G36563 (ndrg3)


Basic Information

Item Value
gene id G36563
gene name ndrg3
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7476134 ~ 7479379 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU49021
TTGTAGCTTTATTCAGTAGTAATATAAATGAGTTGAATCAGCAGACTGTGAGAAGCACCACTGGGCCCCTCATTGAAGGGACTTGTACTTTTCACATCAGAACCCACTTGATAAAAGGTTGTTAAAACATCTATTCAActtaagaaaaacattaacacaaagcagaaagaaaaagagatgagatcagtcacaaaaacaataccaaaaaaaataaaaattaatgtATGTGAAGTGACAGAGTTGACACACTGGTACATGACTTTACTGACAATGTGCTATAGTCTGCATTGGTTCTTCCATGCATCACTTTACCTTTATTTCTGCAGCTACAGTAGGTTTAGTGATCCCTCTGTATACTTTGTGACTTTTTCCGGCCTCACATCGCAGCAAATTTGGGTTACACAGAGATACAGCGACTCAAAATCAACGCATCCTACAAGTTCAGAGTTCACAACAGGAGAGACCAGTTAAAATAGTAAAAGTGTTGGTCtgtgcaatgaaaaaaaaagcctacAAGCTATTTTGAAGGAGGATTTCTCAAGTGTTTGtaaagacaattaaaaacaaagacaatgtgaaaaaaataaatacaagggGTTGGTGTTGGACAGTTGAGTCAATCATATGGTTTGACCAtttgaacacacaacacatctgAATGTAGTTATGGTTTCTGCTAGGAATGTGACTTTGATGGTGTATTTAATAttcaatatttaataatatGCATCTGGTAATATATTTCTTACATCCTCTTTTCTAATCACATAGTTTATTACAGAATCTCCTGGCATTGAGTTGCTTAGgagcgggatgagagagagacagacagagggagggagagagagagagagagagaaagagagagggagagggcacATAAGTTACTATGGGAGTGTGCAGGGGGTTGGGTGTGGTTTAGCAGGAGACTTCCATGGTCTGGGGTCCAGCCTGGTTGTCCAAGGCCCCCATGGCGCTGCCCTCCAGCAGGCTGTTGAGGTTGTTGCGGCTGCGACTGCTGTCCATGGACGTGATGCTGGAAGAGGAAGTGGTGCGTGAGCGAGCCAGGCGAGTCATTCCTGATGTCGGCACTGATTCGTTGCTGAGGTGACTGAGAAGAACGTAGGGAATGTAGCCCATTCCCTGCACAAAGTACTTGAAGGCCTCAGCAAGTTTCCCTGGCTGCGAACAGATAAAGGATCAAAGTTAGAGGATCATTTAGAGAAATTGCTTAATGATCAAACCTGAAACCTGAAAAACCAACCTGAACAACTTGGGGCAAGCCTCCACAATCCGCCATCTGGAGAAAATTATCAGTCACATTAATTCATTCTTTGTATAGTCAAAAACATTATATCATACATTTTATTCGTCAACAAATGTATTACAAAAAGTTTCACCTTTAGCAGTGTGGTCTTGGTTGGATTTAACCTGGAATTGCACTCCACCTGAAACATTAAATGAGAGGTTA
>TU49022
TTGTAGCTTTATTCAGTAGTAATATAAATGAGTTGAATCAGCAGACTGTGAGAAGCACCACTGGGCCCCTCATTGAAGGGACTTGTACTTTTCACATCAGAACCCACTTGATAAAAGGTTGTTAAAACATCTATTCAActtaagaaaaacattaacacaaagcagaaagaaaaagagatgagatcagtcacaaaaacaataccaaaaaaaataaaaattaatgtATGTGAAGTGACAGAGTTGACACACTGGTACATGACTTTACTGACAATGTGCTATAGTCTGCATTGGTTCTTCCATGCATCACTTTACCTTTATTTCTGCAGCTACAGTAGGTTTAGTGATCCCTCTGTATACTTTGTGACTTTTTCCGGCCTCACATCGCAGCAAATTTGGGTTACACAGAGATACAGCGACTCAAAATCAACGCATCCTACAAGTTCAGAGTTCACAACAGGAGAGACCAGTTAAAATAGTAAAAGTGTTGGTCtgtgcaatgaaaaaaaaagcctacAAGCTATTTTGAAGGAGGATTTCTCAAGTGTTTGtaaagacaattaaaaacaaagacaatgtgaaaaaaataaatacaagggGTTGGTGTTGGACAGTTGAGTCAATCATATGGTTTGACCAtttgaacacacaacacatctgAATGTAGTTATGGTTTCTGCTAGGAATGTGACTTTGATGGTGTATTTAATAttcaatatttaataatatGCATCTGGTAATATATTTCTTACATCCTCTTTTCTAATCACATAGTTTATTACAGAATCTCCTGGCATTGAGTTGCTTAGgagcgggatgagagagagacagacagagggagggagagagagagagagagagaaagagagagggagagggcacATAAGTTACTATGGGAGTGTGCAGGGGGTTGGGTGTGGTTTAGCAGGAGACTTCCATGGTCTGGGGTCCAGCCTGGTTGTCCAAGGCCCCCATGGCGCTGCCCTCCAGCAGGCTGTTGAGGTTGTTGCGGCTGCGACTGCTGTCCATGGACGTGATGCTGGAAGAGGAAGTGGTGCGTGAGCGAGCCAGGCGAGTCATTCCTGATGTCGGCACTGATTCGTTGCTGAGGTGACTGAGAAGAACGTAGGGAACTGTAAGCAATGATTcaagaaggaagaaagaaggagaaagggagaaatgttgaaaaaggtagCTCTTACGTTGCTTCATCCCACATCAGTGTATTTCTGATTCAAACTGAGGCTCTGTCGCAGCTTGGTGGTCAGTGAGCACAAAAAAAGCGGTTTGCTATCAACAACAGGTAAGAAATCATAGCATGTGTGCAAACTAGAATCTTTATTTCCTGTACTTTTTGGCTGTTTCTCTTTTGCATTTCACATTGTGGCAATTCGTTAATGAGGGAAAAGCAGCTTTCAGAAACATGCTGAGGTGTTGAGATTAATTTTCTACACTTTCTCTGCTTGAAAACACTCTTTTTAATCAGTTTTAATCCTGCAGTGGCATTTACTCAACAGGGGGACTCTGTggcctttaaagcaacactgggGCACTGACATACTG

