LOC120557560


Basic Information

Item Value
gene id LOC120557560
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10928477 ~ 10929387 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU50148
GATCCATGCAGACACTGGACACAGAGCAGCAGCACCACGGAGGCTACACTCAGGTCTCTCAGCAACATGATGTCACGTCCTGCCTGAGTTACGTAATGGTCTCAATCTATGCGGGAAGGTTGATGTTACAGTAAGAGACTACCATATTCTCAACCAACCTGGACATCCATAAGGAGGCTCCCACAGCTCCCACAGTTTACAATAATGTATTACCCATTAAGTCAGCTATGTTCTACTACTGGCACCATTTTGGCCATGGAAATGTCCCTCACCTGTCTCCCAGCGCTCCTGTCTCATGAGCCTTCTTACTACGTCTTCGTCAACTTCAGTGCTACTGCTTGCAGCGTGGACACAAACTAGCTCCTGGGAATCAGGGCGTCTTCTGTAGGTACAGCAGTTTGAAGCCGTCTGAAGAGCTGGTAGACAGGAGCACTTGAGAACTAACTGAGCCTGCATTGGAGACTTCACCCCTTAATCAGCCTGTCTGAAATATGTAAGACATTGTTTATCGcaaaaaaatgtacaattaaaAACTAACAGAAACACA
>XR_005638986.1
AGCAGCACCACGGAGGCTACACTCAGGTCTCTCAGCAACATGATGTCACGTCCTGCCTGAGTTACGTAATGGTCTCAATCTATGCGGGAAGGTTGATGTTACAGTAAGAGACTACCATATTCTCAACCAACCTGGACATCCATAAGGAGGCTCCCACAGCTCCCACAGTTTACAATAATGTATTACCCATTAAGTCAGCTATGTTCTACTACTGGCACCATTTTGGCCATGGAAATGTCCCTCACCTGTCTCCCAGCGCTCCTGTCTCATGAGCCTTCTTACTACGTCTTCGTCAACTTCAGTGCTACTGCTTGCAGCGTGGACACAAACTAGCTCCTGGGAATCAGGGCGTCTTCTGTAGGTACAGCAGTTTGAAGCCGTCTGAAGAGCTGGTAGACAGGAGCACTTGAGAACTAACTGAGCCTGCATTGGAGACTTCACCCCTTAATCAGCCTGTCTGAAATATGTAAGACATTGTTTATCGcaaaaaaatgtacaattaaaAACTAACAGAAACACATCA

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU50148 True 547 lncRNA 0.47 3 10928477 10929384
XR_005638986.1 False 523 lncRNA 0.46 3 10928504 10929387

Neighbor

gene id symbol gene type direction distance location
kiaa1328 NA coding upstream 375096 10536453 ~ 10553381 (+)
aqp7 aqp7,LOC104921067 coding upstream 396390 10528380 ~ 10532087 (+)
mlnl NA coding upstream 426045 10499573 ~ 10502432 (+)
ubap2a ubap2,LOC102784312 coding upstream 438427 10469385 ~ 10490050 (+)
dcaf12 dcaf12,LOC102784774 coding upstream 460322 10453933 ~ 10468155 (+)
dnai1.2 dnai1 coding downstream 14801 10944188 ~ 10966216 (+)
LOC120556651 NA coding downstream 99408 11028795 ~ 11050816 (+)
LOC120557557 LOC106915059,LOC102221633,LOC106958204,LOC103464975,LOC100700174,LOC102210230,LOC102299123 coding downstream 121723 11051110 ~ 11053203 (+)
cita LOC100706533 coding downstream 124803 11054190 ~ 11098050 (+)
myl2a LOC104927948,LOC103386220,LOC103366907,LOC100699907 coding downstream 170746 11100133 ~ 11103661 (+)
G37370 kiaa1161,LOC103376128 non-coding upstream 12678 10910297 ~ 10915799 (+)
G37367 NA non-coding upstream 131053 10796979 ~ 10797424 (+)
G37363 NA non-coding upstream 267153 10660866 ~ 10661324 (+)
G37342 NA non-coding upstream 369471 10554032 ~ 10559006 (+)
G37337 NA non-coding upstream 401541 10526699 ~ 10526936 (+)
G37383 fam219a non-coding downstream 7296 10936683 ~ 10943626 (+)
G37521 NA non-coding downstream 415353 11344740 ~ 11345059 (+)
G37522 NA non-coding downstream 417699 11347086 ~ 11347671 (+)
G37523 NA non-coding downstream 419749 11349136 ~ 11349368 (+)
G37524 evc2 non-coding downstream 420163 11349550 ~ 11349773 (+)
glrx glrx other upstream 532290 10387908 ~ 10396187 (+)
G37197 NA other upstream 618481 10305187 ~ 10309996 (+)
prickle2b prickle2 other upstream 1071821 9760233 ~ 9856656 (+)
G36744 NA other upstream 2699757 8227762 ~ 8228720 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 3622134 7288907 ~ 7306343 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 67843 10997230 ~ 11012909 (+)
G37525 evc2 other downstream 422691 11352078 ~ 11352387 (+)
LOC120557336 LOC103359259,LOC100704408,LOC101476502,LOC102796717,LOC102216118 other downstream 455797 11385184 ~ 11394398 (+)
G37597 NA other downstream 850791 11780178 ~ 11805394 (+)
G37714 NA other downstream 1323679 12253066 ~ 12254974 (+)

Expression


Co-expression Network