LOC120556213


Basic Information

Item Value
gene id LOC120556213
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6901354 ~ 6963722 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638826.1
AACGCTCGAGACCCTCCCGTTTTCTCTCCTCAGCGAGGACGACGTTTTCCATCCAGAccagaaggggaaaaaaacagcaaaaaaagagGACAACCACCAGACCGGGGTttggctgaaaaaaaaacaaaaaaaacccggAACCTTTAGCTGCTTTACCGGGGATAAAAGACATATCGCAGGCGGAGATAACAGCATTCTTCACCGGTGCTTCCTTTACGAACACAACGTTTTCAGACGAGGAGTGTTGGCAAGCTTCTAGGAAGGTCAGACTTTACTACTGGAACCAGGCTGATCACTGACTAGAAGATGAGGATGCTCCCCTGAATCCCACCCGCTCACAACACCCCCcatccccc

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638826.1 True 356 lncRNA 0.50 3 6901354 6963722

Neighbor

gene id symbol gene type direction distance location
ccdc102a ccdc102a coding downstream 5 6847479 ~ 6901349 (-)
nadsyn1 nadsyn1 coding downstream 271066 6598675 ~ 6630288 (-)
LOC120555473 NA coding downstream 392660 6506363 ~ 6508694 (-)
pcsk6 pcsk6,LOC108237842 coding downstream 419344 6454631 ~ 6482010 (-)
plekho2 plekho2,LOC102775773 coding downstream 522276 6347189 ~ 6379078 (-)
LOC120556364 NA coding upstream 6556 6970278 ~ 6982361 (-)
LOC120556367 LOC104932139,LOC100695351,LOC108237907,LOC102197162,LOC103129685,LOC106520888,LOC101465514,LOC103366349,LOC102224277 coding upstream 42120 7005842 ~ 7023172 (-)
hdgfl3 LOC103366351,LOC102309090,LOC101465811,LOC100694012,LOC106907470 coding upstream 64844 7028566 ~ 7042141 (-)
LOC120555919 NA coding upstream 82131 7045853 ~ 7052477 (-)
LOC120555843 LOC104937892 coding upstream 340362 7304084 ~ 7306330 (-)
G25877 NA non-coding downstream 55298 6845813 ~ 6846056 (-)
G25875 NA non-coding downstream 112727 6788342 ~ 6788627 (-)
G25874 NA non-coding downstream 162340 6699432 ~ 6739014 (-)
G25851 NA non-coding downstream 259368 6641670 ~ 6641986 (-)
G25848 NA non-coding downstream 262992 6636248 ~ 6638362 (-)
G25910 NA non-coding upstream 37441 7001163 ~ 7005653 (-)
G25920 NA non-coding upstream 90674 7054396 ~ 7054600 (-)
G25922 NA non-coding upstream 114485 7078207 ~ 7078433 (-)
G25924 NA non-coding upstream 172187 7135909 ~ 7136226 (-)
G25934 NA non-coding upstream 261562 7225284 ~ 7294154 (-)
dok4 dok4,LOC102198948,LOC100694825,LOC102775855 other downstream 208023 6642164 ~ 6693331 (-)
tpcn2 tpcn2 other downstream 310715 6534042 ~ 6590639 (-)
pop4 pop4,LOC105418436,LOC104960843 other downstream 376999 6509259 ~ 6524355 (-)
ankdd1a ankdd1a other downstream 554793 6323277 ~ 6346561 (-)
LOC120555534 LOC103369663 other downstream 733825 6156222 ~ 6167529 (-)
lmnl3 LOC104943683 other upstream 366986 7330708 ~ 7344756 (-)
G26071 mex3b other upstream 1180485 8144207 ~ 8146901 (-)
LOC120555934 NA other upstream 1530631 8494353 ~ 8496635 (-)
il16 LOC102796330 other upstream 1666886 8630608 ~ 8697622 (-)
tlnrd1 mesdc1 other upstream 1769697 8733419 ~ 8758808 (-)

Expression


Co-expression Network