LOC120556370


Basic Information

Item Value
gene id LOC120556370
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 7042183 ~ 7045161 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638846.1
CAAAGTCTGTCACAAATCAAACTTCCGGTCAtcgaaataaaagaaaaacatacgCACATGCATTCAATCAAAATCCAAGGGAAGGGGACAGGGAAAGACAGGAGAAGAGAAGCAAGAGCAAGGAAAAGACCCAGTGTCAACCGTCCAGCATGCAGTGGAGACAGACACGGATAAAGACATGGACGAAACAATTGCTGCTGGCCAGTTTTCCGTTCTATACAGATCACCATGTCATGATGTCATCATGGCAGCCTGTGCTGATTGCTGTGGGCGTGGCTCAGCTGGCAGGTGGCTCCAGgTTGCAGCCTGCCTTGCTCGTTcgtttgcctgcctgcctgcctgcctacctgcctgcctgcttgctCCTCACACCTGCCCTTCTCTCTCTACGGATTGGACTCAATTGTTTGGACTCTGGAGGAGGCCTACCACATGG

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638846.1 True 436 lncRNA 0.52 3 7042183 7045161

Neighbor

gene id symbol gene type direction distance location
LOC120555501 NA coding upstream 546462 6493937 ~ 6495721 (+)
mtch2 mtch2 coding upstream 731043 6295097 ~ 6311140 (+)
trnal-uaa_1 NA coding upstream 989286 6052815 ~ 6052897 (+)
trnal-uaa NA coding upstream 990214 6051887 ~ 6051969 (+)
fadd NA coding upstream 1010029 6026435 ~ 6032154 (+)
bnc1 bnc1 coding downstream 141568 7186729 ~ 7211577 (+)
sh3gl3a LOC100692766,LOC101467334,LOC103355412,LOC102293456 coding downstream 187387 7232548 ~ 7290870 (+)
LOC120555848 LOC107591295,LOC105891088 coding downstream 272748 7317909 ~ 7330702 (+)
adamtsl3 LOC101469981 coding downstream 309716 7354877 ~ 7670801 (+)
LOC120555922 NA coding downstream 730472 7775633 ~ 7783499 (+)
G25902 NA non-coding upstream 16422 7023866 ~ 7025761 (+)
G25895 NA non-coding upstream 48979 6992995 ~ 6993204 (+)
G25893 NA non-coding upstream 50252 6987512 ~ 6991931 (+)
G25888 NA non-coding upstream 62428 6974335 ~ 6979755 (+)
G25850 NA non-coding upstream 400200 6641450 ~ 6641983 (+)
G25942 NA non-coding downstream 253338 7298499 ~ 7298701 (+)
G25950 NA non-coding downstream 285549 7330710 ~ 7337252 (+)
LOC120555850 NA non-coding downstream 584961 7630122 ~ 7632825 (+)
LOC120555849 NA non-coding downstream 587670 7632831 ~ 7634497 (+)
G25959 NA non-coding downstream 620635 7665796 ~ 7673941 (+)
LOC120556365 LOC102793592,LOC103366350,LOC101487888,LOC102307622,LOC100694289 other upstream 36505 6993956 ~ 7005678 (+)
rwdd3 rwdd3 other upstream 646477 6382570 ~ 6395706 (+)
LOC120555541 NA other upstream 752407 6262410 ~ 6289776 (+)
G25743 NA other upstream 754106 6287048 ~ 6288077 (+)
G25708 NA other upstream 1006990 6034209 ~ 6035193 (+)
G26205 NA other downstream 1708540 8753701 ~ 8760301 (+)
G26236 NA other downstream 2023568 9068729 ~ 9155343 (+)
cers3a cers3,LOC102798777 other downstream 2288068 9333229 ~ 9378611 (+)
adamts17 adamts17 other downstream 2345947 9391108 ~ 9604462 (+)
asb7 asb7,LOC102792420 other downstream 2608417 9653578 ~ 9677027 (+)

Expression


Co-expression Network