LOC120556411


Basic Information

Item Value
gene id LOC120556411
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 8254746 ~ 8256037 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638851.1
AAATATAAGAAGAGatggacagagaggaagaggagggcaaGGTGtaaggggagggaggagaggtagAAGGATAGGGTACACACGTGTTTCAAACGAAATCAGAGCCACACTTGTTGACTCTGTCATAAATGATGGTGTCTCACTGAGAGAAGCTGGGCAGAGAGTTCAGCCCAATATAAACAGATCCACAGTGGCTTCAATTATCCGCACATTTCAGAGGGATATAGTTACCGCATTTTTCAGAATTGAAGTTCGAGAACACTCAGGTGGATGAACAAGTCTTCTTTCAATTGAACAAGAGCATGCCATTGTTGACATGGTGGTCCAGAACAACACCCTCCGCCTCACAGAAATTCAGCAAAGAATAACACCGGACAATCAACTGTTCCACAATATCCACCAGTGCAGTCTCTCCACAACTGATCATGTTCTTAGGAGAAATGCAATCCAAATGAAGCAAGTATACAAAGGGCCTTTTGAGAGGAACTCCGTTAGAGTGAAGGAGTTGCGATTTCCAGTTTGTTCAAAGAATCTTGGAGTTGGATAGCAGTACAACTCGTTAGGAGTACATGTCTATTGATGAAACAGGCTTCAATCTTCACAAAAaaggagaagagggagaaaTGTGATTGGCCGTCATGCTAAAGTCAATGTACCTGGACAACGAGGAGGCAACATCACTCTCTGTGCCACAATTTCTACAACTGCTGTTGTGGCACACAATGCTGTCTTGGGACCATACAACACagccagcatttttttttttatttttttttttaaacctcctCAATGAAATCCTCTTTCCGCAGGGTGATCAGGAGCAAATAGTGCGAAATTTTGTAGTTTGGGACAATGTCCAATTCCACCATTCAGAGAGTGGTTTGAGAATCCCCCACATTTCAGGATGGTGTTCCTTCCACCATATTCTCCTTTCCTGAATCCACTCATTGTT

Function

GO:

id name namespace
GO:0044428 obsolete nuclear part cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005689 U12-type spliceosomal complex cellular_component

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03040 Spliceosome
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638851.1 True 952 lncRNA 0.43 3 8254746 8256037

Neighbor

gene id symbol gene type direction distance location
mex3b mex3b coding upstream 107819 8140884 ~ 8146927 (+)
efl1 efl1 coding upstream 185079 7939212 ~ 8069667 (+)
LOC120555922 NA coding upstream 471247 7775633 ~ 7783499 (+)
adamtsl3 LOC101469981 coding upstream 583945 7354877 ~ 7670801 (+)
LOC120555848 LOC107591295,LOC105891088 coding upstream 924044 7317909 ~ 7330702 (+)
LOC120556467 tmc3 coding downstream 289224 8545261 ~ 8601678 (+)
stard5 stard5 coding downstream 348239 8604276 ~ 8621712 (+)
mesd mesdc2 coding downstream 489125 8745162 ~ 8750880 (+)
abhd17c abhd17c,LOC102793890,LOC100694079 coding downstream 800296 9056333 ~ 9091510 (+)
LOC120556464 NA coding downstream 1005174 9261211 ~ 9296717 (+)
G26089 NA non-coding upstream 4473 8250059 ~ 8250273 (+)
G26075 NA non-coding upstream 37368 8216986 ~ 8217378 (+)
G26063 NA non-coding upstream 141355 8113186 ~ 8113391 (+)
G26028 NA non-coding upstream 408007 7846501 ~ 7846739 (+)
G26025 NA non-coding upstream 419565 7834903 ~ 7835181 (+)
G26093 NA non-coding downstream 7664 8263701 ~ 8263943 (+)
G26095 NA non-coding downstream 8895 8264932 ~ 8265165 (+)
G26096 NA non-coding downstream 22270 8278307 ~ 8279059 (+)
G26098 NA non-coding downstream 114545 8370582 ~ 8370825 (+)
LOC120555519 NA non-coding downstream 241855 8497892 ~ 8498856 (+)
LOC120556365 LOC102793592,LOC103366350,LOC101487888,LOC102307622,LOC100694289 other upstream 1249068 6993956 ~ 7005678 (+)
rwdd3 rwdd3 other upstream 1859040 6382570 ~ 6395706 (+)
LOC120555541 NA other upstream 1964970 6262410 ~ 6289776 (+)
G25743 NA other upstream 1966669 6287048 ~ 6288077 (+)
G25708 NA other upstream 2219553 6034209 ~ 6035193 (+)
G26205 NA other downstream 497664 8753701 ~ 8760301 (+)
G26236 NA other downstream 812692 9068729 ~ 9155343 (+)
cers3a cers3,LOC102798777 other downstream 1077192 9333229 ~ 9378611 (+)
adamts17 adamts17 other downstream 1135071 9391108 ~ 9604462 (+)
asb7 asb7,LOC102792420 other downstream 1397541 9653578 ~ 9677027 (+)

Expression


Co-expression Network