Gene
RNA
| Item | Value |
|---|---|
| gene id | gmppb |
| gene name | gmppb |
| gene type | misc |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053115.1 |
| NCBI id | CM020912.1 |
| chromosome length | 44863486 |
| location | 737925 ~ 750471 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| gmppb | Predicted to enable GTP binding activity and mannose-1-phosphate guanylyltransferase activity. Acts upstream of or within muscle cell development and protein glycosylation. Is expressed in several structures, including epidermis; hatching gland; pectoral fin musculature; periderm; and polster. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2T; congenital muscular dystrophy-dystroglycanopathy A14; and muscular dystrophy-dystroglycanopathy. Orthologous to human GMPPB (GDP-mannose pyrophosphorylase B). |
| description |
|---|
| mannose-1-phosphate guanyltransferase beta |
| id | name | namespace |
|---|---|---|
| GO:0009058 | biosynthetic process | biological_process |
| GO:0016779 | nucleotidyltransferase activity | molecular_function |
| id | description |
|---|---|
| K00966 | GMPP; mannose-1-phosphate guanylyltransferase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU46845 | False | 580 | TUCP | 0.58 | 6 | 737952 | 747823 |
| XM_039797000.1 | True | 956 | mRNA | 0.52 | 9 | 737925 | 750471 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pde12 | pde12 | coding | upstream | 5606 | 715142 ~ 732319 (+) |
| ip6k1 | ip6k1,LOC107662926 | coding | upstream | 264333 | 456073 ~ 473592 (+) |
| slmapa | slmap,LOC102793115 | coding | upstream | 637475 | 21251 ~ 100450 (+) |
| wnt4 | wnt4 | coding | downstream | 428190 | 1178661 ~ 1210396 (+) |
| LOC120557878 | sox13 | coding | downstream | 539602 | 1290073 ~ 1350322 (+) |
| si:ch211-112f3.4 | NA | coding | downstream | 651062 | 1401533 ~ 1407626 (+) |
| LOC120556832 | NA | coding | downstream | 903313 | 1653784 ~ 1655695 (+) |
| pmepa1 | pmepa1 | coding | downstream | 968983 | 1719454 ~ 1780723 (+) |
| G35085 | NA | non-coding | upstream | 20995 | 709643 ~ 716930 (+) |
| G35082 | NA | non-coding | upstream | 32849 | 704315 ~ 705076 (+) |
| G35016 | NA | non-coding | upstream | 80550 | 656168 ~ 657375 (+) |
| G35012 | NA | non-coding | upstream | 91017 | 645141 ~ 646908 (+) |
| G35008 | NA | non-coding | upstream | 94009 | 623929 ~ 643916 (+) |
| G35095 | NA | non-coding | downstream | 8082 | 758553 ~ 777423 (+) |
| G35103 | NA | non-coding | downstream | 45858 | 796329 ~ 796888 (+) |
| G35094 | NA | non-coding | downstream | 77028 | 827499 ~ 829092 (+) |
| G35147 | NA | non-coding | downstream | 86112 | 836583 ~ 836901 (+) |
| G35149 | NA | non-coding | downstream | 91050 | 841521 ~ 853049 (+) |
| G35090 | NA | other | upstream | 2781 | 732630 ~ 735144 (+) |
| G35077 | NA | other | upstream | 26788 | 684498 ~ 711137 (+) |
| G35076 | rps23,rs23,LOC106566095,LOC107578001 | other | upstream | 56714 | 673115 ~ 681211 (+) |
| G34987 | NA | other | upstream | 184650 | 550996 ~ 553275 (+) |
| ccdc66 | NA | other | upstream | 189183 | 529937 ~ 548742 (+) |
| LOC120557002 | LOC103372952 | other | downstream | 5970 | 756441 ~ 835967 (+) |
| G35175 | NA | other | downstream | 399229 | 1149700 ~ 1150241 (+) |
| G35191 | NA | other | downstream | 473612 | 1224083 ~ 1229168 (+) |
| G35295 | LOC107380983,LOC102290002,LOC108241855,LOC108250349,LOC106456447,LOC101470105,LOC102800009,LOC102214284,LOC101480046,LOC102215411,LOC102307835 | other | downstream | 1061153 | 1811624 ~ 1837655 (+) |
| asip1 | NA | other | downstream | 1273753 | 2024224 ~ 2052143 (+) |
