setmar (LOC100698471)


Basic Information

Item Value
gene id setmar
gene name LOC100698471
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 6635280 ~ 6638523 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU48651
TGTTgtctactgtctatggttgttGTGCATCCAGCTGATCTGCCTGTATATCGTTTATAACTTCGGATATGAGTATTGACAGACGCGTGGATTTGAGCAATGGCCTCGAGGATGTTCCTGTTCTAATTGAGTGGAGTATAGCCGTAAGGAAGTTTCCTGaatttcagTATTCCCCAGATAATATTCAGGGACCAGGATGCACTATTGACCCCAGGGAAGTCACCTTTCCTGGATGCTCCTGCCTTTCCCGCTCCTGCTTCCCTGAGAACTGCTCCTGCCTGCAGACACATGGGCAGGCGTACGACACCACCGGCACGCGGCTGAACCTTAGCAGAACGAACTCTGGTTACTGCTCACCTCTGTTTGAGTGTAATGCCCTTTGCACCTGCAGTGATGCCTGCTCTAACCGGGTGGTGCAGAGAGGGCTAAGACTCAGGTTGGAGGTTTACAGCACCGAGAAGAGGGGCTGGGGAGTGAGGACGCTAGAGGCAATTCCACATGGGACGTTTGTGTGCGAGTATGCAGGAGAGGTGATCAGTTTTGAGGAGGCCAGACGCAGACAGCTTGCCCAGAGAGCTGAGGAAAATAACTACATCATCGGCGTAAGGGAGCATGCAGGTACAGGCTCCGTCACTGAGACATTTGTGGACCCTGCCATGGTGGGAAACGTAGGCCGCTTTCTCAACCACGCCTGCCAGCCCAATCTGTTCATGCAGCCAGTCCGTGTGCACTCTGTGGTtcctaggctggcgctgtttgCTGGACGGAACATCGATGCACAAGAGGAGCTGACGTTTGACTACTCAGGAGGATACAGTAACCAACCTCCTGTAGAGCTGCTGTCCACACAAAGTGACGCTGTCGCACAGGCCAGTAGGGCAGATGGACTCCAGAGGAAAGAGTGCCACTGTGGTGCCAACCACTGTGTTCAGTTCCTTCCATTGGATTTATCTAT
>XM_039796368.1
GTCACACATTTTAGGTTTGAGTTGTTgtctactgtctatggttgttGTGCATCCAGCTGATCTGCCTGTATATCGTTTATAACTTCGGATATGAGTATTGACAGACGCGTGGATTTGAGCAATGGCCTCGAGGATGTTCCTGTTCTAATTGAGTGGAGTATAGCCGTAAGGAAGTTTCCTGaatttcagTATTCCCCAGATAATATTCAGGGACCAGGATGCACTATTGACCCCAGGGAAGTCACCTTTCCTGGATGCTCCTGCCTTTCCCGCTCCTGCTTCCCTGAGAACTGCTCCTGCCTGCAGACACATGGGCAGGCGTACGACACCACCGGCACGCGGCTGAACCTTAGCAGAACGAACTCTGGTTACTGCTCACCTCTGTTTGAGTGTAATGCCCTTTGCACCTGCAGTGATGCCTGCTCTAACCGGGTGGTGCAGAGAGGGCTAAGACTCAGGTTGGAGGTTTACAGCACCGAGAAGAGGGGCTGGGGAGTGAGGACGCTAGAGGCAATTCCACATGGGACGTTTGTGTGCGAGTATGCAGGAGAGGTGATCAGTTTTGAGGAGGCCAGACGCAGACAGCTTGCCCAGAGAGCTGAGGAAAATAACTACATCATCGGCGTAAGGGAGCATGCAGGTACAGGCTCCGTCACTGAGACATTTGTGGACCCTGCCATGGTGGGAAACGTAGGCCGCTTTCTCAACCACGCCTGCCAGCCCAATCTGTTCATGCAGCCAGTCCGTGTGCACTCTGTGGTtcctaggctggcgctgtttgCTGGACGGAACATCGATGCACAAGAGGAGCTGACGTTTGACTACTCAGGAGGATACAGTAACCAACCTCCTGTAGAGCTGCTGTCCACACAAAGTGACGCTGTCGCACAGGCCAGTAGGGCAGATGGACTCCAGAGGAAAGAGTGCCACTGTGGTGCCAACCACTGTGTTCAGTTCCTTCCATTGGATTTATCTATTATCAACTGAAATTGTTTAAATTAATGTTTCTATCACATTTGTTTTCGTCTGAATGTCAAGAgatggatttgtttttttccaaatgatggagaaaagatttttgtcctttttctcctgattaaaaaaagaaaaaaa

