LOC120557925 (tmem233)


Basic Information

Item Value
gene id LOC120557925
gene name tmem233
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10983070 ~ 10988818 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU50220
GGTAAACAGAGTCGATCCCTCACACTTCATCTCAGGGCCATCAGTGTGCTGGATGGAGGCCAGCCGGGTTAGTGATCCCCTCCCACCTCTCCCCACAAACTTCACTATTTTCAGCTTTGACAGAGGACTACAAGCACCAGCAACAACATATCAGTCTTCTTATCAACTTCTGGTTTCaaacattttctagttaaaATTTGGACTTCAACTCaagttggattttttttgtcctttcagGTTCTGGTTATTTGCAGCTTGTTTGTAACTTTTCACTGTTTCTAATTTTtgtgtttcccccccccccctgactGTGTTTCATTTCTGCCAGGTGCAATGGCTCTTGGAGTGCTTAATTCGCAAGTTAAAAATTCCCTGAGTGGGAGTGTATTTTTCGACCGTGGTTCTATAGAGGAACAGGcacctccacctccactccGCAGCTACCTTTGTTTGACTATTTTTACCTGCTTTTGTCCTGCATACCCCGTCAACATCGTTGCCCTGGTCTTCTCTATCATGTCTAGGAACAGCTATGCTTATGGTGACTATGATGGGTCGAGGCGGCTGGGCAGGAACGCTCTCTATGTAGCTGTTGCCTCCATCATCATCGGCCTCCTCATCATCGCTATCTCCTGCATCGTTCATTTCACCACTATGGATTTTTAATGTTGTGGAacgggagagagggggagaagagAAATAAGACAGTTGAACAGGAAACTGTGGATGATGCCAATGAAAGGACTATGACTCGCCTCATGTTTACTTCAATGAGTACGTCACTTTCTCTCATGTTTACCATTCTTCATATGGACAATCAGGGATGATACAATGTGGTGAATGTGTTCATCAAAAAGGTAATTTACTACAAATGTGTAGTGAATCCATGGTCCACAGCAAGGTTTTGTTAGGCTGTGACCCTGAAGaccctgttgtttttttgctcaaAACATTGCTAGACCTAGATGATGACAGTAAATGGTCTACAACTTTATCAAAATACCCGCTTTATCCATGACAAAACCAAatgatgttaaaggtcccatggcatgaaaatttcactttatgagtttttttaacattaatatgcgttcccccagcctgcctatggtccctcagtggctagaaatggtgataggtgtaaaccgagccctgggtatcctgctctgcctttgagaaaatgaaagctcagatgagccgatctggaatcttctccttatgaggtcataatgagcaagattacctcccctttctctgctttgcccgcccataGATATTTGgctcacccatgagagagagacatcatggctttcaaacgagcgaagtggcagttggtcaaggccacaaccccaccctccaccttgccccccgccccctctctcctcctcaatagctagagacacagaaaaggctcatcctaaggaaagctcattgtgggactggctctagtggctgtaattctgcaccgaggctgaatttcgggaaagagacttcagatacagtattaggggaccactaaggtctatagaaaagcatccaaagagcaccatgtcatgggacctttaataaatgaTATTccaatataaaaataaacaataataccCACTTTCATTTCTGCCAATACTCTGATGTTCTTAAGATTGATTAAAAATGGGTGCAGAGCGCGCccatacagaggtttactcctcgatgcagcgggcccaggttcgactccgacctgcggcccttcgctgcatgtcattcccccatctctctcccctttgatGTCCTTAGCTgtactgtcaaataaaggcctaaaaatggccaaaaaataatcttattaGAAATATGTAGTACTGCCATTGATATTATTGATTATTGCTATTTTTGTGCTACAGCATTTATCTTCATTGTTATTATAATGTGTATGTCATAACTTTGGTATGTACAGTACGACATGGGAATCTTACTCACagagaaattacaatgttttaatGCTCTTTAACAATAACAGCAAACTCCTTATTAATTAGTTCTGAACACATTTCTAGATCATTTCCTGCCGTACATCAAGATTGTGTCTAAGAATAACTGTATAAACAAAccttcctttgtttccttttttcccatgttttactgtaaaaggGCAACCCAACCGATTTTATTATCAGTTGACATGTTGCAAAGAGCACTACTCCGCatgtgaaaacagttgtataatgGGTTTTTAAAGTGAGACTATGTAACCTTTAAAGAGGAAATAACCCATTTTGGGGGCAGCAAGGGTCTAATAGAGTACTTATTTGCATTatgggaatatatatatatatatctcttagTGGGTTTTGAGCTTGACCGATTCTTGGGAATCGAAGTCACAGTAACTTATCCTTTACGGCTTCAGTTTTTAAAATCCTTTTGAAATCTGTCACTAACTAAATTGTTGAGGGGCCCCTTTAACAACGTACTTAAAAACAACTTCCCCTTTCTTGGCAactgcagtgaaaatgtcacACGTTTGATTATTTTCATCTTGCTAACGACAGAATTAAGCTATTCCTGCTGTCATGTTACCTGACTAGTGCCACACTGTTTCCTGTGTGGATTGCCATGTCATGGCTCCAGACTGTGCCACATTTGGCGTCAAAGCTATCATATAAAAGTAAACACAAACCAAAAGATCATATTACATGTCTTGAGATTCTCTACACCTGTTGCCTATTAGACCCCTCATACCCAACCTTTAAACCTTTAAATTATGTATAAGATtaggatttaaaaagaaaaaaattattttcagaaacacactcgGGCCTATTTAAAATATCTCTTTTTCACCCAAGTTAACTTAGAAACCTCCTTTGGACCTTGAAGTACCACCTGCCTTGCGGGGACATTTTCTTGTAGTTtgatatgtcatagtatatctCCAACTAAATATAGAAGATTCCCCCTCCGTGTTGCAGGTTGCCCAGCATGTCACGCAGTCAAGCTGAACTGACCCTGTTGCAAGGTAACTGAAACATATGTAAAGTGTCATAAAAGGTGGGAAATAAAGTGAAGATTCAGATGGGTTCAAGCAGGAGGGTCCTGAGCCTGTGTTACCATATCAATCTCACCTCAAACCTCTTTTATTGTTTCTATTTAATAACACTTTTGGGCTGTtttcatgcatttattttcacagCTACAATGACAATTACAATGACCTTCATGGATATACAAATTAACACCtagatgcaaaataaaaaataaaaacctgtaaataaaataaataaataaactgtactGTTTGGGTTTTCACTTTTTGATTTGCAGTATGCACCTTTTTCGTCAAACCAATCTTCTGTATGCAGGTGTAATTCGAAGCAGTGCCTCTGATGTAATAGGCCTGCTGCCAAGTTTTAGCAGTTATTCTAATGCACTTAGACAAATAAGGTTTGGCAGTAATCTTGTACTATTATCTCCCATTACTTGAAAGAGAATTGCAGCGTGTTTGTAGTGCCACCTCTTTGATGTCACACCAAAGCAAAACTCGAGAGAAcaagatgaaaaatgaaaagagtGCAGGGATTAGGCGACTTGAAAGCATGCTTAGAAAGATTACAGATCAAGGTATACtttgggacaggaaactgattACCTTACGATGTAATGAAACGCCTTTGTATTGAAAatt
>XM_039798631.1
CTTCACTATTTTCAGCTTTGACAGAGGACTACAAGCACCAGCAACAACATATCAGTCTTCTTATCAACTTCTGGTTTCaaacattttctagttaaaATTTGGACTTCAACTCaaGTGCAATGGCTCTTGGAGTGCTTAATTCGCAAGTTAAAAATTCCCTGAGTGGGAGTGTATTTTTCGACCGTGGTTCTATAGAGGAACAGGcacctccacctccactccGCAGCTACCTTTGTTTGACTATTTTTACCTGCTTTTGTCCTGCATACCCCGTCAACATCGTTGCCCTGGTCTTCTCTATCATGTCTAGGAACAGCTATGCTTATGGTGACTATGATGGGTCGAGGCGGCTGGGCAGGAACGCTCTCTATGTAGCTGTTGCCTCCATCATCATCGGCCTCCTCATCATCGCTATCTCCTGCATCGTTCATTTCACCACTATGGATTTTTAATGTTGTGGAacgggagagagggggagaagagAAATAAGACAGTTGAACAGGAAACTGTGGATGATGCCAATGAAAGGACTATGACTCGCCTCATGTTTACTTCAATGAGTACGTCACTTTCTCTCATGTTTACCATTCTTCATATGGACAATCAGGGATGATACAATGTGGTGAATGTGTTCATCAAAAAGGTAATTTACTACAAATGTGTAGTGAATCCATGGTCCACAGCAAGGTTTTGTTAGGCTGTGACCCTGAAGaccctgttgtttttttgctcaaAACATTGCTAGACCTAGATGATGACAGTAAATGGTCTACAACTTTATCAAAATACCCGCTTTATCCATGACAAAACCAAatgatgttaaaggtcccatggcatgaaaatttcactttatgagtttttttaacattaatatgcgttcccccagcctgcctatggtccctcagtggctagaaatggtgataggtgtaaaccgagccct
>XM_039798632.1
CTTCACTATTTTCAGCTTTGACAGAGGACTACAAGCACCAGCAACAACATATCAGTCTTCTTATCAACTTCTGGTTTCaaacattttctagttaaaATTTGGACTTCAACTCaagttggattttttttgtcctttcagGTGCAATGGCTCTTGGAGTGCTTAATTCGCAAGTTAAAAATTCCCTGAGTGGGAGTGTATTTTTCGACCGTGGTTCTATAGAGGAACAGGcacctccacctccactccGCAGCTACCTTTGTTTGACTATTTTTACCTGCTTTTGTCCTGCATACCCCGTCAACATCGTTGCCCTGGTCTTCTCTATCATGTCTAGGAACAGCTATGCTTATGGTGACTATGATGGGTCGAGGCGGCTGGGCAGGAACGCTCTCTATGTAGCTGTTGCCTCCATCATCATCGGCCTCCTCATCATCGCTATCTCCTGCATCGTTCATTTCACCACTATGGATTTTTAATGTTGTGGAacgggagagagggggagaagagAAATAAGACAGTTGAACAGGAAACTGTGGATGATGCCAATGAAAGGACTATGACTCGCCTCATGTTTACTTCAATGAGTACGTCACTTTCTCTCATGTTTACCATTCTTCATATGGACAATCAGGGATGATACAATGTGGTGAATGTGTTCATCAAAAAGGTAATTTACTACAAATGTGTAGTGAATCCATGGTCCACAGCAAGGTTTTGTTAGGCTGTGACCCTGAAGaccctgttgtttttttgctcaaAACATTGCTAGACCTAGATGATGACAGTAAATGGTCTACAACTTTATCAAAATACCCGCTTTATCCATGACAAAACCAAatgatgttaaaggtcccatggcatgaaaatttcactttatgagtttttttaacattaatatgcgttcccccagcctgcctatggtccctcagtggctagaaatggtgataggtgtaaaccgagccct

