc13 zdhhc13 coding downstream 1041 39629922 ~ 39646906 (-)
nav2a nav2,LOC102790384 coding downstream 167485 39362422 ~ 39480462 (-)
htatip2 htatip2,LOC102791710 coding downstream 332157 39308042 ~ 39315790 (-)
prmt3 prmt3,LOC102792178,LOC102297811 coding downstream 342018 39242675 ~ 39305929 (-)
LOC120555936 nell1 coding downstream 562483 38755925 ~ 39085464 (-)
mpped2a mpped2,LOC106524710,LOC102220360,LOC107083882,LOC100703837,LOC102192152,LOC107381839 coding upstream 67974 39721272 ~ 39793912 (-)
LOC120555276 LOC100703294,LOC107381837,LOC103366994,LOC102295725,LOC102215676,LOC101474681 coding upstream 229638 39882936 ~ 39898517 (-)
LOC120556430 LOC101156874,LOC103142636,LOC107083861 coding upstream 249370 39902668 ~ 39910451 (-)
slc22a18 slc22a18 coding upstream 278008 39931306 ~ 39938866 (-)
samd4a samd4a,LOC102311861 coding upstream 591631 40244929 ~ 40313805 (-)
G32828 NA non-coding downstream 40626 39543171 ~ 39607321 (-)
G32751 NA non-coding downstream 405844 39241889 ~ 39242103 (-)
G32749 NA non-coding downstream 409929 39237807 ~ 39238018 (-)
G32742 NA non-coding downstream 519840 39127908 ~ 39128107 (-)
G32684 NA non-coding downstream 1276875 38369083 ~ 38371072 (-)
G32912 NA non-coding upstream 177271 39830569 ~ 39913728 (-)
G32922 NA non-coding upstream 290115 39943413 ~ 39946579 (-)
G32923 NA non-coding upstream 291073 39944371 ~ 39947111 (-)
LOC120556076 NA non-coding upstream 321555 39974853 ~ 39985779 (-)
G32943 NA non-coding upstream 372836 40026134 ~ 40038460 (-)
slc6a5 slc6a5 other downstream 412201 39205275 ~ 39235746 (-)
LOC120556344 lrrc49,LOC102795887 other downstream 1820676 37788725 ~ 37827271 (-)
ss18l2 ss18l2 other downstream 2394521 37231141 ~ 37253426 (-)
nod2 nod2 other downstream 2756643 36883651 ~ 36891304 (-)
cylda cyld other downstream 2765152 36859547 ~ 36882795 (-)
LOC120556511 LOC102208128,LOC101468289 other upstream 396326 40049624 ~ 40142048 (-)
LOC120556146 NA other upstream 910943 40564241 ~ 40589664 (-)
G33122 NA other upstream 995378 40648676 ~ 40662621 (-)
LOC120556513 NA other upstream 1008066 40661364 ~ 40663657 (-)
sirt3 sirt3 other upstream 2104329 41757627 ~ 41764896 (-)

Expression


Co-expression Network