LOC120556360


Basic Information

Item Value
gene id LOC120556360
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19574319 ~ 19600624 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638844.1
TTTCATTCAGGGAAGGAGAAGCGAAAAAGCCTTCAAGCAGAGCCCACTCCGGCTCAGCCATTCTCCCTGTGTGCCTGTCCCCTTGTCTCTGCTGCCGGGGCTGATTGACCAGCCCTTCCGACAGCCCGGCTGCCAGCCCGCCTGGACGCCTCCATAGCACCCATGCTTGTTACTGTGAGCACCGCTAGCTGCCTCGTGGCCTCTGACGTTTGTGTGGAAAGGAGAGGATGTGCGCAACCTTCCTGTTCTACACCAGCTCTGGGGTCTTGACCCTCCTAAAACTACTCGAGAAAAGAAATCTTTGGGATCTGTCACAACCATCCACCTCCTGTTGTATGCAGGGAACACAGCAACCTCTTCTGGACAAATGTGAAAGTGGCAGAGGGTGATGAAGCCAACCTAACAGAAACTGGAAAAGTCCTGGACCCCCAAGAATggacaaagacacaaaacagagaaaaaggacACAAAACATTGGCTTGAGaTGAGACCGCACTCTCCCAGCCTCAGCCACCGCTATCCCTGCCGAGAAATGGTAACTCATGCACACACTTctatgtgattttgattttaacCACAAAATGGAAGCATTTATTAAAACAAGCATTGATTCTTTAGGCAATGTGAGTAAAGATGTTCAGACAGGTACAACTATCAAAAACTGATATCAACATCAGACAATGATAACAATTTTAGTGCATCATGAAATAATAGCAATATTACAAAGGAATACAAACCAACCAAACAACTTAAGGTTGGATAAATTACACACTTATATGAACACTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638844.1 True 788 lncRNA 0.46 4 19574319 19600624

Neighbor

gene id symbol gene type direction distance location
gpalpp1 gpalpp1 coding downstream 62606 19508685 ~ 19511713 (-)
gtf2f2a gtf2f2 coding downstream 65787 19500529 ~ 19508532 (-)
LOC120555523 LOC103359460,LOC102291763,LOC102215599,LOC101468151 coding downstream 78906 19459171 ~ 19495413 (-)
marchf7 LOC104963329 coding downstream 215952 19343424 ~ 19358367 (-)
psmd14 psmd14,psde,LOC107563735 coding downstream 341479 19227639 ~ 19232840 (-)
LOC120556479 NA coding upstream 653089 20253713 ~ 20279186 (-)
tdrd3 tdrd3 coding upstream 875003 20475627 ~ 20497725 (-)
pcdh17 LOC104926281,LOC104949434 coding upstream 1320320 20920944 ~ 20990225 (-)
LOC120556394 LOC104958904,LOC103352838,LOC105933796,LOC103378628,LOC107088303,LOC107687747 coding upstream 1751907 21352531 ~ 21362696 (-)
txnl4b txnl4b coding upstream 1768288 21368912 ~ 21371958 (-)
G28637 NA non-coding downstream 15005 19557678 ~ 19559314 (-)
G28632 LOC102784954 non-coding downstream 22429 19550127 ~ 19551890 (-)
G28623 LOC103359454,LOC100700192 non-coding downstream 42685 19529572 ~ 19531634 (-)
G28558 baz2b non-coding downstream 138606 19420548 ~ 19435713 (-)
G28557 NA non-coding downstream 155884 19417412 ~ 19418435 (-)
G28670 NA non-coding upstream 323111 19923735 ~ 19923998 (-)
G28674 pcdh9 non-coding upstream 391308 19991932 ~ 19993954 (-)
G28677 NA non-coding upstream 461909 20062533 ~ 20063645 (-)
G28678 NA non-coding upstream 463746 20064370 ~ 20064710 (-)
G28697 NA non-coding upstream 513399 20114023 ~ 20114362 (-)
LOC120555836 pcnp other downstream 447908 19123541 ~ 19126411 (-)
LOC120555695 NA other downstream 504323 19054091 ~ 19069996 (-)
G28345 NA other downstream 854300 18719372 ~ 18720019 (-)
LOC120556268 btbd1 other downstream 915660 18650029 ~ 18658659 (-)
G28269 mapk6 other downstream 1153820 18416069 ~ 18420499 (-)
LOC120555658 NA other upstream 1979344 21579968 ~ 21583558 (-)
G28933 NA other upstream 1980418 21581042 ~ 21583498 (-)
gpc6a LOC101477426,LOC100710496,LOC102798074,LOC103365236,LOC102217784 other upstream 2285964 21886588 ~ 22051625 (-)
LOC120555944 LOC103365297,LOC100709700,LOC102795695,LOC102312860 other upstream 2670246 22270870 ~ 22336817 (-)
cbfa2t3 cbfa2t3,LOC102789151 other upstream 2948076 22548700 ~ 22601557 (-)

Expression


Co-expression Network