XLOC_005083


Basic Information

Item Value
gene id XLOC_005083
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3281756 ~ 3284909 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011067
CTTAATTATACACTTTTCCATCATGTAATAGGTTTTGTTTcagatgtatatttacaaattactAAAAGAAATTAGATTCTAGGTCAAATTGTAATTAAAATTCGATGCACCGGTCAAATACTTCAGTAATTACATGTATAGAGTTACAAAAGGTTATCAATGCTGCGAACGATTGCGACGGTGTCAAAAGGCCCTGATTGCTCTTGAATAATGAAGGCTAAAGCTTGGGTTATTACTGTAACTAATACACATTGTTCCGTTCACACCGTCTCCAACTCTAAACACACCACACCAAAGCACACGTCAGAGATTTAACATGGTGTAAGGTTTTCCCTGAGCTTTCTATTGAGGTCTGAACTAAACTGACCTGAACATGCTGAACTGTAAGACTACACGTCCTGCTTCTGCATCCTTCAATTAAATATTCAGTGTGTGCCGAGTGCTTTTGTTTCCGCAGTGATGCAGGATAAATCAAGTTCAAGTCTTAGACGGTCCAGGTGCAGTCTGTGTGCGAGATGTAGATCAGAATTAAGCAAATACCTGCATTTAATTCAGGTGTAGTAACGTTTTGGAATCTGGTGTAGTTTATATACATATGTAGATGGGATTATCCTGGTTATAATGTACTACTATTTATGATCAAGCCATGTTTCTAATGGATCGGTGACTTCGTTTTCTTCTCTTGATTTATGGAGTTTGAGTTCAACCTGGCGGTTCTGGATGAGTAGGGTGGTCTTTTTGGTCTATAGCATCTTTTTTTGAATGGAGTCTCTCATCAGAGCTGGTGGACTGTCGATCTCGAGGGTTTTCCCACATCCCTCACAACATTCCTCACGGCACGTGGCTCCTGGATCTCAGCGGGAACAAGTTGTCGGAGTTGGGGAGCACCTCTTTTATTGGGATATGGGCTCTGAGGGTACTCCTGCTGTCACAGAGCAACATTCGAGTGGTGCATGATCAGGTACGAGTCacttttttgcattgtttttagcTCAACCC
>TCONS_00011068
AAGAAATTAGATTCTAGGTCAAATTGTAATTAAAATTCGATGCACCGGTCAAATACTTCAGTAATTACATGTATAGAGTTACAAAAGGTTATCAATGCTGCGAACGATTGCGACGGTGTCAAAAGGCCCTGATTGCTCTTGAATAATGAAGGCTAAAGCTTGGGTTATTACTGTAACTAATACACATTGTTCCGTTCACACCGTCTCCAACTCTAAACACACCACACCAAAGCACACGTCAGAGATTTAACATGGTGTAAGGTTTTCCCTGAGCTTTCTATTGAGGTCTGAACTAAACTGACCTGAACATGCTGAACTGTAAGACTACACGTCCTGCTTCTGCATCCTTCAATTAAATATTCAGTGTGTGCCGAGTGCTTTTGTTTCCGCAGTGATGCAGGATAAATCAAGTTCAAGTCTTAGACGGTCCAGGTGCAGTCTGTGTGCGAGATGTAGATCAGAATTAAGCAAATACCTGCATTTAATTCAGTTCAACCTG

Function

GO:

id name namespace
GO:0021952 central nervous system projection neuron axonogenesis biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011067 False 999 lncRNA 0.41 3 3281756 3284909
TCONS_00011068 True 499 lncRNA 0.40 2 3282146 3284844

Neighbor

gene id symbol gene type direction distance location
XLOC_005082 gngt2b coding downstream 29493 3249054 ~ 3252263 (-)
XLOC_005081 si:ch1073-13h15.3 coding downstream 44195 3220285 ~ 3237561 (-)
XLOC_005080 col1a1b coding downstream 148273 3095699 ~ 3133483 (-)
XLOC_005079 rfng coding downstream 204361 3054442 ~ 3077395 (-)
XLOC_005078 dcxr coding downstream 227874 3043308 ~ 3053882 (-)
XLOC_005084 lsm12b coding upstream 2874 3287783 ~ 3299149 (-)
XLOC_005085 TANC2 coding upstream 29595 3314504 ~ 3453589 (-)
XLOC_005086 NA coding upstream 234259 3519168 ~ 3544016 (-)
XLOC_005087 NA coding upstream 284838 3569747 ~ 3570081 (-)
XLOC_005088 CABZ01069040.1 coding upstream 367106 3652015 ~ 3705862 (-)
XLOC_005073 NA non-coding downstream 537115 2703355 ~ 2744641 (-)
XLOC_005072 NA non-coding downstream 612256 2625669 ~ 2669500 (-)
XLOC_005071 CU929359.1 non-coding downstream 664246 2579237 ~ 2617510 (-)
XLOC_005069 NA non-coding downstream 801825 2067963 ~ 2479931 (-)
XLOC_005068 NA non-coding downstream 1279932 2000636 ~ 2001824 (-)
XLOC_005092 NA non-coding upstream 497712 3782621 ~ 3786382 (-)
XLOC_005094 NA non-coding upstream 575555 3860464 ~ 3865234 (-)
XLOC_005102 NA non-coding upstream 804828 4089737 ~ 4129820 (-)

Expression


Co-expression Network