Function

NR:

description
histone-lysine N-methyltransferase SETMAR-like

GO:

id name namespace
GO:0034968 histone lysine methylation biological_process
GO:0018022 peptidyl-lysine methylation biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG:

id description
K11433 SETMAR; [histone H3]-lysine36 N-dimethyltransferase SETMAR

RNA

RNA id representative length rna type GC content exon number start site end site
TU48651 False 955 TUCP 0.53 2 6635302 6638387
XM_039796368.1 True 1113 mRNA 0.49 2 6635280 6638523

Neighbor

gene id symbol gene type direction distance location
lrrn1 lrrn1 coding upstream 16065 6605370 ~ 6619215 (+)
si:dkey-178o16.4 LOC103355435,LOC104921970,LOC104952562 coding upstream 93849 6537541 ~ 6541431 (+)
trnt1 trnt1 coding upstream 97856 6529451 ~ 6537424 (+)
LOC120556937 LOC103355436 coding upstream 114119 6466816 ~ 6521161 (+)
eevs LOC104922196,LOC103355445,LOC104966975,LOC105934428 coding upstream 208686 6414966 ~ 6426594 (+)
itpr1b LOC102304252,LOC102203222,LOC100692694,LOC103355429 coding downstream 9792 6648315 ~ 6753630 (+)
bhlhe40 bhlhe40,LOC104959416 coding downstream 118421 6756944 ~ 6760482 (+)
LOC120556653 naaa coding downstream 128489 6767012 ~ 6770275 (+)
arl8bb arl8b,arl8a,LOC107095653,LOC105934196,LOC106565753,LOC103355426 coding downstream 137203 6775726 ~ 6786267 (+)
sema3fb LOC103371090,LOC104933620 coding downstream 243622 6882145 ~ 6941612 (+)
LOC120556885 NA non-coding upstream 53977 6578980 ~ 6581303 (+)
G36299 NA non-coding upstream 60933 6574146 ~ 6574347 (+)
G36288 NA non-coding upstream 91206 6543467 ~ 6544074 (+)
G36231 mitfa,mitf-a,LOC100534525 non-coding upstream 202171 6429507 ~ 6433109 (+)
G36201 gpr27,LOC103355443,LOC102784210 non-coding upstream 520967 6111677 ~ 6114313 (+)
G36353 NA non-coding downstream 134213 6772736 ~ 6773170 (+)
G36368 NA non-coding downstream 309556 6948079 ~ 6951049 (+)
G36369 NA non-coding downstream 314929 6953452 ~ 6953907 (+)
G36370 NA non-coding downstream 317010 6955533 ~ 6955855 (+)
G36408 NA non-coding downstream 475926 7114449 ~ 7117220 (+)
foxp1b foxp1 other upstream 329137 6139463 ~ 6306143 (+)
prok2 prok2,LOC103355444 other upstream 528128 6104613 ~ 6107152 (+)
rybpb rybp other upstream 580064 6035072 ~ 6055216 (+)
G36156 LOC103374102 other upstream 710880 5920924 ~ 5924400 (+)
cdk5rap1 cdk5rap1 other upstream 1701116 4911699 ~ 4934164 (+)
si:dkey-245f22.3 NA other downstream 544676 7183199 ~ 7187214 (+)
G36458 LOC100304472,LOC107385856 other downstream 571473 7209996 ~ 7272368 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other downstream 650384 7288907 ~ 7306343 (+)
G36744 NA other downstream 1589239 8227762 ~ 8228720 (+)
prickle2b prickle2 other downstream 3121710 9760233 ~ 9856656 (+)

Expression


Co-expression Network