XLOC_005082 (gngt2b)


Basic Information

Item Value
gene id XLOC_005082
gene name gngt2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3249054 ~ 3252263 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009883
AGAGAAGGAGGAGGATTTTCAGAGTACAGAAATACAGGAGGAAGCTGGAGATCAGAGCTCAGTGTGTCTGGGGGAGCGAGAGGTCTGCACTGCTCATGATCTCCTAGCAGGACACAACACACTTCTCTGACTGCCGCAGGGCCCGACAATCCACagTCAGGATGGCTCGGGACATGTCAGATAAAGAAATCCTGAAGATGGAGCTGGACCAGCTGAAGGTGGAAGTGAACACTGCTCGTACCGCGGTTTCAGCAACAGCCCCAGAAATCATTGCATTTGTGGAGGGTTTATCTGCCGAAGATCCTCTGGTTAAAGGTGTGCCAGAGGACAAGAACCCATTCAAGGAGAAGGGAGGCTGCATTATTACGTAGCGTCGGCCCTGGAGGAACCAGGGCTCTCTGTTCAATCAACGCTTTTTGTATAAAGTTTGCCGGTCCTAGAAATGCTTTTGATTTactgtagtttaaaataaaatataaaagatgTCCAGAAATGTGAACCCTCATGTCATTTAATACCTCTTTGTGATATGATGCTGTCGGTCTGTTTTTGAAATAAACACATTAGCAATCTGAGCAAA

Function

symbol description
gngt2b Predicted to enable G-protein beta-subunit binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in plasma membrane. Predicted to be part of heterotrimeric G-protein complex. Is expressed in pineal complex; retina; and retinal cone cell. Orthologous to human GNGT2 (G protein subunit gamma transducin 2).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031680 G-protein beta/gamma-subunit complex cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0031681 G-protein beta-subunit binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091020-4 Predicted to enable G-protein beta-subunit binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in plasma membrane. Predicted to be part of heterotrimeric G-protein complex. Is expressed in pineal complex; retina; and retinal cone cell. Orthologous to human GNGT2 (G protein subunit gamma transducin 2).

Ensembl:

ensembl_id ENSDARG00000103543

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009883 True 580 mRNA 0.46 3 3249054 3252263

Neighbor

gene id symbol gene type direction distance location
XLOC_005081 si:ch1073-13h15.3 coding downstream 11493 3220285 ~ 3237561 (-)
XLOC_005080 col1a1b coding downstream 115571 3095699 ~ 3133483 (-)
XLOC_005079 rfng coding downstream 171659 3054442 ~ 3077395 (-)
XLOC_005078 dcxr coding downstream 195172 3043308 ~ 3053882 (-)
XLOC_005077 si:dkey-202c14.3 coding downstream 255959 2951186 ~ 2993095 (-)
XLOC_005083 NA coding upstream 29493 3281756 ~ 3284909 (-)
XLOC_005084 lsm12b coding upstream 35520 3287783 ~ 3299149 (-)
XLOC_005085 TANC2 coding upstream 62241 3314504 ~ 3453589 (-)
XLOC_005086 NA coding upstream 266905 3519168 ~ 3544016 (-)
XLOC_005087 NA coding upstream 317484 3569747 ~ 3570081 (-)
XLOC_005073 NA non-coding downstream 504413 2703355 ~ 2744641 (-)
XLOC_005072 NA non-coding downstream 579554 2625669 ~ 2669500 (-)
XLOC_005071 CU929359.1 non-coding downstream 631544 2579237 ~ 2617510 (-)
XLOC_005069 NA non-coding downstream 769123 2067963 ~ 2479931 (-)
XLOC_005068 NA non-coding downstream 1247230 2000636 ~ 2001824 (-)
XLOC_005092 NA non-coding upstream 530358 3782621 ~ 3786382 (-)
XLOC_005094 NA non-coding upstream 608201 3860464 ~ 3865234 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G203130 NA unknown CI01000047 null 4576786 ~ 4576965 (-)
eurasian perch (Perca fluviatilis) G80603 NA non-coding NC_053118.1 CM020915.1 41610981 ~ 41611190 (-)
striped catfish (Pangasianodon hypophthalmus) G91248 NA non-coding NC_047599.1 CM018545.1 31239228 ~ 31240310 (+)
bowfin (Amia calva) G86695 LOC103362787 non-coding CM030130.1 CM030130.1 20699214 ~ 20702457 (+)