Function

symbol description
tmem233 Predicted to be integral component of membrane. Predicted to be active in membrane.

NR:

description
PREDICTED: transmembrane protein 233

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50220 True 3658 lncRNA 0.40 3 10983070 10988818
XM_039798631.1 False 940 mRNA 0.43 4 10985574 10988719
XM_039798632.1 False 964 mRNA 0.42 4 10985574 10988719

Neighbor

gene id symbol gene type direction distance location
zgc:109965 LOC103376131,LOC101485603 coding downstream 54085 10922393 ~ 10928985 (-)
LOC120557901 NA coding downstream 61216 10919026 ~ 10921854 (-)
myorg kiaa1161,LOC103376128 coding downstream 64078 10912657 ~ 10918992 (-)
celf4 celf4 coding downstream 343935 10554026 ~ 10639135 (-)
zgc:64106 LOC104941154,LOC108239814,LOC103386237,LOC103356394 coding downstream 462367 10501666 ~ 10520703 (-)
LOC120557231 LOC102299939,LOC100700987,LOC103139561,LOC102208776,LOC104921056 coding upstream 1641 10990459 ~ 11014552 (-)
LOC120557233 LOC104921055,LOC104965500 coding upstream 33416 11022234 ~ 11026338 (-)
LOC120558048 NA coding upstream 116116 11104934 ~ 11109726 (-)
loxl2a loxl2,LOC103366914 coding upstream 176955 11165773 ~ 11196385 (-)
tacc1 NA coding upstream 211352 11200170 ~ 11232830 (-)
G37418 NA non-coding downstream 8182 10966557 ~ 10974888 (-)
G37364 NA non-coding downstream 321802 10660786 ~ 10661268 (-)
G37361 NA non-coding downstream 429689 10552293 ~ 10553381 (-)
G37321 NA non-coding downstream 493018 10488800 ~ 10490052 (-)
G37305 dcaf12,LOC102784774 non-coding downstream 526650 10453961 ~ 10456420 (-)
G37424 NA non-coding upstream 36317 11025135 ~ 11147436 (-)
G37482 NA non-coding upstream 159095 11147913 ~ 11154364 (-)
G37483 NA non-coding upstream 166753 11155571 ~ 11156612 (-)
G37485 NA non-coding upstream 168607 11157425 ~ 11157877 (-)
G37486 NA non-coding upstream 172316 11161134 ~ 11161671 (-)
fam219aa fam219a,LOC101484940,LOC100701621 other downstream 39431 10932235 ~ 10943639 (-)
tpgs2 tpgs2 other downstream 446717 10532526 ~ 10536353 (-)
rhobtb3 glrx,rhobtb3,LOC102786935 other downstream 563164 10387917 ~ 10419906 (-)
LOC120556768 LOC104965754,LOC103359409,LOC102210396,LOC101479743,LOC102082439,LOC102300053 other downstream 976897 9998996 ~ 10006173 (-)
G37045 lrig1 other downstream 1587500 9394739 ~ 9395570 (-)
G37432 LOC106915059,LOC106958204,LOC102221633,LOC103464975,LOC100700174,LOC101482873,LOC102210230 other upstream 62481 11051299 ~ 11053085 (-)
LOC120557334 cytl1 other upstream 351940 11340758 ~ 11343153 (-)
dlgap4b LOC103354995,LOC104959427,LOC102311431,LOC102791764,LOC101471735,LOC103464946 other upstream 927049 11915867 ~ 12041000 (-)
G37799 tgm2,LOC103354993,LOC105931743,LOC107088490 other upstream 1134627 12123445 ~ 12124452 (-)
G37805 LOC104936998,LOC103354991 other upstream 1227385 12216203 ~ 12217190 (-)

Expression


Co-expression Network