G36231 (mitfa,mitf-a,LOC100534525)


Basic Information

Item Value
gene id G36231
gene name mitfa,mitf-a,LOC100534525
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 6429507 ~ 6433109 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU48563
ttgGCAAGAGATAACAAACATTAAGAAAAATGCCTCATATGGTATCAACCAGTTTTGTTCAAACATCAAAAAAGAAGATTACCCTCTCCTTAGCTCTGAGTTATGCAAGATAAAGATGAAATCACTAAGTGGTCAGTGCCTACAAAGCAATTACATGTTTGGTCAAAGGCTGCTGTGAACCCCTGTTAGCAAACcacattttagtttatttatttttcaattttattttacattaattaTCAAGAACTATGATGTATCACACCAGGACtcattcaaaatactatactgcTACCTGATACTGATACCATTAGCAATATAAGGTCATTTTACCCTATTCACCCAATATTGTCACATACAACTTGTGTCTTATTTGCCTTTATCATTGTCGTAAACATTTGTACATAAATCATGTTAGAATAGGAATATCATGTTTTTGTGGGccgttaaaaataaaaaataaataaaactcccTCAGAGAAAACCAATCTTTAAACACTGGTATAAATCTCAAAATctcattaaaacaaaatgagcTCTCACTggataaaataaagaatatataataaataaatgatgataataataatgtggTCAATGTTTGCTTTGTTATTTTCTTCAGAGTACATTTAGAGCACAGGATATAAcaatatacatttaaatatcTTTAGAAACAATAAATAGTTTGCAATAATATGCAATACTTGAtcctttaatatttaaaaacctttttatatatatatatgttgagCATGTTCTTGCAATGGAACAATCAGAATTTTAAGACAGAAATCTAATATTCATGTCTACAAGAACTTAATTGATTTTTTGAGCATTACACTaaacatttttgcatttttttcaaccaaaacattttcacatatgtttgttatctcttttgCCATATACAGTTCAATACAGAGTATATATGAGACAAATATTAAAaccatagtttaaaaaaaagacaaaaataaactgttaaatCATTCAGTTGGCCAGTCTATGACAGCAGATTTGTCCCCTTGTATATATTTGTCAACTGCCAATCTATACAGCATCAAGATCGCCAAGAATGTAAAACTATTGTGTAAAATCGAGGAACTGAAATACCTCAGGCACATTAACATACATAGTTTGAACATTACAGTTCAGCAATAAATGGGCAAAAAGTACAAGGAATGGAATCAAGATAAAAAATAGAGTTCATAATAGAGTTTATTCACTTAGGCATGTGAATTCTTTAAGTCACTATAAGGTGAGTGCCTCATTGATGGGATGCTACAGATAGAAAGCGTCTGTATGCTAACAGCCATGCTCCTTCTCATCCATACTAGAGCTGGAACTGTGCCGGCTGCTACCGTGGTTGGAGCCATCTGGGGACATTGAGGACAGCAGGGGATCACTTGTGGATATTGGCGACAGGGTGTCCCTTAAAAATTCCTTCATTTTACAGGTCCTGGAGGTTCCATAGCAATCAGGATCCCCGGCGTCTGCAGGAATCTGGTCGAAGGTGATGGTGCCGTTGTTGAGGTCCAGTGTGGTTGGAGGTGACATGTCTGGAGCCGAGCTGTGCTGGTAGAGGTCAGCTGGGCAGTCGCCGAGGGCGGGTTCTTGTTTAATGGCTCGGCCAATCAAATCCGATGTGCAGACGGATGAGGATGGAACAACTGTAAGACCATGAGCACGGGCCTGGATCTCCAACTCCTGTATACGAAGCATTAGATGGCGGTTTCCATGCTCCAGCTTCCTCTGTCTGCACTCCAGCTCCTTGGCTCTCTGCTGCTCCCGCTGTAGCCTCCTGATATAGTCCACTGAGGCTTTGAGAATGGTGCCCTTATTCCAGCGCATGTCTGGATCATTTGACTTGGGTATCAAGGTTCCCAGTTCTTTGATGCGATCGTTGATGTTGAATCTCCG

Function

symbol description
mitfa Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within circadian rhythm; melanocyte differentiation; and transcription, DNA-templated. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including immature eye; iridoblast; melanoblast; neural crest; and pigment cell. Human ortholog(s) of this gene implicated in Tietz syndrome; Tietze's syndrome; Waardenburg syndrome type 2A; Waardenburg's syndrome; and familial melanoma. Orthologous to human MITF (melanocyte inducing transcription factor).

NR:

description
PREDICTED: microphthalmia-associated transcription factor isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48563 True 1914 lncRNA 0.37 3 6429507 6433109

Neighbor

gene id symbol gene type direction distance location
eevs LOC104922196,LOC103355445,LOC104966975,LOC105934428 coding upstream 2913 6414966 ~ 6426594 (+)
LOC120557997 eif4e3,LOC103355441 coding upstream 296868 6118632 ~ 6132639 (+)
shq1 shq1 coding upstream 415553 5957271 ~ 6013954 (+)
pdzrn3b pdzrn3 coding upstream 524344 5793732 ~ 5905163 (+)
cntn3b cntn3,LOC100696343,LOC102785363 coding upstream 764454 5610010 ~ 5665053 (+)
LOC120556937 LOC103355436 coding downstream 33707 6466816 ~ 6521161 (+)
trnt1 trnt1 coding downstream 96342 6529451 ~ 6537424 (+)
si:dkey-178o16.4 LOC103355435,LOC104921970,LOC104952562 coding downstream 104432 6537541 ~ 6541431 (+)
lrrn1 lrrn1 coding downstream 172261 6605370 ~ 6619215 (+)
itpr1b LOC102304252,LOC102203222,LOC100692694,LOC103355429 coding downstream 215206 6648315 ~ 6753630 (+)
G36201 gpr27,LOC103355443,LOC102784210 non-coding upstream 315194 6111677 ~ 6114313 (+)
G36175 NA non-coding upstream 373281 6055244 ~ 6056226 (+)
G36170 NA non-coding upstream 408384 6020853 ~ 6021123 (+)
G36145 NA non-coding upstream 734561 5694393 ~ 5694946 (+)
G36114 NA non-coding upstream 988898 5438157 ~ 5440609 (+)
G36288 NA non-coding downstream 110358 6543467 ~ 6544074 (+)
G36299 NA non-coding downstream 141037 6574146 ~ 6574347 (+)
LOC120556885 NA non-coding downstream 145871 6578980 ~ 6581303 (+)
G36353 NA non-coding downstream 339627 6772736 ~ 6773170 (+)
G36368 NA non-coding downstream 514970 6948079 ~ 6951049 (+)
foxp1b foxp1 other upstream 123364 6139463 ~ 6306143 (+)
prok2 prok2,LOC103355444 other upstream 322355 6104613 ~ 6107152 (+)
rybpb rybp other upstream 374291 6035072 ~ 6055216 (+)
G36156 LOC103374102 other upstream 505107 5920924 ~ 5924400 (+)
cdk5rap1 cdk5rap1 other upstream 1495343 4911699 ~ 4934164 (+)
setmar LOC100698471 other downstream 202171 6635280 ~ 6638523 (+)
si:dkey-245f22.3 NA other downstream 750090 7183199 ~ 7187214 (+)
G36458 LOC100304472,LOC107385856 other downstream 776887 7209996 ~ 7272368 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other downstream 855798 7288907 ~ 7306343 (+)
G36744 NA other downstream 1794653 8227762 ~ 8228720 (+)

Expression


Co-expression Network