XLOC_005084 (lsm12b)


Basic Information

Item Value
gene id XLOC_005084
gene name lsm12b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3287783 ~ 3299149 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009884
AGAAGATGGCGGCTCCTGGACCGGGGGAGTATTTCAGTGTCGGGAGCCATGTCTCTTGCCTCACCTGTTTGGGGCAGCGTTTGCAGGGAGAGGTGGTGGCTTTCGATTACCCGTCCAAGATGTTGACTCTGAAATGTCCTTCCTCCAGCGGAAAGCCCAACCTCAGTGACGTCATCTTGATTAACTTAGCCTATGTTTCAGAGGTGGATATTATTAATGACCGCACGGAGACTCCTCCTCCTCTAGCATCCTTGAATATTAGCAAGCTTGCCAATCGAGCAAGGACGGAAAAGGAAGACAAGTTGTCCCAAGCCTATGCAATCAGTGCTGGGGTGTCAATTGAGGGCCAGCAGTTATTCCAGACTATACACAAAACCATCAAAGACTGTAAATGGCAGGAGAAGAACATCATTGTGATGGATGACGTCGTAATCTCACCACCGTACCAGGTAGAGAACTGCAAAGGCAAAGAGGGAAGTGCTCTAAGTCATATACGCAAAATTGTTGAGAAACATTTTAGAGATGTGGAAAGCCAGAAGACGATGCAGCGTTCACAAGCACAGCAAACACAGAAGGACTCGTCTTTATCCTCCTGAGTGGCGGGTTTGGCTCATTCGGGGAGGGCACCACGGGCATCAAGGGCCTCACAGCTGGTCCAAACCAGCACTCTTCTCCCCCTCTGCGCCGTCGTCCGAGGGTGGATGCACCAAGGGCCAAGGGTCTGGAAGatcaacaaaagaaacaaacaaaaaaacattaaaacaaaaaaaaagcaaaaatgttttaaagaaaaaaacctgAGAGTGAAAGAGTTCATTCTAAATTAGACTTTATAAAGATAATTTAAAACACCAATCATCAAACCAACCATAGTTTCTTTGACTAACATACAGTGTCTTATCCCCTCTCTGccccctcttcctcctcctcctgttTCATCTGAAATAGCGTTTCATATTTTCTTCTCTCTGACATCCCTCCTTCGCCTTCTATTCCATTTTGTCAAAAAAACGAAAAAATCCAACCAGTCAGAAACGCTTGTTAGCTTTATTTACTTTGAtgctttttcttttctcttttcttttctttcggCTGTTTATGTTTTACCAGTGTCTGTCTGTTctgtattttaaacaaaatgatgCCACACGTTACAAAggacattttctaaaataaaagtaacaaaaattCTGACTGT

Function

symbol description
lsm12b Is expressed in brain and spinal cord. Orthologous to human LSM12 (LSM12 homolog).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2164 Is expressed in brain and spinal cord. Orthologous to human LSM12 (LSM12 homolog).

Ensembl:

ensembl_id ENSDARG00000109510

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009884 True 1198 mRNA 0.44 5 3287783 3299149

Neighbor

gene id symbol gene type direction distance location
XLOC_005083 NA coding downstream 2874 3281756 ~ 3284909 (-)
XLOC_005082 gngt2b coding downstream 35520 3249054 ~ 3252263 (-)
XLOC_005081 si:ch1073-13h15.3 coding downstream 50222 3220285 ~ 3237561 (-)
XLOC_005080 col1a1b coding downstream 154300 3095699 ~ 3133483 (-)
XLOC_005079 rfng coding downstream 210388 3054442 ~ 3077395 (-)
XLOC_005085 TANC2 coding upstream 15355 3314504 ~ 3453589 (-)
XLOC_005086 NA coding upstream 220019 3519168 ~ 3544016 (-)
XLOC_005087 NA coding upstream 270598 3569747 ~ 3570081 (-)
XLOC_005088 CABZ01069040.1 coding upstream 352866 3652015 ~ 3705862 (-)
XLOC_005089 vps25 coding upstream 414927 3714076 ~ 3721957 (-)
XLOC_005073 NA non-coding downstream 543142 2703355 ~ 2744641 (-)
XLOC_005072 NA non-coding downstream 618283 2625669 ~ 2669500 (-)
XLOC_005071 CU929359.1 non-coding downstream 670273 2579237 ~ 2617510 (-)
XLOC_005069 NA non-coding downstream 807852 2067963 ~ 2479931 (-)
XLOC_005092 NA non-coding upstream 483472 3782621 ~ 3786382 (-)
XLOC_005094 NA non-coding upstream 561315 3860464 ~ 3865234 (-)
XLOC_005102 NA non-coding upstream 790588 4089737 ~ 4129820 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_04596548_04605172 LSM12A, LSM12, LSM12B coding CI01000047 null 4595980 ~ 4605172 (-)
bowfin (Amia calva) AMCG00016698 lsm12,LOC107708984,LOC107562026,LOC107693683 coding CM030122.1 CM030122.1 27810648 ~ 27817193 (+)