XLOC_005081 (si:ch1073-13h15.3)


Basic Information

Item Value
gene id XLOC_005081
gene name si:ch1073-13h15.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3220285 ~ 3237561 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009882
ATGTGGCTGCTGATTATTTGGGTCTCCGTCTTGATTTGGGCTGCAGGAACGTTCTGGTTTCTGTTCAAAAAACCGAGTCCGTTTTCTGCTTCATCGGTGAGGCCTGCAGAACCGTTAGAGCTGGACCAGAAGAAGAGAGATAAAGTGCTGAAACAAGGATTTACCAAGGAAAAGATTCCAGCGAATCTTGATGCGATTATAATAGGAAGTGGGATCGGAGGAATGACGGCTGCAGCCACAATGGCCAAATCAGGGAAGAAAGTTCTGGTTTTGGAGCAACACGACGTGGCAGGAGGCTGCTGTCACACTTTCACTGAGAAGGGCTTCGAGTTTGATGTGGGGCTCCACTACTTCGGTCAGCTGCATGAAAACGGTCTGCTTAAGGTTGCGATGGACCAGATCTCAGAGGGTCAGCTGGAGTTTGTGGAGCTGCCGCAGCATTTCGACAGTATTGTGATTGACGATAAAGGCAAACGGAGAGACTACCCCATCCTGAGCGGCCGGGTGGAGATGGAGCAGAACTTGAAGAAACTCTTCCCTAATGACGTGAAAGCCGTGGAGGAGTTCTTTAAGGTCATGAAGCTCACAGCCAGGAAAACTCCTCTGATGGCCATCCTGAAGATCATCCCACAGTGGTTTGCTCTCTTTCTGATCAAAAGTGGCATCGCTAACCTGATCTCGTCCATCTTTCGGCTCTCAGACTTCAACGCTACTGAGATGAACTACAAACTGACCAGCAACAAGGACTTGCACCTGATCTTCTCCTATTTCTTCTATGGTGTTGCTCCTAAAGAGTCCAGCTTCATGATCAATGCTCTGATGCTGCACCACTTCAAGCGTGGAGCGTATTATCCTAAAGGGGGCGCCAGTGAGATCCCCTTCCACGTTACTAAAGTCATACAGAAATATGGCGGCAGTGTGCTGGTCCGGGCCCCTGTGAGCCGAATTCTGGTCGATAACAAGGGAACTGCATATGGAGTGACGGTGAAGAAAGGTGAAGAGCATGTAGAAATCCGAGCTCCTGTCATCATCTCCAACTGTGGGATTTTCAATACTTTCCAGAAGCTTTTACCTACAGAAATACAAACCAAGCCAGAGATTCAGAGTCGTCTGGACATGATGAGGCCTGGTAAAGCATCGTTCCTCCTCTTCTCTGGCTTTGATGCCACTCAGGAAGAGCTGGGCATCACGGCCACCAGCACCTGGCTCTTCAAATCCAACGACATGGATGGCATGATGGATGATTTCTTCAGTATGAGTAAAGACGAGGCTCCAGAGAATGTTCCTATGGTTCTCATTACTTTCCCTTCAGCCAAAGACTCACAGACATCACAGATAAGACACCCAGGAAAGTCCTGTATGACCATCCTGACCATGGTGAATTATGAATGGTTCGAGGACTGGAAGGACACGCGAGTGAGGAAACGAGGAGACGATTATTTCAGCTATAAGCAGAGATTTGCAGACCATATCTTTAACTGGGCTTGCCAACATTTCCCCAAACTCAAAGACAAGCTGGTGTATCAGGAGGCAGCGACTCCTCTGACTAACATGCATTACCTCAGCTGTAACCGAGGGGCCATTTACTCAGCAGATCACAATCTGGAGCGCTTCTACGCTGAGGCCATGGCTCGAAACCGCTGCGATACGCCTGTCAAAAACCTGTATCTGTCAGGTCAGGATATATTCAGCTGTGGTATCGCCGGGGCTTTGCATGGTGGTCTCCTGTGTGCGTCTACCGTCCTGAACTACCCGGTGTACATCGACCTCTATTTGCTCAAGAAGAACCTCAAATGGAGGAAAGCCAAGGAGACGGCGAAACTGGCGGAGAAGAAGCAGCAGTGA

Function

symbol description
si:ch1073-13h15.3 Predicted to enable GDP-dissociation inhibitor activity; GTPase activator activity; and oxidoreductase activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005092 GDP-dissociation inhibitor activity molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-245 Predicted to enable GDP-dissociation inhibitor activity; GTPase activator activity; and oxidoreductase activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000099525

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009882 True 1845 mRNA 0.49 11 3220285 3237561

Neighbor

gene id symbol gene type direction distance location
XLOC_005080 col1a1b coding downstream 86802 3095699 ~ 3133483 (-)
XLOC_005079 rfng coding downstream 142890 3054442 ~ 3077395 (-)
XLOC_005078 dcxr coding downstream 166403 3043308 ~ 3053882 (-)
XLOC_005077 si:dkey-202c14.3 coding downstream 227190 2951186 ~ 2993095 (-)
XLOC_005076 fam20a coding downstream 280215 2906610 ~ 2940070 (-)
XLOC_005082 gngt2b coding upstream 11493 3249054 ~ 3252263 (-)
XLOC_005083 NA coding upstream 44195 3281756 ~ 3284909 (-)
XLOC_005084 lsm12b coding upstream 50222 3287783 ~ 3299149 (-)
XLOC_005085 TANC2 coding upstream 76943 3314504 ~ 3453589 (-)
XLOC_005086 NA coding upstream 281607 3519168 ~ 3544016 (-)
XLOC_005073 NA non-coding downstream 475644 2703355 ~ 2744641 (-)
XLOC_005072 NA non-coding downstream 550785 2625669 ~ 2669500 (-)
XLOC_005071 CU929359.1 non-coding downstream 602775 2579237 ~ 2617510 (-)
XLOC_005069 NA non-coding downstream 740354 2067963 ~ 2479931 (-)
XLOC_005068 NA non-coding downstream 1218461 2000636 ~ 2001824 (-)
XLOC_005087 NA non-coding upstream 332186 3569747 ~ 3570081 (-)
XLOC_005092 NA non-coding upstream 545060 3782621 ~ 3786382 (-)
XLOC_005094 NA non-coding upstream 622903 3860464 ~ 3865234 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_04555399_04568166 NA coding CI01000047 null 4554822 ~ 4568320 (-)