Function

symbol description
ndrg3 Predicted to be involved in signal transduction. Located in cytoplasm.

NR:

description
PREDICTED: protein NDRG3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU49021 False 1471 lncRNA 0.41 3 7476134 7479379
TU49022 True 1560 lncRNA 0.41 2 7476134 7478252

Neighbor

gene id symbol gene type direction distance location
myh7ba LOC103358826,LOC104966023,LOC101480568,LOC102289245 coding upstream 27116 7434210 ~ 7449018 (+)
snai1a LOC104939346,LOC103358824,LOC108244374,LOC107385873 coding upstream 59854 7412789 ~ 7416280 (+)
si:ch211-232b12.5 LOC104939380,LOC103365892,LOC100697406,LOC102796719 coding upstream 98484 7361940 ~ 7377650 (+)
mafbb mafb,LOC104945735 coding upstream 138822 7335466 ~ 7337312 (+)
gata1a LOC100696076,LOC102798593,LOC101485806,LOC102310803 coding upstream 159052 7312734 ~ 7317082 (+)
zmynd8 LOC103358838 coding downstream 230587 7709966 ~ 7727318 (+)
LOC120557338 NA coding downstream 248770 7728149 ~ 7751120 (+)
LOC120557341 LOC106565946 coding downstream 283509 7762888 ~ 7769742 (+)
cdh4 LOC102194679,LOC102298797,LOC100702438 coding downstream 406373 7885752 ~ 8116031 (+)
LOC120557574 LOC104939084,LOC103365882 coding downstream 660855 8140234 ~ 8142947 (+)
G36529 NA non-coding upstream 21872 7378695 ~ 7454262 (+)
G36485 NA non-coding upstream 116402 7357751 ~ 7359732 (+)
LOC120557355 NA non-coding upstream 145506 7329295 ~ 7330628 (+)
G36470 NA non-coding upstream 202255 7273081 ~ 7273879 (+)
G36469 NA non-coding upstream 203334 7272454 ~ 7272800 (+)
G36568 ndrg3,LOC105922538 non-coding downstream 8517 7487896 ~ 7518266 (+)
G36604 NA non-coding downstream 41801 7521180 ~ 7525963 (+)
G36609 NA non-coding downstream 52338 7531717 ~ 7532203 (+)
G36616 LOC103386327,LOC105417874 non-coding downstream 64607 7543986 ~ 7547035 (+)
G36638 NA non-coding downstream 183565 7662944 ~ 7663874 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 169791 7288907 ~ 7306343 (+)
G36458 LOC100304472,LOC107385856 other upstream 203766 7209996 ~ 7272368 (+)
si:dkey-245f22.3 NA other upstream 288920 7183199 ~ 7187214 (+)
setmar LOC100698471 other upstream 837611 6635280 ~ 6638523 (+)
foxp1b foxp1 other upstream 1169991 6139463 ~ 6306143 (+)
G36744 NA other downstream 748383 8227762 ~ 8228720 (+)
prickle2b prickle2 other downstream 2280854 9760233 ~ 9856656 (+)
G37197 NA other downstream 2825808 10305187 ~ 10309996 (+)
glrx glrx other downstream 2908529 10387908 ~ 10396187 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 3517851 10997230 ~ 11012909 (+)

Expression


Co-expression Network